Wall clock time and date at job start Tue Mar 31 2020 16:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47175 * 2 1 4 4 C 1.46898 * 110.99834 * 297.53899 * 3 2 1 5 5 C 1.50696 * 109.47455 * 292.79707 * 4 3 2 6 6 H 1.08003 * 119.99932 * 354.99108 * 5 4 3 7 7 C 1.37879 * 120.00257 * 174.98445 * 5 4 3 8 8 N 1.31513 * 119.99520 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47409 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46692 * 120.00455 * 9 7 5 12 12 H 1.48498 * 109.47111 * 240.00041 * 9 7 5 13 13 C 1.46893 * 111.00068 * 61.49713 * 3 2 1 14 14 C 1.53006 * 109.47263 * 66.04463 * 13 3 2 15 15 C 1.52995 * 109.46988 * 180.02562 * 14 13 3 16 16 C 1.52997 * 109.47059 * 180.02562 * 15 14 13 17 17 N 1.46507 * 109.47167 * 180.02562 * 16 15 14 18 18 C 1.34527 * 124.45665 * 270.32568 * 17 16 15 19 19 O 1.21448 * 125.71125 * 359.76387 * 18 17 16 20 20 C 1.47811 * 108.57672 * 180.13216 * 18 17 16 21 21 C 1.38573 * 134.29529 * 179.88160 * 20 18 17 22 22 C 1.38611 * 119.71531 * 179.64366 * 21 20 18 23 23 C 1.38229 * 120.46128 * 0.03760 * 22 21 20 24 24 C 1.38609 * 120.46177 * 359.97438 * 23 22 21 25 25 C 1.38566 * 119.71684 * 359.97438 * 24 23 22 26 26 C 1.34516 * 124.46090 * 89.99947 * 17 16 15 27 27 O 1.21443 * 125.71538 * 0.05760 * 26 17 16 28 28 H 1.09000 * 109.47182 * 299.50872 * 1 2 3 29 29 H 1.09004 * 109.46712 * 59.50625 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.50768 * 1 2 3 31 31 H 1.09003 * 109.47335 * 239.99520 * 2 1 3 32 32 H 1.09004 * 109.46882 * 120.00236 * 2 1 3 33 33 H 1.09000 * 109.46753 * 52.80199 * 4 3 2 34 34 H 1.09001 * 109.46858 * 172.79500 * 4 3 2 35 35 H 0.97004 * 119.99609 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46901 * 306.04580 * 13 3 2 37 37 H 1.08994 * 109.47113 * 186.04252 * 13 3 2 38 38 H 1.08994 * 109.46990 * 59.99871 * 14 13 3 39 39 H 1.08994 * 109.46883 * 299.99929 * 14 13 3 40 40 H 1.09000 * 109.47834 * 60.00020 * 15 14 13 41 41 H 1.09003 * 109.47472 * 300.00191 * 15 14 13 42 42 H 1.09003 * 109.47638 * 59.99850 * 16 15 14 43 43 H 1.09001 * 109.47112 * 299.99790 * 16 15 14 44 44 H 1.07999 * 120.14142 * 359.66299 * 21 20 18 45 45 H 1.08003 * 119.76854 * 180.02562 * 22 21 20 46 46 H 1.08002 * 119.76979 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.14323 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5974 2.0927 -1.2160 5 6 2.2905 1.4934 -2.4124 6 1 3.0363 0.7243 -2.2753 7 6 1.9727 1.9269 -3.6821 8 7 1.0649 2.8636 -3.8490 9 14 2.8325 1.1845 -5.1650 10 1 3.8047 0.1579 -4.7110 11 1 1.8261 0.5529 -6.0559 12 1 3.5497 2.2522 -5.9072 13 6 1.5782 2.0995 1.2051 14 6 2.2404 1.4792 2.4372 15 6 1.7800 2.2230 3.6924 16 6 2.4427 1.6033 4.9243 17 7 2.0014 2.3151 6.1263 18 6 2.6199 3.3921 6.6432 19 8 3.6194 3.9179 6.1967 20 6 1.8844 3.8231 7.8508 21 6 2.0509 4.8446 8.7722 22 6 1.1511 4.9801 9.8179 23 6 0.0904 4.1034 9.9477 24 6 -0.0886 3.0768 9.0337 25 6 0.8023 2.9297 7.9827 26 6 0.9209 1.9815 6.8549 27 8 0.1687 1.0563 6.6246 28 1 -0.3633 0.5062 0.8944 29 1 -0.3633 0.5215 -0.8856 30 1 -0.3633 -1.0276 -0.0088 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5182 1.9971 -1.3357 34 1 1.8617 3.1469 -1.1332 35 1 0.8415 3.1689 -4.7423 36 1 0.4949 2.0218 1.2971 37 1 1.8622 3.1491 1.1298 38 1 3.3237 1.5569 2.3451 39 1 1.9565 0.4296 2.5125 40 1 0.6967 2.1451 3.7843 41 1 2.0636 3.2729 3.6172 42 1 3.5260 1.6816 4.8323 43 1 2.1595 0.5534 4.9997 44 1 2.8780 5.5323 8.6759 45 1 1.2799 5.7762 10.5363 46 1 -0.6042 4.2195 10.7665 47 1 -0.9189 2.3945 9.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:45 Heat of formation + Delta-G solvation = -20.483969 kcal Electronic energy + Delta-G solvation = -27173.376042 eV Core-core repulsion = 23321.916019 eV Total energy + Delta-G solvation = -3851.460023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64693 -38.98224 -38.91166 -37.63051 -36.27887 -34.55687 -32.62561 -31.75747 -31.66116 -29.48341 -28.45225 -26.17928 -25.48655 -24.32608 -23.34590 -22.59465 -22.48324 -21.06412 -20.20841 -19.00536 -18.19317 -17.56986 -16.89285 -16.53758 -16.14242 -15.78708 -15.55292 -15.13065 -14.91450 -14.80937 -14.63150 -14.52889 -14.27880 -14.06140 -13.47756 -13.12280 -13.05276 -12.85514 -12.55743 -12.40655 -12.23931 -11.84502 -11.59356 -11.34118 -11.30422 -11.09156 -10.86411 -10.77113 -10.61749 -10.59207 -10.45500 -10.36696 -10.08635 -9.95389 -9.75471 -9.71745 -9.55603 -9.11831 -8.39561 -7.11181 -5.98745 -3.99365 -0.38566 0.44543 1.59393 2.01588 2.61482 3.09543 3.20234 3.33130 3.40493 3.45687 3.90309 4.09077 4.33538 4.45067 4.52866 4.68354 4.69125 4.70580 4.89294 4.99057 5.17562 5.22790 5.25357 5.33467 5.36567 5.42667 5.55796 5.64801 5.70039 5.72004 5.82428 5.92768 6.01857 6.04070 6.05411 6.14457 6.24234 6.37520 6.44735 6.55950 6.63429 6.76112 6.87251 6.97045 7.34321 7.37475 7.49912 7.86719 8.16490 8.26867 8.62274 9.09402 9.64601 11.11972 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001970 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.707867 B =14209.718362 C =14601.428060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.536 5.536 4 C 0.188 3.812 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.053 3.947 14 C -0.110 4.110 15 C -0.134 4.134 16 C 0.111 3.889 17 N -0.574 5.574 18 C 0.572 3.428 19 O -0.457 6.457 20 C -0.139 4.139 21 C -0.046 4.046 22 C -0.097 4.097 23 C -0.097 4.097 24 C -0.046 4.046 25 C -0.139 4.139 26 C 0.573 3.427 27 O -0.459 6.459 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.002 0.998 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 2.206 31.558 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.260 5.260 4 C 0.062 3.938 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.076 4.076 14 C -0.148 4.148 15 C -0.173 4.173 16 C -0.008 4.008 17 N -0.316 5.316 18 C 0.361 3.639 19 O -0.328 6.328 20 C -0.142 4.142 21 C -0.065 4.065 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.065 4.065 25 C -0.143 4.143 26 C 0.361 3.639 27 O -0.330 6.330 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.020 0.980 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.165 2.024 30.950 31.038 hybrid contribution -0.596 -0.225 -0.984 1.173 sum -1.762 1.799 29.965 30.071 Atomic orbital electron populations 1.22387 0.99595 1.00884 1.01939 1.21984 0.91983 0.91682 1.01221 1.62326 1.59170 1.01893 1.02572 1.19782 0.94770 0.93673 0.85525 1.21206 1.21556 1.21224 0.90121 0.91876 1.24999 0.95376 0.95336 0.99073 1.69973 1.32317 1.29415 1.22262 0.86465 0.79419 0.79064 0.82615 1.19669 1.21194 1.21084 1.22027 0.96745 0.98188 0.90645 1.21492 1.01573 0.99372 0.92363 1.21932 1.00847 1.00864 0.93667 1.21930 1.01125 0.96612 0.81142 1.46656 1.27417 1.29799 1.27749 1.18380 0.83090 0.79246 0.83214 1.90835 1.22210 1.55757 1.63967 1.20627 0.97549 0.98646 0.97408 1.20837 0.98776 0.95141 0.91713 1.21485 0.93754 0.99030 0.97258 1.21481 0.97722 0.93762 0.98589 1.20827 0.97303 0.97116 0.91243 1.20624 0.98143 0.97827 0.97687 1.18377 0.79820 0.83570 0.82101 1.90824 1.42671 1.28522 1.71001 0.93682 0.91391 0.93524 0.90249 0.92903 0.97978 0.95876 0.93081 0.95506 0.91716 0.90903 0.91771 0.91516 0.91223 0.88288 0.88458 0.83954 0.84034 0.84044 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.06 1.17 5.67 -3.82 -0.02 1.15 16 3 N -0.54 -11.68 4.69 -236.07 -1.11 -12.79 16 4 C 0.19 4.94 4.54 -4.98 -0.02 4.92 16 5 C -0.50 -14.27 8.39 -34.44 -0.29 -14.56 16 6 H 0.06 1.79 7.39 -52.48 -0.39 1.40 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.05 0.96 4.74 -3.82 -0.02 0.94 16 14 C -0.11 -1.58 5.14 -26.73 -0.14 -1.71 16 15 C -0.13 -1.68 5.54 -26.74 -0.15 -1.83 16 16 C 0.11 1.23 5.74 -4.04 -0.02 1.20 16 17 N -0.57 -6.49 2.62 -117.61 -0.31 -6.80 16 18 C 0.57 6.52 8.02 -12.46 -0.10 6.42 16 19 O -0.46 -6.32 17.68 5.41 0.10 -6.22 16 20 C -0.14 -1.23 6.40 -104.83 -0.67 -1.90 16 21 C -0.05 -0.28 10.09 -39.32 -0.40 -0.68 16 22 C -0.10 -0.37 10.04 -39.45 -0.40 -0.77 16 23 C -0.10 -0.37 10.04 -39.45 -0.40 -0.77 16 24 C -0.05 -0.28 10.09 -39.32 -0.40 -0.67 16 25 C -0.14 -1.23 6.41 -104.83 -0.67 -1.90 16 26 C 0.57 6.48 8.02 -12.46 -0.10 6.38 16 27 O -0.46 -6.27 17.68 5.42 0.10 -6.17 16 28 H 0.04 0.78 6.33 -51.93 -0.33 0.45 16 29 H 0.07 1.46 6.28 -51.93 -0.33 1.14 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.70 6.98 -51.93 -0.36 1.34 16 32 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 33 H 0.00 0.07 6.02 -51.93 -0.31 -0.24 16 34 H 0.02 0.66 7.91 -51.93 -0.41 0.24 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.03 0.49 6.06 -51.93 -0.31 0.18 16 37 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.03 7.97 -51.93 -0.41 0.62 16 43 H 0.10 1.00 7.96 -51.93 -0.41 0.59 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 0.14 8.06 -52.48 -0.42 -0.28 16 46 H 0.14 0.14 8.06 -52.49 -0.42 -0.29 16 47 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -33.66 387.25 -10.09 -43.75 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.87 Total: -2.69 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.54 Total: -5.52 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.68 Total: -45.90 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.19 Total: -12.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.66 -10.09 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.262 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds