Wall clock time and date at job start Tue Mar 31 2020 15:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50695 * 120.00155 * 2 1 4 4 C 1.33000 * 120.00267 * 180.02562 * 2 1 3 5 5 C 1.47101 * 120.00029 * 5.21660 * 4 2 1 6 6 O 1.21615 * 119.99712 * 352.78185 * 5 4 2 7 7 N 1.34773 * 120.00449 * 172.78474 * 5 4 2 8 8 C 1.46493 * 120.00235 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.38357 * 119.85569 * 89.99865 * 9 8 7 11 11 C 1.37953 * 120.14446 * 179.97438 * 10 9 8 12 12 C 1.39574 * 119.85540 * 0.02562 * 11 10 9 13 13 C 1.47845 * 120.14764 * 179.97438 * 12 11 10 14 14 O 1.21561 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00374 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47228 * 34.99818 * 16 15 13 18 18 C 1.52999 * 109.46723 * 274.99617 * 16 15 13 19 19 C 1.50702 * 109.47003 * 155.00248 * 16 15 13 20 20 H 1.07994 * 119.99814 * 24.36984 * 19 16 15 21 21 C 1.37879 * 119.99772 * 204.64731 * 19 16 15 22 22 N 1.31513 * 119.99651 * 184.62697 * 21 19 16 23 23 Si 1.86796 * 119.99859 * 4.62673 * 21 19 16 24 24 H 1.48502 * 109.47315 * 95.58771 * 23 21 19 25 25 H 1.48500 * 109.47270 * 215.58433 * 23 21 19 26 26 H 1.48501 * 109.47394 * 335.58665 * 23 21 19 27 27 C 1.39578 * 119.71178 * 0.25818 * 12 11 10 28 28 C 1.37966 * 119.84728 * 359.46610 * 27 12 11 29 29 H 1.09002 * 109.47095 * 144.70552 * 1 2 3 30 30 H 1.08996 * 109.47137 * 264.69738 * 1 2 3 31 31 H 1.08992 * 109.47362 * 24.70633 * 1 2 3 32 32 H 1.09002 * 109.47566 * 270.00276 * 3 2 1 33 33 H 1.08997 * 109.47168 * 29.99881 * 3 2 1 34 34 H 1.08996 * 109.47708 * 150.00299 * 3 2 1 35 35 H 1.08004 * 119.99983 * 185.21566 * 4 2 1 36 36 H 0.97003 * 119.99521 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47265 * 60.00470 * 8 7 5 38 38 H 1.08996 * 109.47419 * 300.00216 * 8 7 5 39 39 H 1.08000 * 119.92447 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.06992 * 180.02562 * 11 10 9 41 41 H 0.97006 * 119.99682 * 359.97438 * 15 13 12 42 42 H 1.08999 * 109.47266 * 304.97293 * 18 16 15 43 43 H 1.09000 * 109.47330 * 64.97602 * 18 16 15 44 44 H 1.08998 * 109.47225 * 184.97359 * 18 16 15 45 45 H 0.97008 * 119.99583 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.07493 * 179.72328 * 27 12 11 47 47 H 1.08005 * 119.92304 * 180.27462 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4411 -2.4231 -0.1169 6 8 0.2256 -2.4311 -0.0805 7 7 2.1185 -3.5789 -0.2638 8 6 1.3907 -4.8450 -0.3792 9 6 2.3733 -5.9773 -0.5324 10 6 2.8590 -6.6244 0.5900 11 6 3.7583 -7.6619 0.4566 12 6 4.1785 -8.0582 -0.8140 13 6 5.1425 -9.1690 -0.9643 14 8 5.5706 -9.7397 0.0199 15 7 5.5468 -9.5489 -2.1926 16 6 6.5016 -10.6500 -2.3416 17 1 6.3169 -11.3979 -1.5705 18 6 7.9268 -10.1118 -2.1994 19 6 6.3354 -11.2785 -3.7012 20 1 5.9139 -10.7049 -4.5133 21 6 6.7162 -12.5877 -3.9066 22 7 6.6565 -13.1082 -5.1128 23 14 7.3169 -13.6218 -2.4716 24 1 6.1879 -14.4202 -1.9300 25 1 8.3915 -14.5356 -2.9356 26 1 7.8487 -12.7318 -1.4084 27 6 3.6893 -7.3973 -1.9418 28 6 2.7860 -6.3649 -1.7948 29 1 -0.3633 -0.8388 -0.5938 30 1 -0.3633 -0.0950 1.0232 31 1 -0.3633 0.9335 -0.4295 32 1 2.4421 1.6198 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5137 35 1 3.2487 -1.1537 0.0845 36 1 3.0881 -3.5725 -0.2925 37 1 0.7371 -4.8102 -1.2508 38 1 0.7919 -5.0029 0.5178 39 1 2.5333 -6.3165 1.5726 40 1 4.1363 -8.1665 1.3336 41 1 5.2049 -9.0937 -2.9781 42 1 8.0824 -9.3025 -2.9127 43 1 8.0742 -9.7368 -1.1866 44 1 8.6390 -10.9127 -2.3974 45 1 6.9248 -14.0292 -5.2574 46 1 4.0140 -7.6961 -2.9276 47 1 2.4032 -5.8556 -2.6669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079813327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:14 Heat of formation + Delta-G solvation = -37.908073 kcal Electronic energy + Delta-G solvation = -26451.739595 eV Core-core repulsion = 22599.524006 eV Total energy + Delta-G solvation = -3852.215589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.36876 -39.80926 -38.33675 -36.08145 -35.05687 -34.88638 -32.58754 -31.82175 -31.11451 -29.74562 -28.61430 -28.07825 -26.27203 -25.29062 -22.88472 -22.76165 -21.44657 -20.85098 -19.69431 -19.26666 -18.13467 -17.35554 -16.57968 -16.12690 -16.06004 -15.50595 -15.18052 -15.00562 -14.64196 -14.55243 -14.37911 -14.17701 -14.02673 -13.76894 -13.63246 -13.05576 -13.00532 -12.84384 -12.68125 -12.56702 -12.50576 -12.32003 -12.08395 -11.91143 -11.66508 -11.54119 -11.19113 -11.15417 -10.86408 -10.54469 -9.87483 -9.82978 -9.65281 -9.34267 -9.25012 -9.19710 -9.10041 -8.94687 -8.73097 -8.17660 -6.25402 -4.28627 0.73051 1.01703 1.26239 2.82756 2.97952 3.22931 3.30678 3.32815 3.40260 3.84890 4.00662 4.30565 4.32256 4.41592 4.45654 4.62396 4.81561 4.83684 5.00720 5.01780 5.05628 5.09657 5.24130 5.26091 5.28574 5.37432 5.42032 5.49512 5.52338 5.70774 5.72572 5.87422 6.05575 6.14472 6.17663 6.28621 6.31418 6.33121 6.36373 6.49459 6.63641 6.74260 6.89748 7.14568 7.23526 7.31266 7.47460 7.96983 8.07982 8.48123 8.72059 8.85651 9.36011 10.86349 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.001825 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.359856 B =15339.056072 C =15455.824857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 C -0.129 4.129 4 C -0.240 4.240 5 C 0.546 3.454 6 O -0.542 6.542 7 N -0.723 5.723 8 C 0.162 3.838 9 C -0.099 4.099 10 C -0.110 4.110 11 C -0.067 4.067 12 C -0.111 4.111 13 C 0.540 3.460 14 O -0.553 6.553 15 N -0.694 5.694 16 C 0.232 3.768 17 H 0.051 0.949 18 C -0.149 4.149 19 C -0.534 4.534 20 H 0.079 0.921 21 C 0.081 3.919 22 N -0.889 5.889 23 Si 0.870 3.130 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.255 1.255 27 C -0.088 4.088 28 C -0.107 4.107 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.393 0.607 42 H 0.046 0.954 43 H 0.029 0.971 44 H 0.055 0.945 45 H 0.267 0.733 46 H 0.133 0.867 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 25.623 9.421 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 C -0.186 4.186 4 C -0.261 4.261 5 C 0.337 3.663 6 O -0.422 6.422 7 N -0.374 5.374 8 C 0.039 3.961 9 C -0.100 4.100 10 C -0.128 4.128 11 C -0.086 4.086 12 C -0.115 4.115 13 C 0.326 3.674 14 O -0.433 6.433 15 N -0.342 5.342 16 C 0.130 3.870 17 H 0.069 0.931 18 C -0.208 4.208 19 C -0.571 4.571 20 H 0.097 0.903 21 C -0.123 4.123 22 N -0.525 5.525 23 Si 0.696 3.304 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.178 1.178 27 C -0.107 4.107 28 C -0.126 4.126 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.228 0.772 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.150 0.850 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.801 24.977 9.989 28.630 hybrid contribution 0.795 -0.545 0.142 0.974 sum -9.005 24.432 10.131 27.940 Atomic orbital electron populations 1.21512 0.90954 1.03900 1.03861 1.22596 0.97009 0.94421 0.88939 1.21031 1.00092 0.94438 1.03007 1.22319 1.00164 0.91881 1.11758 1.18602 0.87303 0.84258 0.76174 1.90669 1.13838 1.86530 1.51183 1.45995 1.10603 1.05968 1.74813 1.20191 0.92581 0.80257 1.03033 1.19960 0.98675 0.97595 0.93735 1.21025 0.97394 0.96112 0.98291 1.21302 0.94926 0.95158 0.97171 1.20357 0.99144 0.97672 0.94287 1.18316 0.81478 0.83219 0.84394 1.90723 1.58169 1.56205 1.38236 1.46412 1.45144 1.36161 1.06510 1.19182 0.84698 0.84957 0.98207 0.93124 1.22286 0.99179 1.00738 0.98625 1.20982 1.44036 0.97916 0.94211 0.90344 1.24869 0.94410 0.97343 0.95715 1.69886 1.46968 1.14981 1.20699 0.86959 0.79269 0.80757 0.83409 1.20084 1.20967 1.17849 1.21438 0.95894 0.94885 0.98486 1.21002 0.97506 0.97283 0.96782 0.87031 0.90521 0.92823 0.90166 0.90997 0.91075 0.85627 0.76237 0.90419 0.90457 0.85452 0.84503 0.77196 0.93527 0.95165 0.92626 0.92265 0.84963 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.91 36.00 0.32 -0.82 16 2 C -0.03 -0.19 6.11 -101.17 -0.62 -0.81 16 3 C -0.13 -0.56 10.01 36.00 0.36 -0.20 16 4 C -0.24 -1.77 9.63 -37.80 -0.36 -2.13 16 5 C 0.55 5.21 7.70 -12.67 -0.10 5.11 16 6 O -0.54 -6.70 12.97 5.26 0.07 -6.64 16 7 N -0.72 -5.77 5.54 -62.68 -0.35 -6.11 16 8 C 0.16 1.39 5.79 -5.19 -0.03 1.36 16 9 C -0.10 -0.93 5.25 -104.53 -0.55 -1.48 16 10 C -0.11 -1.11 9.68 -39.64 -0.38 -1.50 16 11 C -0.07 -0.87 9.60 -39.19 -0.38 -1.24 16 12 C -0.11 -1.65 5.87 -104.97 -0.62 -2.26 16 13 C 0.54 10.41 7.74 -12.33 -0.10 10.31 16 14 O -0.55 -12.55 16.01 5.31 0.09 -12.46 16 15 N -0.69 -13.79 5.02 -55.88 -0.28 -14.07 16 16 C 0.23 5.47 2.09 -69.08 -0.14 5.33 16 17 H 0.05 1.31 5.19 -51.93 -0.27 1.04 16 18 C -0.15 -3.26 9.03 37.16 0.34 -2.92 16 19 C -0.53 -14.15 9.07 -34.44 -0.31 -14.46 16 20 H 0.08 2.18 8.01 -52.49 -0.42 1.76 16 21 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 23 Si 0.87 21.17 26.31 -169.99 -4.47 16.70 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.25 -6.07 5.92 56.52 0.33 -5.73 16 27 C -0.09 -1.07 9.54 -39.18 -0.37 -1.44 16 28 C -0.11 -1.06 9.68 -39.64 -0.38 -1.45 16 29 H 0.11 1.13 5.25 -52.23 -0.27 0.86 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.07 0.25 8.06 -51.93 -0.42 -0.16 16 35 H 0.13 0.66 8.04 -52.48 -0.42 0.23 16 36 H 0.40 2.56 8.45 -40.82 -0.34 2.21 16 37 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.83 7.65 -52.48 -0.40 1.43 16 41 H 0.39 6.79 6.59 -40.82 -0.27 6.53 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 1.22 6.81 -51.93 -0.35 0.87 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.13 1.47 6.41 -52.49 -0.34 1.13 16 47 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -32.96 390.95 -8.64 -41.60 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.93 Total: 6.71 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.43 Total: -6.46 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.15 Total: -45.34 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.47 Total: 16.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.96 -8.64 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.688 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds