Wall clock time and date at job start Tue Mar 31 2020 15:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50695 * 120.00155 * 2 1 4 4 C 1.33000 * 120.00267 * 180.02562 * 2 1 3 5 5 C 1.47101 * 120.00029 * 5.21660 * 4 2 1 6 6 O 1.21615 * 119.99712 * 352.78185 * 5 4 2 7 7 N 1.34773 * 120.00449 * 172.78474 * 5 4 2 8 8 C 1.46493 * 120.00235 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.38357 * 119.85569 * 89.99865 * 9 8 7 11 11 C 1.37953 * 120.14446 * 179.97438 * 10 9 8 12 12 C 1.39574 * 119.85540 * 0.02562 * 11 10 9 13 13 C 1.47845 * 120.14764 * 179.97438 * 12 11 10 14 14 O 1.21561 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00374 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47228 * 34.99818 * 16 15 13 18 18 C 1.52999 * 109.46723 * 274.99617 * 16 15 13 19 19 C 1.50702 * 109.47003 * 155.00248 * 16 15 13 20 20 H 1.07994 * 119.99814 * 24.36984 * 19 16 15 21 21 C 1.37879 * 119.99772 * 204.64731 * 19 16 15 22 22 N 1.31513 * 119.99651 * 184.62697 * 21 19 16 23 23 Si 1.86796 * 119.99859 * 4.62673 * 21 19 16 24 24 H 1.48502 * 109.47315 * 95.58771 * 23 21 19 25 25 H 1.48500 * 109.47270 * 215.58433 * 23 21 19 26 26 H 1.48501 * 109.47394 * 335.58665 * 23 21 19 27 27 C 1.39578 * 119.71178 * 0.25818 * 12 11 10 28 28 C 1.37966 * 119.84728 * 359.46610 * 27 12 11 29 29 H 1.09002 * 109.47095 * 144.70552 * 1 2 3 30 30 H 1.08996 * 109.47137 * 264.69738 * 1 2 3 31 31 H 1.08992 * 109.47362 * 24.70633 * 1 2 3 32 32 H 1.09002 * 109.47566 * 270.00276 * 3 2 1 33 33 H 1.08997 * 109.47168 * 29.99881 * 3 2 1 34 34 H 1.08996 * 109.47708 * 150.00299 * 3 2 1 35 35 H 1.08004 * 119.99983 * 185.21566 * 4 2 1 36 36 H 0.97003 * 119.99521 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47265 * 60.00470 * 8 7 5 38 38 H 1.08996 * 109.47419 * 300.00216 * 8 7 5 39 39 H 1.08000 * 119.92447 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.06992 * 180.02562 * 11 10 9 41 41 H 0.97006 * 119.99682 * 359.97438 * 15 13 12 42 42 H 1.08999 * 109.47266 * 304.97293 * 18 16 15 43 43 H 1.09000 * 109.47330 * 64.97602 * 18 16 15 44 44 H 1.08998 * 109.47225 * 184.97359 * 18 16 15 45 45 H 0.97008 * 119.99583 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.07493 * 179.72328 * 27 12 11 47 47 H 1.08005 * 119.92304 * 180.27462 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4411 -2.4231 -0.1169 6 8 0.2256 -2.4311 -0.0805 7 7 2.1185 -3.5789 -0.2638 8 6 1.3907 -4.8450 -0.3792 9 6 2.3733 -5.9773 -0.5324 10 6 2.8590 -6.6244 0.5900 11 6 3.7583 -7.6619 0.4566 12 6 4.1785 -8.0582 -0.8140 13 6 5.1425 -9.1690 -0.9643 14 8 5.5706 -9.7397 0.0199 15 7 5.5468 -9.5489 -2.1926 16 6 6.5016 -10.6500 -2.3416 17 1 6.3169 -11.3979 -1.5705 18 6 7.9268 -10.1118 -2.1994 19 6 6.3354 -11.2785 -3.7012 20 1 5.9139 -10.7049 -4.5133 21 6 6.7162 -12.5877 -3.9066 22 7 6.6565 -13.1082 -5.1128 23 14 7.3169 -13.6218 -2.4716 24 1 6.1879 -14.4202 -1.9300 25 1 8.3915 -14.5356 -2.9356 26 1 7.8487 -12.7318 -1.4084 27 6 3.6893 -7.3973 -1.9418 28 6 2.7860 -6.3649 -1.7948 29 1 -0.3633 -0.8388 -0.5938 30 1 -0.3633 -0.0950 1.0232 31 1 -0.3633 0.9335 -0.4295 32 1 2.4421 1.6198 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5137 35 1 3.2487 -1.1537 0.0845 36 1 3.0881 -3.5725 -0.2925 37 1 0.7371 -4.8102 -1.2508 38 1 0.7919 -5.0029 0.5178 39 1 2.5333 -6.3165 1.5726 40 1 4.1363 -8.1665 1.3336 41 1 5.2049 -9.0937 -2.9781 42 1 8.0824 -9.3025 -2.9127 43 1 8.0742 -9.7368 -1.1866 44 1 8.6390 -10.9127 -2.3974 45 1 6.9248 -14.0292 -5.2574 46 1 4.0140 -7.6961 -2.9276 47 1 2.4032 -5.8556 -2.6669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079813327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:13 Heat of formation + Delta-G solvation = -59.600423 kcal Electronic energy + Delta-G solvation = -26452.680246 eV Core-core repulsion = 22599.524006 eV Total energy + Delta-G solvation = -3853.156240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32956 -40.81381 -39.54908 -36.84488 -36.63598 -35.67804 -34.46643 -32.98781 -32.08660 -31.24759 -29.27532 -28.58488 -27.32663 -27.07403 -24.09619 -23.68229 -22.37169 -22.04865 -21.24146 -19.89583 -19.66490 -18.30694 -17.96554 -17.43935 -16.96694 -16.57243 -16.31091 -16.00184 -15.91467 -15.68341 -15.45030 -15.14000 -14.79329 -14.66440 -14.58715 -14.52134 -14.38846 -14.13519 -13.59662 -13.58647 -13.39245 -13.25665 -13.10356 -13.08242 -12.82876 -12.66471 -12.54380 -12.38843 -12.36657 -12.05061 -11.82723 -11.26010 -10.93602 -10.82879 -10.55949 -10.29517 -10.05498 -9.99548 -9.78850 -9.73163 -8.39235 -6.44996 -0.27563 0.37232 0.45275 1.28465 1.34569 1.45937 1.78720 2.27212 2.30499 2.37127 2.42931 2.91623 3.00491 3.52786 3.77650 3.84894 3.90290 3.98414 3.99053 4.26075 4.33539 4.37025 4.45153 4.60706 4.63632 4.67077 4.71251 4.71806 4.79650 4.81166 4.83770 4.94462 5.02328 5.05955 5.06721 5.19359 5.25416 5.31597 5.40152 5.44465 5.47015 5.47556 5.63257 5.64326 5.72337 5.84883 6.11299 6.57420 6.61332 6.81396 7.18451 7.30774 7.35653 8.75579 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.001825 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.359856 B =15339.056072 C =15455.824857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 C -0.127 4.127 4 C -0.250 4.250 5 C 0.539 3.461 6 O -0.576 6.576 7 N -0.714 5.714 8 C 0.166 3.834 9 C -0.079 4.079 10 C -0.101 4.101 11 C -0.074 4.074 12 C -0.136 4.136 13 C 0.540 3.460 14 O -0.594 6.594 15 N -0.695 5.695 16 C 0.235 3.765 17 H 0.029 0.971 18 C -0.143 4.143 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.033 3.967 22 N -0.929 5.929 23 Si 0.922 3.078 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.249 1.249 27 C -0.087 4.087 28 C -0.100 4.100 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.405 0.595 42 H 0.060 0.940 43 H 0.035 0.965 44 H 0.050 0.950 45 H 0.270 0.730 46 H 0.139 0.861 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 28.127 10.223 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 C -0.183 4.183 4 C -0.270 4.270 5 C 0.331 3.669 6 O -0.459 6.459 7 N -0.365 5.365 8 C 0.043 3.957 9 C -0.080 4.080 10 C -0.119 4.119 11 C -0.093 4.093 12 C -0.140 4.140 13 C 0.328 3.672 14 O -0.477 6.477 15 N -0.344 5.344 16 C 0.131 3.869 17 H 0.047 0.953 18 C -0.202 4.202 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.168 4.168 22 N -0.568 5.568 23 Si 0.747 3.253 24 H -0.203 1.203 25 H -0.200 1.200 26 H -0.173 1.173 27 C -0.106 4.106 28 C -0.118 4.118 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.242 0.758 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.157 0.843 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.998 27.505 10.781 31.189 hybrid contribution 0.728 -1.176 -0.116 1.388 sum -9.270 26.329 10.665 29.882 Atomic orbital electron populations 1.21442 0.92022 1.03659 1.03139 1.22855 0.96581 0.95668 0.87935 1.21073 1.00320 0.93028 1.03868 1.22452 1.01218 0.90864 1.12506 1.19025 0.87036 0.85191 0.75625 1.90673 1.15352 1.87073 1.52838 1.45899 1.11068 1.05388 1.74194 1.20127 0.92253 0.80090 1.03217 1.20066 0.97550 0.97001 0.93359 1.21201 0.96108 0.94814 0.99761 1.21306 0.95778 0.96078 0.96152 1.20043 1.00125 0.97715 0.96090 1.18936 0.81368 0.83639 0.83223 1.90687 1.59794 1.57909 1.39303 1.46185 1.44986 1.35557 1.07659 1.18928 0.86587 0.85793 0.95617 0.95290 1.22175 0.97655 1.00954 0.99387 1.21168 1.42763 0.97789 0.94972 0.92380 1.25545 0.94959 0.98633 0.97629 1.69981 1.48810 1.15571 1.22430 0.86121 0.78918 0.79440 0.80858 1.20290 1.20003 1.17261 1.21518 0.96072 0.95090 0.97876 1.21247 0.96315 0.96282 0.97940 0.89393 0.91138 0.91318 0.89187 0.90215 0.89957 0.83286 0.75074 0.90290 0.90410 0.83098 0.85526 0.75794 0.92112 0.94584 0.93114 0.92042 0.84314 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.91 71.23 0.63 -1.52 16 2 C -0.03 -0.34 6.11 -17.62 -0.11 -0.45 16 3 C -0.13 -0.74 10.01 71.23 0.71 -0.02 16 4 C -0.25 -3.13 9.63 23.43 0.23 -2.90 16 5 C 0.54 9.38 7.70 86.57 0.67 10.05 16 6 O -0.58 -13.86 12.97 -4.08 -0.05 -13.91 16 7 N -0.71 -9.58 5.54 -470.46 -2.61 -12.19 16 8 C 0.17 2.40 5.79 85.64 0.50 2.90 16 9 C -0.08 -1.25 5.25 -19.81 -0.10 -1.35 16 10 C -0.10 -1.79 9.68 22.23 0.22 -1.58 16 11 C -0.07 -1.85 9.60 22.52 0.22 -1.63 16 12 C -0.14 -3.94 5.87 -20.09 -0.12 -4.06 16 13 C 0.54 20.87 7.74 86.79 0.67 21.54 16 14 O -0.59 -27.37 16.01 -3.91 -0.06 -27.43 16 15 N -0.70 -27.62 5.02 -448.97 -2.25 -29.87 16 16 C 0.23 11.10 2.09 44.25 0.09 11.19 16 17 H 0.03 1.51 5.19 -2.39 -0.01 1.50 16 18 C -0.14 -6.14 9.03 71.98 0.65 -5.49 16 19 C -0.53 -28.36 9.07 25.60 0.23 -28.13 16 20 H 0.06 3.29 8.01 -2.91 -0.02 3.26 16 21 C 0.03 1.82 5.47 84.66 0.46 2.29 16 22 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 23 Si 0.92 43.97 26.31 68.60 1.80 45.77 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.25 -11.55 5.92 99.48 0.59 -10.96 16 27 C -0.09 -1.94 9.54 22.53 0.21 -1.73 16 28 C -0.10 -1.67 9.68 22.23 0.22 -1.46 16 29 H 0.09 1.78 5.25 -7.19 -0.04 1.74 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.36 8.12 -2.39 -0.02 0.34 16 34 H 0.08 0.32 8.06 -2.39 -0.02 0.30 16 35 H 0.15 1.09 8.04 -2.91 -0.02 1.06 16 36 H 0.41 3.97 8.45 -92.71 -0.78 3.18 16 37 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.13 3.39 7.65 -2.91 -0.02 3.36 16 41 H 0.41 13.92 6.59 -92.70 -0.61 13.30 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 2.19 6.81 -2.39 -0.02 2.18 16 45 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 46 H 0.14 2.85 6.41 -2.91 -0.02 2.83 16 47 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -72.52 390.95 1.97 -70.55 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.54 Total: 24.11 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.38 Total: -2.35 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.56 Total: -96.75 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.12 Total: -41.35 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.80 Total: 45.77 kcal Total: -72.52 1.97 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds