Wall clock time and date at job start Tue Mar 31 2020 17:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47371 * 2 1 4 4 C 1.37098 * 119.99976 * 91.53024 * 3 2 1 5 5 H 1.08003 * 120.00032 * 312.38994 * 4 3 2 6 6 C 1.38956 * 120.00218 * 132.39210 * 4 3 2 7 7 N 1.31408 * 119.99693 * 158.87081 * 6 4 3 8 8 Si 1.86799 * 119.99874 * 338.87283 * 6 4 3 9 9 H 1.48508 * 109.47060 * 87.55243 * 8 6 4 10 10 H 1.48501 * 109.46984 * 207.54831 * 8 6 4 11 11 H 1.48499 * 109.47429 * 327.55141 * 8 6 4 12 12 C 1.34780 * 120.00008 * 271.52654 * 3 2 1 13 13 O 1.21294 * 119.99887 * 176.50332 * 12 3 2 14 14 C 1.50697 * 119.99878 * 356.50038 * 12 3 2 15 15 H 1.08999 * 110.85437 * 28.49193 * 14 12 3 16 16 C 1.54628 * 110.97116 * 264.69881 * 14 12 3 17 17 C 1.51283 * 104.19368 * 266.68349 * 16 14 12 18 18 O 1.21286 * 124.94138 * 163.71918 * 17 16 14 19 19 N 1.34419 * 110.11503 * 343.74390 * 17 16 14 20 20 C 1.39929 * 124.34685 * 179.59017 * 19 17 16 21 21 C 1.38889 * 120.07162 * 89.70812 * 20 19 17 22 22 C 1.38096 * 119.92899 * 179.69739 * 21 20 19 23 23 C 1.38303 * 120.07148 * 0.57476 * 22 21 20 24 24 C 1.38262 * 120.13882 * 359.71719 * 23 22 21 25 25 C 1.50697 * 119.96555 * 179.97438 * 24 23 22 26 26 C 1.38132 * 120.07124 * 359.97438 * 24 23 22 27 27 C 1.50705 * 120.03734 * 180.02562 * 26 24 23 28 28 C 1.46862 * 111.31397 * 359.58919 * 19 17 16 29 29 H 1.09005 * 109.46988 * 294.79985 * 1 2 3 30 30 H 1.09000 * 109.46890 * 54.79170 * 1 2 3 31 31 H 1.08991 * 109.47385 * 174.79598 * 1 2 3 32 32 H 1.09003 * 109.47125 * 120.00135 * 2 1 3 33 33 H 1.09005 * 109.47412 * 239.99643 * 2 1 3 34 34 H 0.97003 * 119.99953 * 180.02562 * 7 6 4 35 35 H 1.09002 * 110.48292 * 25.35847 * 16 14 12 36 36 H 1.09001 * 110.48328 * 147.87361 * 16 14 12 37 37 H 1.08004 * 120.03837 * 359.97438 * 21 20 19 38 38 H 1.07997 * 119.96537 * 180.26492 * 22 21 20 39 39 H 1.07991 * 119.93037 * 179.74261 * 23 22 21 40 40 H 1.08996 * 109.47513 * 269.97963 * 25 24 23 41 41 H 1.09005 * 109.46785 * 29.98013 * 25 24 23 42 42 H 1.08995 * 109.47266 * 149.97747 * 25 24 23 43 43 H 1.09000 * 109.46565 * 270.01910 * 27 26 24 44 44 H 1.09001 * 109.46669 * 30.01503 * 27 26 24 45 45 H 1.08997 * 109.47046 * 150.02102 * 27 26 24 46 46 H 1.08993 * 110.26091 * 258.04052 * 28 19 17 47 47 H 1.09004 * 110.27634 * 136.00269 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2768 2.0169 1.1869 5 1 1.5534 1.9798 1.9880 6 6 3.4694 2.7089 1.3592 7 7 3.5612 3.6401 2.2818 8 14 4.9419 2.3155 0.2792 9 1 4.8772 3.1289 -0.9616 10 1 6.1931 2.6319 1.0138 11 1 4.9261 0.8730 -0.0731 12 6 2.2137 2.0269 -1.1668 13 8 2.5571 3.1902 -1.1661 14 6 2.0055 1.3035 -2.4723 15 1 1.2647 0.5115 -2.3632 16 6 3.3409 0.7417 -3.0127 17 6 3.8512 1.8239 -3.9385 18 8 4.9900 1.9085 -4.3471 19 7 2.8588 2.6784 -4.2419 20 6 3.0053 3.7961 -5.0709 21 6 2.7983 3.6795 -6.4394 22 6 2.9376 4.7858 -7.2540 23 6 3.2944 6.0064 -6.7102 24 6 3.5071 6.1244 -5.3491 25 6 3.8963 7.4560 -4.7608 26 6 3.3632 5.0230 -4.5280 27 6 3.5947 5.1526 -3.0445 28 6 1.6011 2.2884 -3.5917 29 1 -0.3633 0.4311 0.9329 30 1 -0.3633 0.5925 -0.8397 31 1 -0.3633 -1.0233 -0.0932 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 4.3936 4.1235 2.4018 35 1 4.0434 0.5759 -2.1959 36 1 3.1707 -0.1842 -3.5622 37 1 2.5243 2.7256 -6.8654 38 1 2.7726 4.6968 -8.3176 39 1 3.4067 6.8691 -7.3499 40 1 4.9825 7.5467 -4.7537 41 1 3.4688 8.2580 -5.3626 42 1 3.5192 7.5267 -3.7406 43 1 4.6430 4.9541 -2.8217 44 1 3.3401 6.1629 -2.7240 45 1 2.9684 4.4347 -2.5150 46 1 0.9429 1.7962 -4.3075 47 1 1.1094 3.1628 -3.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:08 Heat of formation + Delta-G solvation = -42.792574 kcal Electronic energy + Delta-G solvation = -30213.038133 eV Core-core repulsion = 26360.610737 eV Total energy + Delta-G solvation = -3852.427397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33623 -40.64141 -39.81879 -37.51365 -36.59789 -34.82291 -34.35996 -34.04712 -31.30487 -31.13773 -28.88395 -28.46227 -27.43753 -26.92257 -24.57986 -23.74193 -23.04298 -21.85292 -21.01261 -20.43455 -19.17722 -18.39769 -17.98455 -17.46773 -17.06061 -16.79369 -16.45912 -16.05798 -15.69021 -15.58716 -15.31409 -15.16292 -14.90854 -14.66928 -14.44746 -14.15336 -13.96736 -13.92714 -13.81232 -13.69877 -13.55060 -13.42514 -13.20830 -12.91127 -12.79845 -12.69579 -12.62055 -12.42877 -12.20641 -12.16966 -12.04938 -11.91188 -11.76913 -11.13307 -10.81593 -10.24937 -9.93814 -9.63890 -9.55895 -9.44397 -8.47989 -6.19288 0.21220 0.35085 1.13755 1.21288 1.35121 1.39915 1.88411 1.97862 2.28894 2.62466 2.65183 3.07866 3.23604 3.51592 3.70024 3.82085 3.87771 3.89471 4.05671 4.19868 4.25535 4.33398 4.36953 4.42322 4.52925 4.53549 4.58865 4.62194 4.67280 4.71124 4.73436 4.75364 4.83029 4.85663 4.88602 5.10055 5.12791 5.19902 5.35154 5.43394 5.48794 5.54242 5.57772 5.69259 5.72850 5.91864 5.95753 6.08266 6.81612 7.01669 7.04446 7.37808 7.99423 8.63961 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.005032 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.580852 B = 5562.654901 C = 6370.833572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 N -0.476 5.476 4 C -0.331 4.331 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.907 5.907 8 Si 0.920 3.080 9 H -0.282 1.282 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.453 3.547 13 O -0.572 6.572 14 C -0.114 4.114 15 H 0.167 0.833 16 C -0.138 4.138 17 C 0.514 3.486 18 O -0.579 6.579 19 N -0.566 5.566 20 C 0.117 3.883 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.098 4.098 27 C -0.133 4.133 28 C 0.125 3.875 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.269 0.731 35 H 0.079 0.921 36 H 0.169 0.831 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -4.877 -19.232 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 N -0.200 5.200 4 C -0.459 4.459 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.544 5.544 8 Si 0.748 3.252 9 H -0.208 1.208 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.242 3.758 13 O -0.454 6.454 14 C -0.135 4.135 15 H 0.185 0.815 16 C -0.178 4.178 17 C 0.304 3.696 18 O -0.459 6.459 19 N -0.295 5.295 20 C 0.028 3.972 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.172 4.172 26 C -0.100 4.100 27 C -0.189 4.189 28 C 0.004 3.996 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.187 0.813 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.150 0.850 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.810 -4.106 -19.320 20.893 hybrid contribution 1.341 0.472 0.837 1.650 sum -5.468 -3.633 -18.484 19.615 Atomic orbital electron populations 1.22104 0.94594 1.03186 1.01561 1.21968 0.95739 0.82475 1.03491 1.43871 1.59935 1.12360 1.03784 1.18585 1.02046 1.32487 0.92784 0.91631 1.25707 0.99925 0.93601 0.95196 1.69852 1.27448 1.20921 1.36209 0.86319 0.79407 0.79760 0.79754 1.20805 1.23293 1.17179 1.21095 0.81059 0.87242 0.86360 1.90444 1.49696 1.18584 1.86714 1.22517 0.99554 0.99980 0.91481 0.81530 1.22417 0.96838 0.99527 0.99068 1.21474 0.84046 0.83797 0.80304 1.90651 1.20396 1.76760 1.58123 1.45554 1.12063 1.24439 1.47423 1.17594 1.03561 0.85598 0.90422 1.21481 1.00377 1.00694 0.91065 1.21392 0.98962 0.91517 1.01100 1.21444 0.98619 0.99273 0.93461 1.20027 1.00050 0.95278 0.94390 1.20879 1.01839 0.93224 1.01254 1.20264 0.99790 0.93871 0.96037 1.21108 1.00710 1.04037 0.93089 1.22299 0.84891 0.98631 0.93796 0.94784 0.92105 0.88660 0.91097 0.88365 0.92179 0.90269 0.81322 0.84022 0.81897 0.82516 0.91137 0.88685 0.92359 0.95827 0.91500 0.88062 0.84965 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.02 71.98 0.72 -2.94 16 2 C 0.09 2.50 5.70 86.38 0.49 2.99 16 3 N -0.48 -20.33 2.04 -635.53 -1.30 -21.63 16 4 C -0.33 -18.11 9.53 84.04 0.80 -17.31 16 5 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 6 C 0.06 3.56 4.79 84.93 0.41 3.97 16 7 N -0.91 -57.05 13.96 21.66 0.30 -56.75 16 8 Si 0.92 49.56 24.97 68.60 1.71 51.28 16 9 H -0.28 -16.57 6.44 99.48 0.64 -15.93 16 10 H -0.30 -16.60 7.11 99.48 0.71 -15.89 16 11 H -0.25 -12.01 6.86 99.48 0.68 -11.33 16 12 C 0.45 18.82 4.81 87.66 0.42 19.24 16 13 O -0.57 -29.38 9.60 -3.07 -0.03 -29.41 16 14 C -0.11 -3.12 2.60 -10.48 -0.03 -3.15 16 15 H 0.17 2.82 5.86 -2.39 -0.01 2.80 16 16 C -0.14 -3.98 6.38 30.59 0.20 -3.79 16 17 C 0.51 19.33 7.98 87.90 0.70 20.03 16 18 O -0.58 -26.84 17.71 -3.05 -0.05 -26.89 16 19 N -0.57 -18.86 1.98 -627.45 -1.24 -20.11 16 20 C 0.12 3.93 5.36 38.15 0.20 4.13 16 21 C -0.12 -2.99 9.97 22.39 0.22 -2.77 16 22 C -0.11 -2.29 10.04 22.25 0.22 -2.07 16 23 C -0.11 -2.41 9.70 22.29 0.22 -2.20 16 24 C -0.10 -2.78 5.88 -19.88 -0.12 -2.90 16 25 C -0.12 -2.81 9.60 71.24 0.68 -2.13 16 26 C -0.10 -3.55 5.90 -19.74 -0.12 -3.67 16 27 C -0.13 -5.76 9.36 71.24 0.67 -5.09 16 28 C 0.12 3.28 6.12 86.82 0.53 3.81 16 29 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.32 7.65 -2.39 -0.02 1.30 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 33 H 0.10 2.08 6.42 -2.38 -0.02 2.06 16 34 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 35 H 0.08 2.73 6.99 -2.39 -0.02 2.72 16 36 H 0.17 2.90 8.14 -2.39 -0.02 2.89 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.16 2.28 8.06 -2.92 -0.02 2.26 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.68 8.08 -2.38 -0.02 1.66 16 42 H 0.06 1.58 5.94 -2.39 -0.01 1.57 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 2.66 5.95 -2.39 -0.01 2.65 16 45 H 0.10 4.83 3.28 -2.39 -0.01 4.82 16 46 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 2.19 7.42 -2.38 -0.02 2.17 16 Total: -1.00 -86.42 369.41 6.51 -79.91 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.89 Total: 17.44 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.23 Total: 6.16 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.24 Total: -98.49 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -0.08 Total: -56.30 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.71 Total: 51.28 kcal Total: -86.42 6.51 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.120 kcal (2) G-P(sol) polarization free energy of solvation -86.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds