Wall clock time and date at job start Tue Mar 31 2020 16:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46784 * 2 1 4 4 N 1.46498 * 109.47430 * 120.00054 * 2 1 3 5 5 C 1.34780 * 120.00043 * 275.00149 * 4 2 1 6 6 O 1.21290 * 119.99897 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00137 * 179.97438 * 5 4 2 8 8 C 1.55232 * 110.57976 * 294.87879 * 7 5 4 9 9 C 1.54892 * 102.58494 * 203.33962 * 8 7 5 10 10 C 1.54267 * 104.31472 * 37.92892 * 9 8 7 11 11 C 1.53876 * 106.59807 * 336.32626 * 10 9 8 12 12 C 1.50702 * 109.47252 * 240.00373 * 2 1 3 13 13 O 1.21279 * 119.99931 * 239.99560 * 12 2 1 14 14 N 1.34770 * 120.00120 * 60.00087 * 12 2 1 15 15 C 1.39238 * 120.00247 * 176.71344 * 14 12 2 16 16 C 1.39485 * 119.83357 * 217.47916 * 15 14 12 17 17 C 1.36378 * 120.16989 * 179.71188 * 16 15 14 18 18 C 1.40867 * 119.82115 * 0.57442 * 17 16 15 19 19 C 1.41160 * 120.15982 * 179.67811 * 18 17 16 20 20 H 1.07991 * 120.00362 * 157.93044 * 19 18 17 21 21 C 1.39912 * 119.99623 * 337.92651 * 19 18 17 22 22 N 1.30868 * 120.00068 * 327.64094 * 21 19 18 23 23 Si 1.86803 * 119.99581 * 147.63807 * 21 19 18 24 24 H 1.48497 * 109.46999 * 94.98774 * 23 21 19 25 25 H 1.48498 * 109.46702 * 214.98826 * 23 21 19 26 26 H 1.48505 * 109.47247 * 334.98386 * 23 21 19 27 27 C 1.40869 * 119.68068 * 359.69734 * 18 17 16 28 28 C 1.36370 * 119.82193 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47595 * 299.99426 * 1 2 3 31 31 H 1.08998 * 109.47307 * 60.00327 * 1 2 3 32 32 H 0.96999 * 119.99973 * 95.00820 * 4 2 1 33 33 H 1.09000 * 110.43294 * 57.46024 * 7 5 4 34 34 H 1.08999 * 110.90367 * 85.04415 * 8 7 5 35 35 H 1.09001 * 110.76624 * 321.56345 * 8 7 5 36 36 H 1.08999 * 110.48362 * 279.18006 * 9 8 7 37 37 H 1.09003 * 110.48655 * 156.68036 * 9 8 7 38 38 H 1.09002 * 110.02536 * 95.61019 * 10 9 8 39 39 H 1.08994 * 110.03139 * 216.99125 * 10 9 8 40 40 H 1.09001 * 110.02796 * 119.28238 * 11 10 9 41 41 H 1.08993 * 110.02775 * 240.66651 * 11 10 9 42 42 H 0.97006 * 120.00147 * 356.70093 * 14 12 2 43 43 H 1.07997 * 119.91295 * 359.97438 * 16 15 14 44 44 H 1.08000 * 120.08540 * 180.24917 * 17 16 15 45 45 H 0.97006 * 119.99304 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.08694 * 179.97438 * 27 18 17 47 47 H 1.08006 * 119.91521 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6489 -0.7288 3.5877 8 6 1.6423 -1.8226 4.0349 9 6 1.9739 -1.9921 5.5384 10 6 2.2811 -0.5608 6.0249 11 6 2.7102 0.2425 4.7846 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6963 -1.1193 14 7 1.7068 -0.2498 -2.4545 15 6 2.2263 -0.8647 -3.5906 16 6 2.5885 -0.0918 -4.6938 17 6 3.1036 -0.6863 -5.8079 18 6 3.2580 -2.0859 -5.8471 19 6 3.7840 -2.7094 -6.9992 20 1 4.2320 -3.6893 -6.9260 21 6 3.7248 -2.0578 -8.2359 22 7 2.7222 -1.2623 -8.5091 23 14 5.0770 -2.3233 -9.4970 24 1 4.6698 -3.3947 -10.4412 25 1 5.3079 -1.0631 -10.2479 26 1 6.3284 -2.7231 -8.8044 27 6 2.8846 -2.8604 -4.7312 28 6 2.3763 -2.2511 -3.6222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 3.6295 -1.1665 3.4011 34 1 1.8138 -2.7534 3.4941 35 1 0.6159 -1.4809 3.9019 36 1 2.8455 -2.6340 5.6667 37 1 1.1176 -2.4018 6.0741 38 1 1.3888 -0.1172 6.4668 39 1 3.0892 -0.5803 6.7561 40 1 2.0262 1.0759 4.6246 41 1 3.7269 0.6136 4.9136 42 1 1.1103 0.5099 -2.5441 43 1 2.4648 0.9807 -4.6640 44 1 3.3873 -0.0861 -6.6597 45 1 2.6811 -0.8109 -9.3667 46 1 2.9998 -3.9340 -4.7544 47 1 2.0899 -2.8434 -2.7657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078905298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:48 Heat of formation + Delta-G solvation = -90.389651 kcal Electronic energy + Delta-G solvation = -27300.560593 eV Core-core repulsion = 23446.069232 eV Total energy + Delta-G solvation = -3854.491361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73646 -40.80951 -39.16926 -38.07736 -36.35504 -35.98535 -34.87287 -32.37509 -31.45758 -30.75243 -29.74219 -29.50198 -27.07272 -25.47564 -23.64899 -22.99387 -22.34239 -21.35248 -21.12838 -20.66977 -19.32791 -19.02916 -18.38891 -17.45151 -17.18092 -16.97806 -16.50792 -16.33072 -15.84087 -15.77428 -15.69090 -15.08569 -14.82310 -14.43393 -14.32347 -14.24819 -13.99025 -13.84758 -13.79598 -13.38162 -13.31196 -12.87318 -12.85311 -12.69761 -12.67651 -12.33102 -12.19226 -12.06218 -11.97753 -11.91940 -11.68929 -11.60288 -11.28617 -11.16440 -10.88435 -10.79510 -10.51052 -10.23825 -9.49052 -9.03700 -8.74685 -6.24864 0.78421 1.13004 1.35496 1.40690 1.51519 1.54299 1.71568 1.86308 2.18743 2.45422 2.62942 3.48270 3.57384 3.63986 3.70737 3.81373 3.99151 4.07620 4.24003 4.37887 4.47579 4.47757 4.53190 4.58674 4.61820 4.63687 4.75702 4.80666 4.88984 4.96317 5.08631 5.10910 5.11491 5.15068 5.20561 5.24429 5.27487 5.30018 5.41249 5.41488 5.49237 5.62974 5.84895 5.99973 6.06761 6.33670 6.44631 6.58547 6.65375 6.87934 6.96510 7.14257 7.28951 8.18793 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.002008 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.816144 B =13937.944288 C =14281.832830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.113 0.887 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.113 4.113 12 C 0.500 3.500 13 O -0.565 6.565 14 N -0.634 5.634 15 C -0.011 4.011 16 C -0.099 4.099 17 C -0.190 4.190 18 C 0.084 3.916 19 C -0.503 4.503 20 H 0.076 0.924 21 C 0.052 3.948 22 N -0.797 5.797 23 Si 0.971 3.029 24 H -0.259 1.259 25 H -0.261 1.261 26 H -0.262 1.262 27 C -0.245 4.245 28 C -0.072 4.072 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.416 0.584 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.295 0.705 46 H 0.093 0.907 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 2.673 20.884 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 H 0.131 0.869 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.455 6.455 7 C -0.134 4.134 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.160 4.160 11 C -0.151 4.151 12 C 0.287 3.713 13 O -0.444 6.444 14 N -0.279 5.279 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.210 4.210 18 C 0.081 3.919 19 C -0.531 4.531 20 H 0.094 0.906 21 C -0.168 4.168 22 N -0.420 5.420 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.186 1.186 26 H -0.186 1.186 27 C -0.265 4.265 28 C -0.092 4.092 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.251 0.749 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.656 2.984 20.841 21.369 hybrid contribution 0.374 -0.160 -1.099 1.171 sum -3.282 2.824 19.743 20.212 Atomic orbital electron populations 1.22102 0.90974 1.03568 1.04386 1.20698 0.96903 0.97351 0.82452 0.86924 1.45833 1.66967 1.15044 1.08220 1.21078 0.76208 0.86739 0.84838 1.90660 1.51894 1.17481 1.85467 1.22308 1.01810 0.97720 0.91551 1.22568 0.97786 0.97226 0.97357 1.22360 1.02376 0.96773 0.94251 1.22143 1.01693 0.95287 0.96835 1.22069 1.02266 0.97811 0.92972 1.21046 0.80060 0.84953 0.85260 1.90669 1.39453 1.27542 1.86694 1.42742 1.47508 1.34213 1.03412 1.17082 1.13231 0.91241 0.88836 1.20451 0.99712 0.98502 0.93275 1.20644 1.08018 0.94420 0.97950 1.17925 0.88706 0.92523 0.92756 1.19720 1.35962 1.04520 0.92881 0.90627 1.26725 0.96607 0.92583 1.00891 1.69938 1.26156 1.21805 1.24112 0.85383 0.78960 0.79376 0.77217 1.18376 1.18559 1.18561 1.20731 1.11238 0.98040 0.96473 1.20403 0.98879 0.93359 0.96538 0.91567 0.90755 0.89185 0.74884 0.86827 0.89628 0.91568 0.90361 0.90395 0.91631 0.90587 0.91905 0.91289 0.74644 0.86012 0.88466 0.89459 0.88861 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.38 71.98 0.68 -2.18 16 2 C 0.13 3.21 2.99 44.24 0.13 3.34 16 3 H 0.11 2.72 7.58 -2.38 -0.02 2.71 16 4 N -0.71 -16.11 4.94 -446.09 -2.20 -18.32 16 5 C 0.52 12.08 7.10 87.66 0.62 12.71 16 6 O -0.58 -16.90 15.09 -3.06 -0.05 -16.95 16 7 C -0.11 -1.89 3.25 -10.35 -0.03 -1.92 16 8 C -0.11 -1.45 6.34 32.01 0.20 -1.25 16 9 C -0.12 -1.25 6.82 31.67 0.22 -1.03 16 10 C -0.12 -1.46 6.80 31.32 0.21 -1.25 16 11 C -0.11 -1.88 6.18 31.32 0.19 -1.68 16 12 C 0.50 15.65 7.03 87.66 0.62 16.27 16 13 O -0.56 -21.87 13.45 -3.03 -0.04 -21.91 16 14 N -0.63 -20.25 5.21 -303.12 -1.58 -21.83 16 15 C -0.01 -0.46 6.25 38.57 0.24 -0.22 16 16 C -0.10 -4.39 9.90 22.14 0.22 -4.17 16 17 C -0.19 -9.74 8.74 22.48 0.20 -9.54 16 18 C 0.08 4.54 5.57 -21.27 -0.12 4.42 16 19 C -0.50 -27.14 8.94 23.39 0.21 -26.93 16 20 H 0.08 4.00 8.01 -2.92 -0.02 3.98 16 21 C 0.05 2.55 4.77 85.24 0.41 2.96 16 22 N -0.80 -40.08 11.78 21.82 0.26 -39.82 16 23 Si 0.97 37.03 29.66 68.60 2.03 39.06 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 27 C -0.24 -12.62 9.74 22.48 0.22 -12.40 16 28 C -0.07 -3.39 8.59 22.13 0.19 -3.20 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.38 7.49 -2.39 -0.02 1.36 16 32 H 0.41 9.05 7.79 -92.71 -0.72 8.33 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.32 6.85 -2.39 -0.02 1.31 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.42 10.05 8.15 -92.70 -0.76 9.30 16 43 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.10 5.08 6.53 -2.91 -0.02 5.06 16 45 H 0.29 13.14 8.30 -92.70 -0.77 12.37 16 46 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 47 H 0.11 4.84 6.45 -2.91 -0.02 4.82 16 Total: -1.00 -66.60 384.46 2.34 -64.25 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -0.48 Total: 41.59 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.40 Total: -26.08 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.53 Total: -79.96 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.09 Total: -38.86 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -66.60 2.34 -64.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078905298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.136 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds