Wall clock time and date at job start Tue Mar 31 2020 17:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47371 * 2 1 4 4 C 1.37098 * 119.99976 * 91.53024 * 3 2 1 5 5 H 1.08003 * 120.00032 * 312.38994 * 4 3 2 6 6 C 1.38956 * 120.00218 * 132.39210 * 4 3 2 7 7 N 1.31408 * 119.99693 * 158.87081 * 6 4 3 8 8 Si 1.86799 * 119.99874 * 338.87283 * 6 4 3 9 9 H 1.48508 * 109.47060 * 87.55243 * 8 6 4 10 10 H 1.48501 * 109.46984 * 207.54831 * 8 6 4 11 11 H 1.48499 * 109.47429 * 327.55141 * 8 6 4 12 12 C 1.34780 * 120.00008 * 271.52654 * 3 2 1 13 13 O 1.21294 * 119.99887 * 176.50332 * 12 3 2 14 14 C 1.50697 * 119.99878 * 356.50038 * 12 3 2 15 15 H 1.08999 * 110.85437 * 28.49193 * 14 12 3 16 16 C 1.54628 * 110.97116 * 264.69881 * 14 12 3 17 17 C 1.51283 * 104.19368 * 266.68349 * 16 14 12 18 18 O 1.21286 * 124.94138 * 163.71918 * 17 16 14 19 19 N 1.34419 * 110.11503 * 343.74390 * 17 16 14 20 20 C 1.39929 * 124.34685 * 179.59017 * 19 17 16 21 21 C 1.38889 * 120.07162 * 89.70812 * 20 19 17 22 22 C 1.38096 * 119.92899 * 179.69739 * 21 20 19 23 23 C 1.38303 * 120.07148 * 0.57476 * 22 21 20 24 24 C 1.38262 * 120.13882 * 359.71719 * 23 22 21 25 25 C 1.50697 * 119.96555 * 179.97438 * 24 23 22 26 26 C 1.38132 * 120.07124 * 359.97438 * 24 23 22 27 27 C 1.50705 * 120.03734 * 180.02562 * 26 24 23 28 28 C 1.46862 * 111.31397 * 359.58919 * 19 17 16 29 29 H 1.09005 * 109.46988 * 294.79985 * 1 2 3 30 30 H 1.09000 * 109.46890 * 54.79170 * 1 2 3 31 31 H 1.08991 * 109.47385 * 174.79598 * 1 2 3 32 32 H 1.09003 * 109.47125 * 120.00135 * 2 1 3 33 33 H 1.09005 * 109.47412 * 239.99643 * 2 1 3 34 34 H 0.97003 * 119.99953 * 180.02562 * 7 6 4 35 35 H 1.09002 * 110.48292 * 25.35847 * 16 14 12 36 36 H 1.09001 * 110.48328 * 147.87361 * 16 14 12 37 37 H 1.08004 * 120.03837 * 359.97438 * 21 20 19 38 38 H 1.07997 * 119.96537 * 180.26492 * 22 21 20 39 39 H 1.07991 * 119.93037 * 179.74261 * 23 22 21 40 40 H 1.08996 * 109.47513 * 269.97963 * 25 24 23 41 41 H 1.09005 * 109.46785 * 29.98013 * 25 24 23 42 42 H 1.08995 * 109.47266 * 149.97747 * 25 24 23 43 43 H 1.09000 * 109.46565 * 270.01910 * 27 26 24 44 44 H 1.09001 * 109.46669 * 30.01503 * 27 26 24 45 45 H 1.08997 * 109.47046 * 150.02102 * 27 26 24 46 46 H 1.08993 * 110.26091 * 258.04052 * 28 19 17 47 47 H 1.09004 * 110.27634 * 136.00269 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2768 2.0169 1.1869 5 1 1.5534 1.9798 1.9880 6 6 3.4694 2.7089 1.3592 7 7 3.5612 3.6401 2.2818 8 14 4.9419 2.3155 0.2792 9 1 4.8772 3.1289 -0.9616 10 1 6.1931 2.6319 1.0138 11 1 4.9261 0.8730 -0.0731 12 6 2.2137 2.0269 -1.1668 13 8 2.5571 3.1902 -1.1661 14 6 2.0055 1.3035 -2.4723 15 1 1.2647 0.5115 -2.3632 16 6 3.3409 0.7417 -3.0127 17 6 3.8512 1.8239 -3.9385 18 8 4.9900 1.9085 -4.3471 19 7 2.8588 2.6784 -4.2419 20 6 3.0053 3.7961 -5.0709 21 6 2.7983 3.6795 -6.4394 22 6 2.9376 4.7858 -7.2540 23 6 3.2944 6.0064 -6.7102 24 6 3.5071 6.1244 -5.3491 25 6 3.8963 7.4560 -4.7608 26 6 3.3632 5.0230 -4.5280 27 6 3.5947 5.1526 -3.0445 28 6 1.6011 2.2884 -3.5917 29 1 -0.3633 0.4311 0.9329 30 1 -0.3633 0.5925 -0.8397 31 1 -0.3633 -1.0233 -0.0932 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 4.3936 4.1235 2.4018 35 1 4.0434 0.5759 -2.1959 36 1 3.1707 -0.1842 -3.5622 37 1 2.5243 2.7256 -6.8654 38 1 2.7726 4.6968 -8.3176 39 1 3.4067 6.8691 -7.3499 40 1 4.9825 7.5467 -4.7537 41 1 3.4688 8.2580 -5.3626 42 1 3.5192 7.5267 -3.7406 43 1 4.6430 4.9541 -2.8217 44 1 3.3401 6.1629 -2.7240 45 1 2.9684 4.4347 -2.5150 46 1 0.9429 1.7962 -4.3075 47 1 1.1094 3.1628 -3.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:09 Heat of formation + Delta-G solvation = -21.157740 kcal Electronic energy + Delta-G solvation = -30212.099977 eV Core-core repulsion = 26360.610737 eV Total energy + Delta-G solvation = -3851.489240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00392 -39.27321 -38.38255 -36.05962 -34.93726 -33.48111 -33.09904 -32.24763 -29.97646 -29.74205 -27.57923 -27.28020 -26.20681 -25.18615 -23.16327 -22.47917 -21.67813 -20.73151 -19.45327 -18.99437 -17.57920 -17.11563 -16.47782 -15.90882 -15.64194 -15.46690 -15.04634 -14.60911 -14.18320 -14.02263 -13.90129 -13.81275 -13.44763 -13.25683 -13.17113 -12.83400 -12.55133 -12.52369 -12.39620 -12.38843 -12.25675 -11.92771 -11.81437 -11.60589 -11.56229 -11.44259 -11.11696 -10.92425 -10.83848 -10.69338 -10.51837 -10.31631 -10.00465 -9.70569 -8.72886 -8.65951 -8.54578 -8.50116 -8.34094 -7.61414 -6.29542 -4.05616 1.31361 1.46471 2.76262 3.14406 3.22785 3.34624 3.55023 3.60956 3.73662 4.21725 4.41995 4.52159 4.79800 4.89154 4.94659 4.97795 5.09855 5.14109 5.17098 5.29506 5.36457 5.45520 5.47257 5.58695 5.62372 5.64821 5.68067 5.76225 5.82254 5.86735 5.93174 5.98530 6.00798 6.10386 6.15535 6.18716 6.31363 6.40797 6.44417 6.56323 6.64839 6.67975 6.84145 7.01978 7.17702 7.29845 7.79924 7.97871 8.41281 8.71566 8.92818 9.35495 9.77829 10.78348 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.005032 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.580852 B = 5562.654901 C = 6370.833572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.459 5.459 4 C -0.348 4.348 5 H 0.093 0.907 6 C 0.102 3.898 7 N -0.859 5.859 8 Si 0.875 3.125 9 H -0.250 1.250 10 H -0.296 1.296 11 H -0.275 1.275 12 C 0.460 3.540 13 O -0.530 6.530 14 C -0.127 4.127 15 H 0.114 0.886 16 C -0.145 4.145 17 C 0.530 3.470 18 O -0.528 6.528 19 N -0.569 5.569 20 C 0.145 3.855 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.116 4.116 26 C -0.059 4.059 27 C -0.144 4.144 28 C 0.126 3.874 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -2.591 -14.947 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.181 5.181 4 C -0.474 4.474 5 H 0.110 0.890 6 C -0.108 4.108 7 N -0.493 5.493 8 Si 0.702 3.298 9 H -0.175 1.175 10 H -0.223 1.223 11 H -0.201 1.201 12 C 0.248 3.752 13 O -0.410 6.410 14 C -0.149 4.149 15 H 0.132 0.868 16 C -0.186 4.186 17 C 0.319 3.681 18 O -0.403 6.403 19 N -0.299 5.299 20 C 0.056 3.944 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.060 4.060 27 C -0.200 4.200 28 C 0.004 3.996 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.140 0.860 46 H 0.094 0.906 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.621 -1.773 -15.037 15.831 hybrid contribution 0.798 -0.310 -0.409 0.949 sum -3.823 -2.083 -15.447 16.048 Atomic orbital electron populations 1.22160 0.96882 1.00623 1.02543 1.21667 0.93945 0.85811 1.01655 1.43625 1.59309 1.09996 1.05166 1.18687 1.03684 1.33319 0.91687 0.88990 1.25224 0.97991 0.93123 0.94450 1.69764 1.27109 1.18705 1.33678 0.87023 0.81275 0.79046 0.82408 1.17465 1.22326 1.20053 1.20008 0.83329 0.87352 0.84537 1.90421 1.48722 1.16191 1.85687 1.22481 0.98238 0.99122 0.95090 0.86805 1.22321 0.97907 0.98277 1.00062 1.20807 0.84382 0.82720 0.80166 1.90694 1.18427 1.75220 1.56003 1.45394 1.11587 1.24985 1.47946 1.17214 1.02276 0.85948 0.88944 1.21217 1.00702 0.98952 0.92401 1.20878 1.01553 0.92535 0.99353 1.21019 1.00220 0.97657 0.94339 1.19722 1.00417 0.95452 0.93280 1.20849 1.01653 0.93105 1.01646 1.20291 0.96426 0.91845 0.97485 1.21356 1.03788 1.04511 0.90352 1.22029 0.85345 0.99146 0.93048 0.92098 0.93024 0.92794 0.90487 0.92550 0.91775 0.87832 0.87001 0.86126 0.85925 0.86102 0.91238 0.91750 0.90746 0.91876 0.91890 0.85951 0.90557 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.02 37.16 0.37 -1.85 16 2 C 0.09 1.51 5.70 -4.04 -0.02 1.49 16 3 N -0.46 -9.96 2.04 -114.81 -0.23 -10.19 16 4 C -0.35 -9.23 9.53 -14.93 -0.14 -9.37 16 5 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 6 C 0.10 2.88 4.79 -17.47 -0.08 2.80 16 7 N -0.86 -25.50 13.96 55.50 0.77 -24.72 16 8 Si 0.88 22.84 24.97 -169.99 -4.24 18.60 16 9 H -0.25 -6.89 6.44 56.52 0.36 -6.52 16 10 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 11 H -0.28 -6.78 6.86 56.52 0.39 -6.39 16 12 C 0.46 9.70 4.81 -10.99 -0.05 9.65 16 13 O -0.53 -13.10 9.60 5.55 0.05 -13.05 16 14 C -0.13 -1.97 2.60 -90.14 -0.23 -2.20 16 15 H 0.11 1.35 5.86 -51.93 -0.30 1.04 16 16 C -0.15 -2.32 6.38 -26.74 -0.17 -2.49 16 17 C 0.53 10.19 7.98 -10.86 -0.09 10.11 16 18 O -0.53 -12.01 17.71 5.55 0.10 -11.91 16 19 N -0.57 -9.80 1.98 -112.19 -0.22 -10.03 16 20 C 0.15 2.48 5.36 -83.69 -0.45 2.04 16 21 C -0.11 -1.62 9.97 -39.39 -0.39 -2.01 16 22 C -0.12 -1.54 10.04 -39.61 -0.40 -1.94 16 23 C -0.11 -1.44 9.70 -39.55 -0.38 -1.83 16 24 C -0.09 -1.30 5.88 -104.65 -0.62 -1.91 16 25 C -0.12 -1.43 9.60 36.00 0.35 -1.08 16 26 C -0.06 -1.04 5.90 -104.43 -0.62 -1.66 16 27 C -0.14 -2.87 9.36 36.01 0.34 -2.53 16 28 C 0.13 1.84 6.12 -3.07 -0.02 1.82 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 33 H 0.06 0.76 6.42 -51.93 -0.33 0.42 16 34 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.10 1.90 6.99 -51.93 -0.36 1.53 16 36 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.07 0.96 5.94 -51.93 -0.31 0.65 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 1.13 5.95 -51.93 -0.31 0.82 16 45 H 0.12 2.71 3.28 -51.93 -0.17 2.54 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 1.46 7.42 -51.93 -0.39 1.07 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.55 369.41 -7.64 -42.19 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.82 Total: 4.50 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.61 Total: -0.96 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.32 Total: -44.94 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.15 Total: -24.96 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.24 Total: 18.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.55 -7.64 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.033 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds