Wall clock time and date at job start Tue Mar 31 2020 16:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47175 * 2 1 4 4 C 1.46898 * 110.99834 * 297.53899 * 3 2 1 5 5 C 1.50696 * 109.47455 * 292.79707 * 4 3 2 6 6 H 1.08003 * 119.99932 * 354.99108 * 5 4 3 7 7 C 1.37879 * 120.00257 * 174.98445 * 5 4 3 8 8 N 1.31513 * 119.99520 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47409 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46692 * 120.00455 * 9 7 5 12 12 H 1.48498 * 109.47111 * 240.00041 * 9 7 5 13 13 C 1.46893 * 111.00068 * 61.49713 * 3 2 1 14 14 C 1.53006 * 109.47263 * 66.04463 * 13 3 2 15 15 C 1.52995 * 109.46988 * 180.02562 * 14 13 3 16 16 C 1.52997 * 109.47059 * 180.02562 * 15 14 13 17 17 N 1.46507 * 109.47167 * 180.02562 * 16 15 14 18 18 C 1.34527 * 124.45665 * 270.32568 * 17 16 15 19 19 O 1.21448 * 125.71125 * 359.76387 * 18 17 16 20 20 C 1.47811 * 108.57672 * 180.13216 * 18 17 16 21 21 C 1.38573 * 134.29529 * 179.88160 * 20 18 17 22 22 C 1.38611 * 119.71531 * 179.64366 * 21 20 18 23 23 C 1.38229 * 120.46128 * 0.03760 * 22 21 20 24 24 C 1.38609 * 120.46177 * 359.97438 * 23 22 21 25 25 C 1.38566 * 119.71684 * 359.97438 * 24 23 22 26 26 C 1.34516 * 124.46090 * 89.99947 * 17 16 15 27 27 O 1.21443 * 125.71538 * 0.05760 * 26 17 16 28 28 H 1.09000 * 109.47182 * 299.50872 * 1 2 3 29 29 H 1.09004 * 109.46712 * 59.50625 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.50768 * 1 2 3 31 31 H 1.09003 * 109.47335 * 239.99520 * 2 1 3 32 32 H 1.09004 * 109.46882 * 120.00236 * 2 1 3 33 33 H 1.09000 * 109.46753 * 52.80199 * 4 3 2 34 34 H 1.09001 * 109.46858 * 172.79500 * 4 3 2 35 35 H 0.97004 * 119.99609 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46901 * 306.04580 * 13 3 2 37 37 H 1.08994 * 109.47113 * 186.04252 * 13 3 2 38 38 H 1.08994 * 109.46990 * 59.99871 * 14 13 3 39 39 H 1.08994 * 109.46883 * 299.99929 * 14 13 3 40 40 H 1.09000 * 109.47834 * 60.00020 * 15 14 13 41 41 H 1.09003 * 109.47472 * 300.00191 * 15 14 13 42 42 H 1.09003 * 109.47638 * 59.99850 * 16 15 14 43 43 H 1.09001 * 109.47112 * 299.99790 * 16 15 14 44 44 H 1.07999 * 120.14142 * 359.66299 * 21 20 18 45 45 H 1.08003 * 119.76854 * 180.02562 * 22 21 20 46 46 H 1.08002 * 119.76979 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.14323 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5974 2.0927 -1.2160 5 6 2.2905 1.4934 -2.4124 6 1 3.0363 0.7243 -2.2753 7 6 1.9727 1.9269 -3.6821 8 7 1.0649 2.8636 -3.8490 9 14 2.8325 1.1845 -5.1650 10 1 3.8047 0.1579 -4.7110 11 1 1.8261 0.5529 -6.0559 12 1 3.5497 2.2522 -5.9072 13 6 1.5782 2.0995 1.2051 14 6 2.2404 1.4792 2.4372 15 6 1.7800 2.2230 3.6924 16 6 2.4427 1.6033 4.9243 17 7 2.0014 2.3151 6.1263 18 6 2.6199 3.3921 6.6432 19 8 3.6194 3.9179 6.1967 20 6 1.8844 3.8231 7.8508 21 6 2.0509 4.8446 8.7722 22 6 1.1511 4.9801 9.8179 23 6 0.0904 4.1034 9.9477 24 6 -0.0886 3.0768 9.0337 25 6 0.8023 2.9297 7.9827 26 6 0.9209 1.9815 6.8549 27 8 0.1687 1.0563 6.6246 28 1 -0.3633 0.5062 0.8944 29 1 -0.3633 0.5215 -0.8856 30 1 -0.3633 -1.0276 -0.0088 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5182 1.9971 -1.3357 34 1 1.8617 3.1469 -1.1332 35 1 0.8415 3.1689 -4.7423 36 1 0.4949 2.0218 1.2971 37 1 1.8622 3.1491 1.1298 38 1 3.3237 1.5569 2.3451 39 1 1.9565 0.4296 2.5125 40 1 0.6967 2.1451 3.7843 41 1 2.0636 3.2729 3.6172 42 1 3.5260 1.6816 4.8323 43 1 2.1595 0.5534 4.9997 44 1 2.8780 5.5323 8.6759 45 1 1.2799 5.7762 10.5363 46 1 -0.6042 4.2195 10.7665 47 1 -0.9189 2.3945 9.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:44 Heat of formation + Delta-G solvation = -41.455569 kcal Electronic energy + Delta-G solvation = -27174.285439 eV Core-core repulsion = 23321.916019 eV Total energy + Delta-G solvation = -3852.369420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41499 -39.82444 -39.57288 -39.21744 -37.25207 -35.70305 -34.63323 -32.66911 -32.11198 -31.08297 -29.88989 -27.77530 -26.22012 -25.46966 -25.08736 -23.52713 -23.22275 -22.38129 -20.98773 -20.60063 -18.83746 -18.42831 -18.32816 -17.74835 -17.17546 -17.11493 -16.68383 -16.46992 -16.28487 -15.69542 -15.61182 -15.41268 -15.22045 -15.02746 -14.83380 -14.66146 -14.18374 -13.76864 -13.65959 -13.52852 -13.23514 -13.18463 -13.13019 -12.81428 -12.70586 -12.61333 -12.40192 -12.37995 -12.15705 -11.85347 -11.82641 -11.59238 -11.46117 -11.28909 -11.22013 -10.91664 -10.61127 -10.21332 -10.18901 -8.92247 -8.19841 -6.29466 -1.03167 -0.00439 0.96761 1.21172 1.39455 1.40126 1.53968 1.78550 2.39868 2.57719 2.62656 3.12350 3.18110 3.29922 3.60174 3.75007 3.81195 4.05155 4.07491 4.11114 4.19125 4.22558 4.30161 4.32484 4.41807 4.46413 4.49730 4.58773 4.59195 4.71918 4.73682 4.84626 4.87471 4.95180 4.97048 5.02231 5.20171 5.21737 5.22498 5.28411 5.30310 5.38582 5.51108 5.54711 5.68290 5.70864 6.04836 6.08414 6.38020 6.49420 6.67990 6.88017 7.39955 8.91048 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001970 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.707867 B =14209.718362 C =14601.428060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 N -0.544 5.544 4 C 0.202 3.798 5 C -0.518 4.518 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.053 3.947 14 C -0.095 4.095 15 C -0.122 4.122 16 C 0.112 3.888 17 N -0.580 5.580 18 C 0.570 3.430 19 O -0.493 6.493 20 C -0.161 4.161 21 C -0.047 4.047 22 C -0.083 4.083 23 C -0.083 4.083 24 C -0.046 4.046 25 C -0.161 4.161 26 C 0.571 3.429 27 O -0.492 6.492 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.088 0.912 33 H -0.021 1.021 34 H -0.008 1.008 35 H 0.263 0.737 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.153 0.847 45 H 0.180 0.820 46 H 0.181 0.819 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 1.927 34.366 34.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.069 4.069 3 N -0.268 5.268 4 C 0.076 3.924 5 C -0.556 4.556 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.075 4.075 14 C -0.134 4.134 15 C -0.161 4.161 16 C -0.008 4.008 17 N -0.321 5.321 18 C 0.361 3.639 19 O -0.366 6.366 20 C -0.165 4.165 21 C -0.065 4.065 22 C -0.101 4.101 23 C -0.101 4.101 24 C -0.064 4.064 25 C -0.165 4.165 26 C 0.362 3.638 27 O -0.365 6.365 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.106 0.894 33 H -0.003 1.003 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.171 0.829 45 H 0.198 0.802 46 H 0.198 0.802 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.292 1.739 33.790 33.859 hybrid contribution -0.617 -0.062 -1.706 1.815 sum -1.909 1.677 32.084 32.185 Atomic orbital electron populations 1.22275 0.98756 1.02191 1.00623 1.22043 0.92692 0.90247 1.01907 1.62241 1.59596 1.02912 1.02010 1.19424 0.93109 0.92356 0.87490 1.21486 1.21659 1.21258 0.91195 0.92032 1.25931 0.96018 0.95660 1.02316 1.70102 1.33681 1.30695 1.23183 0.85334 0.78400 0.78383 0.78498 1.18695 1.20410 1.20505 1.22089 0.97073 0.97593 0.90775 1.21342 1.01173 0.99829 0.91019 1.21764 1.00559 1.00144 0.93666 1.21872 1.01271 0.96968 0.80689 1.46726 1.27674 1.29957 1.27708 1.18857 0.82587 0.78698 0.83783 1.90801 1.23789 1.56804 1.65244 1.20542 0.97831 1.00542 0.97567 1.21179 0.99599 0.94222 0.91512 1.21964 0.92328 0.99325 0.96447 1.21967 0.97804 0.91970 0.98314 1.21177 0.96817 0.97905 0.90543 1.20546 0.99752 0.97796 0.98359 1.18824 0.79040 0.83390 0.82543 1.90791 1.43670 1.30021 1.72060 0.92542 0.95112 0.90809 0.92255 0.89401 1.00349 0.99000 0.92807 0.95577 0.93093 0.90809 0.90472 0.91995 0.92245 0.87779 0.87510 0.82888 0.80248 0.80213 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.65 9.26 71.98 0.67 -5.99 16 2 C 0.06 2.30 5.67 86.30 0.49 2.79 16 3 N -0.54 -24.24 4.69 -900.80 -4.23 -28.47 16 4 C 0.20 11.17 4.54 85.56 0.39 11.56 16 5 C -0.52 -30.19 8.39 25.60 0.21 -29.97 16 6 H 0.06 3.54 7.39 -2.91 -0.02 3.51 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.05 1.98 4.74 86.31 0.41 2.39 16 14 C -0.10 -2.71 5.14 30.59 0.16 -2.55 16 15 C -0.12 -3.12 5.54 30.59 0.17 -2.95 16 16 C 0.11 2.49 5.74 86.38 0.50 2.99 16 17 N -0.58 -13.51 2.62 -762.95 -2.00 -15.51 16 18 C 0.57 13.43 8.02 86.82 0.70 14.13 16 19 O -0.49 -14.23 17.68 -3.55 -0.06 -14.29 16 20 C -0.16 -2.78 6.40 -20.00 -0.13 -2.90 16 21 C -0.05 -0.46 10.09 22.44 0.23 -0.24 16 22 C -0.08 -0.28 10.04 22.36 0.22 -0.06 16 23 C -0.08 -0.27 10.04 22.36 0.22 -0.05 16 24 C -0.05 -0.44 10.09 22.44 0.23 -0.22 16 25 C -0.16 -2.74 6.41 -20.00 -0.13 -2.86 16 26 C 0.57 13.19 8.02 86.82 0.70 13.88 16 27 O -0.49 -13.69 17.68 -3.54 -0.06 -13.75 16 28 H 0.06 1.93 6.33 -2.39 -0.02 1.92 16 29 H 0.03 1.35 6.28 -2.38 -0.01 1.34 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.55 6.98 -2.39 -0.02 2.53 16 32 H 0.09 2.82 6.40 -2.38 -0.02 2.81 16 33 H -0.02 -1.25 6.02 -2.39 -0.01 -1.26 16 34 H -0.01 -0.49 7.91 -2.39 -0.02 -0.51 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.03 0.98 6.06 -2.39 -0.01 0.96 16 37 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 2.01 6.52 -2.39 -0.02 1.99 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 2.20 7.97 -2.39 -0.02 2.18 16 43 H 0.11 2.17 7.96 -2.39 -0.02 2.15 16 44 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.18 -0.69 8.06 -2.91 -0.02 -0.71 16 46 H 0.18 -0.72 8.06 -2.91 -0.02 -0.75 16 47 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -76.94 387.25 2.42 -74.52 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.97 Total: 7.16 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.49 Total: 0.31 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -5.94 Total: -101.47 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.13 Total: -28.04 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.94 2.42 -74.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.060 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds