Wall clock time and date at job start Tue Mar 31 2020 16:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47003 * 2 1 4 4 C 1.38145 * 125.60964 * 85.55657 * 3 2 1 5 5 C 1.47067 * 125.42753 * 359.70794 * 4 3 2 6 6 O 1.21647 * 119.99719 * 335.50602 * 5 4 3 7 7 N 1.34768 * 119.99957 * 155.50751 * 5 4 3 8 8 C 1.46500 * 120.00173 * 184.18913 * 7 5 4 9 9 C 1.50704 * 109.47091 * 89.99960 * 8 7 5 10 10 H 1.07991 * 119.99844 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99665 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00396 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99741 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47035 * 60.00107 * 13 11 9 15 15 H 1.48494 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47325 * 300.00386 * 13 11 9 17 17 C 1.46505 * 120.00002 * 4.18996 * 7 5 4 18 18 C 1.52995 * 109.47192 * 84.58247 * 17 7 5 19 19 O 1.42901 * 109.47160 * 67.26179 * 18 17 7 20 20 C 1.42904 * 113.99778 * 180.02562 * 19 18 17 21 21 C 1.35866 * 109.14121 * 179.73875 * 4 3 2 22 22 C 1.41587 * 107.72520 * 0.02562 * 21 4 3 23 23 C 1.40104 * 133.37603 * 180.02562 * 22 21 4 24 24 C 1.36436 * 119.83095 * 180.02562 * 23 22 21 25 25 C 1.38941 * 120.61542 * 359.96380 * 24 23 22 26 26 C 1.37673 * 120.64610 * 0.02562 * 25 24 23 27 27 C 1.37483 * 125.60404 * 265.25456 * 3 2 1 28 28 H 1.09005 * 109.47198 * 185.07038 * 1 2 3 29 29 H 1.08997 * 109.47067 * 305.06847 * 1 2 3 30 30 H 1.08998 * 109.47148 * 65.07030 * 1 2 3 31 31 H 1.08999 * 109.47374 * 239.99768 * 2 1 3 32 32 H 1.09001 * 109.47141 * 119.99742 * 2 1 3 33 33 H 1.09004 * 109.47211 * 210.00200 * 8 7 5 34 34 H 1.09002 * 109.47059 * 330.00224 * 8 7 5 35 35 H 0.96996 * 120.00476 * 180.02562 * 12 11 9 36 36 H 1.09011 * 109.46995 * 204.58081 * 17 7 5 37 37 H 1.08999 * 109.47255 * 324.58008 * 17 7 5 38 38 H 1.09000 * 109.47253 * 187.25832 * 18 17 7 39 39 H 1.08996 * 109.47259 * 307.26059 * 18 17 7 40 40 H 1.09001 * 109.46958 * 299.99661 * 20 19 18 41 41 H 1.08997 * 109.47329 * 59.99610 * 20 19 18 42 42 H 1.08996 * 109.46901 * 180.02562 * 20 19 18 43 43 H 1.08007 * 126.13549 * 180.02562 * 21 4 3 44 44 H 1.08002 * 120.08700 * 359.97438 * 23 22 21 45 45 H 1.07991 * 119.69529 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.67697 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.09151 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2044 2.1686 1.1197 5 6 1.9378 1.7560 2.5059 6 8 1.1355 0.8702 2.7332 7 7 2.5822 2.3591 3.5243 8 6 2.3861 1.8872 4.8973 9 6 3.4064 0.8242 5.2137 10 1 4.1284 0.5294 4.4666 11 6 3.4175 0.2274 6.4566 12 7 2.5373 0.5854 7.3658 13 14 4.6817 -1.0907 6.8485 14 1 6.0471 -0.5235 6.7107 15 1 4.4823 -1.5698 8.2398 16 1 4.5205 -2.2271 5.9062 17 6 3.4788 3.4868 3.2584 18 6 2.6647 4.7803 3.1888 19 8 2.1313 5.0775 4.4808 20 6 1.3493 6.2728 4.5258 21 6 2.6723 3.3851 0.7362 22 6 2.7891 3.3767 -0.6748 23 6 3.2103 4.3301 -1.6111 24 6 3.2120 4.0215 -2.9401 25 6 2.8001 2.7682 -3.3760 26 6 2.3820 1.8144 -2.4756 27 6 2.3723 2.1050 -1.1140 28 1 -0.3634 -1.0237 0.0908 29 1 -0.3633 0.5904 0.8411 30 1 -0.3633 0.4332 -0.9319 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.5043 2.7216 5.5887 34 1 1.3840 1.4706 4.9987 35 1 2.5453 0.1659 8.2403 36 1 4.2142 3.5630 4.0594 37 1 3.9906 3.3281 2.3092 38 1 3.3086 5.5979 2.8647 39 1 1.8477 4.6576 2.4779 40 1 1.9657 7.1215 4.2293 41 1 0.5050 6.1806 3.8427 42 1 0.9814 6.4282 5.5400 43 1 2.9121 4.2104 1.3903 44 1 3.5320 5.3070 -1.2818 45 1 3.5366 4.7581 -3.6600 46 1 2.8079 2.5400 -4.4316 47 1 2.0633 0.8431 -2.8243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081729138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:35 Heat of formation + Delta-G solvation = 6.375062 kcal Electronic energy + Delta-G solvation = -29222.793858 eV Core-core repulsion = 25372.498530 eV Total energy + Delta-G solvation = -3850.295328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65544 -39.03066 -37.61325 -36.82310 -35.23667 -33.79782 -32.65606 -31.11591 -30.03664 -29.26743 -28.40197 -26.98933 -26.06744 -24.12788 -23.48597 -22.78852 -22.17559 -21.36268 -20.43383 -18.66359 -17.16790 -16.79678 -16.55110 -16.43019 -15.83799 -15.51174 -15.27567 -15.06201 -14.72991 -14.41913 -14.36391 -14.14334 -13.79767 -13.70962 -13.41089 -13.09604 -12.73903 -12.59963 -12.26025 -11.99691 -11.96295 -11.84085 -11.66278 -11.45491 -11.24360 -11.15320 -11.04765 -10.93165 -10.86485 -10.73560 -10.45584 -10.15345 -9.72403 -9.61853 -9.42285 -9.15806 -8.39762 -8.13136 -7.70009 -7.59306 -6.01161 -4.06194 0.92771 1.65868 2.36009 2.71304 3.33080 3.37299 3.39707 3.74072 3.89295 3.93493 4.00513 4.45972 4.65018 4.73313 4.81901 4.98546 5.10509 5.20570 5.24047 5.32996 5.36242 5.38376 5.39398 5.43044 5.47869 5.52868 5.55539 5.64696 5.69737 5.70958 5.82706 5.84938 5.89605 5.95731 6.03549 6.24177 6.33116 6.44029 6.59368 6.73293 6.76314 7.14598 7.18480 7.35290 7.38758 7.48417 7.55912 7.95229 8.25595 8.33907 8.83210 9.01335 9.57912 11.06731 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.004190 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.812510 B = 6681.546891 C = 8024.629897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.447 5.447 4 C 0.053 3.947 5 C 0.563 3.437 6 O -0.534 6.534 7 N -0.568 5.568 8 C 0.251 3.749 9 C -0.530 4.530 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.094 3.906 18 C 0.032 3.968 19 O -0.371 6.371 20 C 0.032 3.968 21 C -0.193 4.193 22 C -0.111 4.111 23 C -0.067 4.067 24 C -0.153 4.153 25 C -0.102 4.102 26 C -0.126 4.126 27 C 0.101 3.899 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.084 0.916 43 H 0.169 0.831 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 9.112 -18.201 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.127 5.127 4 C -0.058 4.058 5 C 0.349 3.651 6 O -0.413 6.413 7 N -0.297 5.297 8 C 0.133 3.867 9 C -0.569 4.569 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.030 4.030 18 C -0.046 4.046 19 O -0.290 6.290 20 C -0.065 4.065 21 C -0.218 4.218 22 C -0.115 4.115 23 C -0.086 4.086 24 C -0.172 4.172 25 C -0.121 4.121 26 C -0.146 4.146 27 C -0.008 4.008 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.186 0.814 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.501 8.099 -17.605 19.385 hybrid contribution 0.625 -0.544 0.006 0.828 sum 0.123 7.555 -17.599 19.153 Atomic orbital electron populations 1.22096 0.94131 1.03151 1.02705 1.21825 0.96026 0.79309 1.04074 1.44165 1.52912 1.12105 1.03549 1.20441 1.04790 0.91951 0.88609 1.17140 0.82305 0.82923 0.82771 1.90775 1.34889 1.31048 1.84579 1.47947 1.42190 1.30484 1.09093 1.19394 0.98148 0.95097 0.74058 1.21405 1.15870 1.21187 0.98423 0.92617 1.24898 0.95979 0.96912 0.96078 1.69930 1.35136 1.42686 1.05283 0.86588 0.81633 0.82035 0.77314 1.20225 1.21173 1.20328 1.21987 0.92969 0.84185 1.03898 1.23406 0.97675 0.97472 0.86041 1.88084 1.68878 1.42577 1.29428 1.22713 0.94319 0.86964 1.02531 1.21879 1.07744 0.98132 0.94069 1.18230 1.05676 0.94008 0.93628 1.20340 0.98182 0.97926 0.92153 1.20546 1.04010 0.97149 0.95487 1.20762 0.99387 0.93318 0.98658 1.20018 1.05072 1.00245 0.89260 1.18379 1.02057 0.91969 0.88428 0.90987 0.90485 0.93006 0.89992 0.88260 0.93494 0.93833 0.92682 0.88520 0.88437 0.92517 0.92389 0.94545 0.94486 0.89735 0.81430 0.86109 0.86315 0.86042 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.07 37.16 0.37 -1.86 16 2 C 0.11 1.57 6.03 -4.04 -0.02 1.55 16 3 N -0.45 -7.20 2.82 -110.36 -0.31 -7.52 16 4 C 0.05 0.95 6.46 -82.29 -0.53 0.42 16 5 C 0.56 12.09 7.43 -12.68 -0.09 12.00 16 6 O -0.53 -13.09 13.75 5.24 0.07 -13.02 16 7 N -0.57 -12.26 2.44 -176.45 -0.43 -12.69 16 8 C 0.25 6.64 5.17 -5.19 -0.03 6.61 16 9 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.09 1.58 5.31 -4.04 -0.02 1.56 16 18 C 0.03 0.46 4.50 37.16 0.17 0.62 16 19 O -0.37 -6.29 10.30 -35.23 -0.36 -6.65 16 20 C 0.03 0.40 11.01 101.05 1.11 1.51 16 21 C -0.19 -2.91 7.58 -39.16 -0.30 -3.21 16 22 C -0.11 -1.58 6.16 -106.93 -0.66 -2.24 16 23 C -0.07 -0.78 10.06 -39.53 -0.40 -1.17 16 24 C -0.15 -1.56 9.97 -39.97 -0.40 -1.96 16 25 C -0.10 -1.05 10.01 -39.53 -0.40 -1.44 16 26 C -0.13 -1.51 9.91 -39.42 -0.39 -1.90 16 27 C 0.10 1.47 6.81 -83.98 -0.57 0.90 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.30 7.02 -51.93 -0.36 0.93 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.10 1.66 7.23 -51.93 -0.38 1.28 16 33 H 0.05 1.29 7.69 -51.93 -0.40 0.89 16 34 H 0.04 1.30 7.37 -51.93 -0.38 0.91 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.69 8.03 -51.92 -0.42 1.28 16 37 H 0.10 1.45 5.26 -51.93 -0.27 1.17 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.84 6.27 -51.93 -0.33 0.51 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.17 2.20 3.05 -52.48 -0.16 2.04 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.18 7.94 -52.48 -0.42 0.76 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -33.70 381.70 -9.02 -42.72 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.88 Total: 2.61 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.58 Total: -2.22 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.01 Total: -46.04 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.29 Total: -19.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.70 -9.02 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081729138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.094 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds