Wall clock time and date at job start Tue Mar 31 2020 16:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46784 * 2 1 4 4 N 1.46498 * 109.47430 * 120.00054 * 2 1 3 5 5 C 1.34780 * 120.00043 * 275.00149 * 4 2 1 6 6 O 1.21290 * 119.99897 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00137 * 179.97438 * 5 4 2 8 8 C 1.55232 * 110.57976 * 294.87879 * 7 5 4 9 9 C 1.54892 * 102.58494 * 203.33962 * 8 7 5 10 10 C 1.54267 * 104.31472 * 37.92892 * 9 8 7 11 11 C 1.53876 * 106.59807 * 336.32626 * 10 9 8 12 12 C 1.50702 * 109.47252 * 240.00373 * 2 1 3 13 13 O 1.21279 * 119.99931 * 239.99560 * 12 2 1 14 14 N 1.34770 * 120.00120 * 60.00087 * 12 2 1 15 15 C 1.39238 * 120.00247 * 176.71344 * 14 12 2 16 16 C 1.39485 * 119.83357 * 217.47916 * 15 14 12 17 17 C 1.36378 * 120.16989 * 179.71188 * 16 15 14 18 18 C 1.40867 * 119.82115 * 0.57442 * 17 16 15 19 19 C 1.41160 * 120.15982 * 179.67811 * 18 17 16 20 20 H 1.07991 * 120.00362 * 157.93044 * 19 18 17 21 21 C 1.39912 * 119.99623 * 337.92651 * 19 18 17 22 22 N 1.30868 * 120.00068 * 327.64094 * 21 19 18 23 23 Si 1.86803 * 119.99581 * 147.63807 * 21 19 18 24 24 H 1.48497 * 109.46999 * 94.98774 * 23 21 19 25 25 H 1.48498 * 109.46702 * 214.98826 * 23 21 19 26 26 H 1.48505 * 109.47247 * 334.98386 * 23 21 19 27 27 C 1.40869 * 119.68068 * 359.69734 * 18 17 16 28 28 C 1.36370 * 119.82193 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47595 * 299.99426 * 1 2 3 31 31 H 1.08998 * 109.47307 * 60.00327 * 1 2 3 32 32 H 0.96999 * 119.99973 * 95.00820 * 4 2 1 33 33 H 1.09000 * 110.43294 * 57.46024 * 7 5 4 34 34 H 1.08999 * 110.90367 * 85.04415 * 8 7 5 35 35 H 1.09001 * 110.76624 * 321.56345 * 8 7 5 36 36 H 1.08999 * 110.48362 * 279.18006 * 9 8 7 37 37 H 1.09003 * 110.48655 * 156.68036 * 9 8 7 38 38 H 1.09002 * 110.02536 * 95.61019 * 10 9 8 39 39 H 1.08994 * 110.03139 * 216.99125 * 10 9 8 40 40 H 1.09001 * 110.02796 * 119.28238 * 11 10 9 41 41 H 1.08993 * 110.02775 * 240.66651 * 11 10 9 42 42 H 0.97006 * 120.00147 * 356.70093 * 14 12 2 43 43 H 1.07997 * 119.91295 * 359.97438 * 16 15 14 44 44 H 1.08000 * 120.08540 * 180.24917 * 17 16 15 45 45 H 0.97006 * 119.99304 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.08694 * 179.97438 * 27 18 17 47 47 H 1.08006 * 119.91521 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6489 -0.7288 3.5877 8 6 1.6423 -1.8226 4.0349 9 6 1.9739 -1.9921 5.5384 10 6 2.2811 -0.5608 6.0249 11 6 2.7102 0.2425 4.7846 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6963 -1.1193 14 7 1.7068 -0.2498 -2.4545 15 6 2.2263 -0.8647 -3.5906 16 6 2.5885 -0.0918 -4.6938 17 6 3.1036 -0.6863 -5.8079 18 6 3.2580 -2.0859 -5.8471 19 6 3.7840 -2.7094 -6.9992 20 1 4.2320 -3.6893 -6.9260 21 6 3.7248 -2.0578 -8.2359 22 7 2.7222 -1.2623 -8.5091 23 14 5.0770 -2.3233 -9.4970 24 1 4.6698 -3.3947 -10.4412 25 1 5.3079 -1.0631 -10.2479 26 1 6.3284 -2.7231 -8.8044 27 6 2.8846 -2.8604 -4.7312 28 6 2.3763 -2.2511 -3.6222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 3.6295 -1.1665 3.4011 34 1 1.8138 -2.7534 3.4941 35 1 0.6159 -1.4809 3.9019 36 1 2.8455 -2.6340 5.6667 37 1 1.1176 -2.4018 6.0741 38 1 1.3888 -0.1172 6.4668 39 1 3.0892 -0.5803 6.7561 40 1 2.0262 1.0759 4.6246 41 1 3.7269 0.6136 4.9136 42 1 1.1103 0.5099 -2.5441 43 1 2.4648 0.9807 -4.6640 44 1 3.3873 -0.0861 -6.6597 45 1 2.6811 -0.8109 -9.3667 46 1 2.9998 -3.9340 -4.7544 47 1 2.0899 -2.8434 -2.7657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078905298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:49 Heat of formation + Delta-G solvation = -72.944435 kcal Electronic energy + Delta-G solvation = -27299.804112 eV Core-core repulsion = 23446.069232 eV Total energy + Delta-G solvation = -3853.734880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57865 -39.57294 -37.62917 -37.14232 -35.02413 -34.53200 -33.17296 -31.30595 -29.62501 -29.24884 -28.95814 -28.70674 -25.47495 -24.21934 -22.35734 -21.50565 -20.85482 -20.58310 -20.00862 -19.53210 -18.00811 -17.40922 -17.10812 -16.19245 -16.06232 -15.64098 -15.24561 -15.12714 -14.83756 -14.65909 -14.02008 -13.73065 -13.67761 -13.48683 -13.29019 -12.72658 -12.71403 -12.44038 -12.15598 -12.10240 -12.05921 -11.71550 -11.58573 -11.46670 -11.43047 -11.40777 -11.19010 -11.07998 -10.99158 -10.70348 -10.58587 -10.21914 -9.89894 -9.80551 -9.57072 -9.28899 -9.06029 -8.76312 -7.60506 -7.21336 -6.94078 -4.32626 2.46576 2.50189 2.89554 2.90103 3.02123 3.04686 3.08523 3.28909 3.70426 3.85341 4.18543 4.26494 4.44802 4.45496 4.78812 4.90991 4.99720 5.06581 5.10253 5.14856 5.20114 5.26770 5.35233 5.46511 5.53269 5.62515 5.63127 5.65302 5.78149 5.86216 5.97836 5.99920 6.07588 6.14269 6.28095 6.35841 6.69454 6.88325 6.94918 7.07814 7.22301 7.40822 7.50503 7.61211 7.80947 7.96546 8.08611 8.19261 8.21243 8.48866 8.63850 8.78723 8.93163 9.96872 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.002008 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.816144 B =13937.944288 C =14281.832830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.111 0.889 4 N -0.708 5.708 5 C 0.524 3.476 6 O -0.544 6.544 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.495 3.505 13 O -0.532 6.532 14 N -0.640 5.640 15 C -0.027 4.027 16 C -0.100 4.100 17 C -0.171 4.171 18 C 0.113 3.887 19 C -0.464 4.464 20 H 0.082 0.918 21 C 0.088 3.912 22 N -0.767 5.767 23 Si 0.896 3.104 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.225 4.225 28 C -0.063 4.063 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.396 0.604 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.284 0.716 46 H 0.095 0.905 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 2.198 19.783 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.129 0.871 4 N -0.362 5.362 5 C 0.310 3.690 6 O -0.421 6.421 7 C -0.135 4.135 8 C -0.152 4.152 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.281 3.719 13 O -0.409 6.409 14 N -0.282 5.282 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.191 4.191 18 C 0.111 3.889 19 C -0.491 4.491 20 H 0.101 0.899 21 C -0.134 4.134 22 N -0.390 5.390 23 Si 0.720 3.280 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.245 4.245 28 C -0.083 4.083 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.471 2.498 19.718 20.177 hybrid contribution 0.393 -0.054 -0.898 0.982 sum -3.077 2.444 18.820 19.226 Atomic orbital electron populations 1.22124 0.93083 1.03130 1.03354 1.20759 0.95476 0.98049 0.84100 0.87140 1.45776 1.67062 1.14923 1.08396 1.20558 0.77026 0.87085 0.84297 1.90673 1.50433 1.16054 1.84973 1.22230 1.00929 0.97381 0.92994 1.22555 0.98703 0.97564 0.96378 1.22354 1.01536 0.97030 0.95211 1.22150 1.01253 0.95263 0.97570 1.22072 1.02655 0.98202 0.92077 1.20439 0.81178 0.85659 0.84668 1.90676 1.38157 1.25951 1.86163 1.42843 1.47151 1.33768 1.04475 1.17032 1.15341 0.91732 0.87748 1.20177 1.00927 0.96811 0.94052 1.20624 1.06550 0.94800 0.97126 1.17607 0.87712 0.91592 0.92031 1.19526 1.34060 1.03902 0.91638 0.89949 1.25958 0.94865 0.93136 0.99483 1.69942 1.24951 1.21167 1.22952 0.86497 0.82687 0.78901 0.79941 1.19419 1.19847 1.18061 1.20589 1.10228 0.97872 0.95817 1.20269 0.98806 0.92273 0.96948 0.91715 0.91068 0.90911 0.75257 0.87983 0.90605 0.90914 0.91302 0.91389 0.91717 0.91725 0.89751 0.91479 0.77016 0.89199 0.87444 0.90524 0.88717 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.38 37.15 0.35 -1.33 16 2 C 0.12 1.60 2.99 -69.09 -0.21 1.39 16 3 H 0.11 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.71 -8.55 4.94 -54.93 -0.27 -8.82 16 5 C 0.52 6.33 7.10 -10.98 -0.08 6.25 16 6 O -0.54 -8.17 15.09 5.55 0.08 -8.09 16 7 C -0.11 -1.03 3.25 -89.93 -0.29 -1.33 16 8 C -0.11 -0.85 6.34 -24.55 -0.16 -1.01 16 9 C -0.12 -0.79 6.82 -25.07 -0.17 -0.96 16 10 C -0.12 -0.86 6.80 -25.61 -0.17 -1.03 16 11 C -0.11 -0.99 6.18 -25.61 -0.16 -1.15 16 12 C 0.50 8.15 7.03 -10.99 -0.08 8.08 16 13 O -0.53 -10.55 13.45 5.56 0.07 -10.48 16 14 N -0.64 -10.85 5.21 -9.74 -0.05 -10.90 16 15 C -0.03 -0.58 6.25 -83.57 -0.52 -1.10 16 16 C -0.10 -2.24 9.90 -39.79 -0.39 -2.63 16 17 C -0.17 -4.31 8.74 -39.26 -0.34 -4.65 16 18 C 0.11 2.98 5.57 -106.80 -0.60 2.39 16 19 C -0.46 -12.07 8.94 -37.85 -0.34 -12.41 16 20 H 0.08 2.08 8.01 -52.49 -0.42 1.66 16 21 C 0.09 2.13 4.77 -17.34 -0.08 2.05 16 22 N -0.77 -19.07 11.78 55.55 0.65 -18.42 16 23 Si 0.90 17.95 29.66 -169.99 -5.04 12.91 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.23 -5.62 9.74 -39.26 -0.38 -6.01 16 28 C -0.06 -1.48 8.59 -39.79 -0.34 -1.82 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.67 7.49 -51.93 -0.39 0.28 16 32 H 0.41 4.76 7.79 -40.82 -0.32 4.44 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.90 6.85 -51.93 -0.36 0.54 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 5.35 8.15 -40.82 -0.33 5.01 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.74 6.53 -52.49 -0.34 2.40 16 45 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 46 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 47 H 0.10 2.31 6.45 -52.48 -0.34 1.98 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -30.23 384.46 -9.82 -40.05 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.09 Total: 13.22 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.96 Total: -15.26 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.33 Total: -38.14 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.04 Total: 12.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.23 -9.82 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078905298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.898 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds