Wall clock time and date at job start Tue Mar 31 2020 16:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47003 * 2 1 4 4 C 1.38145 * 125.60964 * 85.55657 * 3 2 1 5 5 C 1.47067 * 125.42753 * 359.70794 * 4 3 2 6 6 O 1.21647 * 119.99719 * 335.50602 * 5 4 3 7 7 N 1.34768 * 119.99957 * 155.50751 * 5 4 3 8 8 C 1.46500 * 120.00173 * 184.18913 * 7 5 4 9 9 C 1.50704 * 109.47091 * 89.99960 * 8 7 5 10 10 H 1.07991 * 119.99844 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99665 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00396 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99741 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47035 * 60.00107 * 13 11 9 15 15 H 1.48494 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47325 * 300.00386 * 13 11 9 17 17 C 1.46505 * 120.00002 * 4.18996 * 7 5 4 18 18 C 1.52995 * 109.47192 * 84.58247 * 17 7 5 19 19 O 1.42901 * 109.47160 * 67.26179 * 18 17 7 20 20 C 1.42904 * 113.99778 * 180.02562 * 19 18 17 21 21 C 1.35866 * 109.14121 * 179.73875 * 4 3 2 22 22 C 1.41587 * 107.72520 * 0.02562 * 21 4 3 23 23 C 1.40104 * 133.37603 * 180.02562 * 22 21 4 24 24 C 1.36436 * 119.83095 * 180.02562 * 23 22 21 25 25 C 1.38941 * 120.61542 * 359.96380 * 24 23 22 26 26 C 1.37673 * 120.64610 * 0.02562 * 25 24 23 27 27 C 1.37483 * 125.60404 * 265.25456 * 3 2 1 28 28 H 1.09005 * 109.47198 * 185.07038 * 1 2 3 29 29 H 1.08997 * 109.47067 * 305.06847 * 1 2 3 30 30 H 1.08998 * 109.47148 * 65.07030 * 1 2 3 31 31 H 1.08999 * 109.47374 * 239.99768 * 2 1 3 32 32 H 1.09001 * 109.47141 * 119.99742 * 2 1 3 33 33 H 1.09004 * 109.47211 * 210.00200 * 8 7 5 34 34 H 1.09002 * 109.47059 * 330.00224 * 8 7 5 35 35 H 0.96996 * 120.00476 * 180.02562 * 12 11 9 36 36 H 1.09011 * 109.46995 * 204.58081 * 17 7 5 37 37 H 1.08999 * 109.47255 * 324.58008 * 17 7 5 38 38 H 1.09000 * 109.47253 * 187.25832 * 18 17 7 39 39 H 1.08996 * 109.47259 * 307.26059 * 18 17 7 40 40 H 1.09001 * 109.46958 * 299.99661 * 20 19 18 41 41 H 1.08997 * 109.47329 * 59.99610 * 20 19 18 42 42 H 1.08996 * 109.46901 * 180.02562 * 20 19 18 43 43 H 1.08007 * 126.13549 * 180.02562 * 21 4 3 44 44 H 1.08002 * 120.08700 * 359.97438 * 23 22 21 45 45 H 1.07991 * 119.69529 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.67697 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.09151 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2044 2.1686 1.1197 5 6 1.9378 1.7560 2.5059 6 8 1.1355 0.8702 2.7332 7 7 2.5822 2.3591 3.5243 8 6 2.3861 1.8872 4.8973 9 6 3.4064 0.8242 5.2137 10 1 4.1284 0.5294 4.4666 11 6 3.4175 0.2274 6.4566 12 7 2.5373 0.5854 7.3658 13 14 4.6817 -1.0907 6.8485 14 1 6.0471 -0.5235 6.7107 15 1 4.4823 -1.5698 8.2398 16 1 4.5205 -2.2271 5.9062 17 6 3.4788 3.4868 3.2584 18 6 2.6647 4.7803 3.1888 19 8 2.1313 5.0775 4.4808 20 6 1.3493 6.2728 4.5258 21 6 2.6723 3.3851 0.7362 22 6 2.7891 3.3767 -0.6748 23 6 3.2103 4.3301 -1.6111 24 6 3.2120 4.0215 -2.9401 25 6 2.8001 2.7682 -3.3760 26 6 2.3820 1.8144 -2.4756 27 6 2.3723 2.1050 -1.1140 28 1 -0.3634 -1.0237 0.0908 29 1 -0.3633 0.5904 0.8411 30 1 -0.3633 0.4332 -0.9319 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.5043 2.7216 5.5887 34 1 1.3840 1.4706 4.9987 35 1 2.5453 0.1659 8.2403 36 1 4.2142 3.5630 4.0594 37 1 3.9906 3.3281 2.3092 38 1 3.3086 5.5979 2.8647 39 1 1.8477 4.6576 2.4779 40 1 1.9657 7.1215 4.2293 41 1 0.5050 6.1806 3.8427 42 1 0.9814 6.4282 5.5400 43 1 2.9121 4.2104 1.3903 44 1 3.5320 5.3070 -1.2818 45 1 3.5366 4.7581 -3.6600 46 1 2.8079 2.5400 -4.4316 47 1 2.0633 0.8431 -2.8243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081729138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:34 Heat of formation + Delta-G solvation = -14.002481 kcal Electronic energy + Delta-G solvation = -29223.677494 eV Core-core repulsion = 25372.498530 eV Total energy + Delta-G solvation = -3851.178965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79295 -40.51543 -38.87896 -37.86423 -36.79244 -35.27198 -34.51699 -32.17571 -31.47549 -30.43811 -29.50870 -28.78759 -27.17896 -25.68785 -24.69855 -24.21516 -23.57689 -22.38699 -21.57594 -20.10406 -18.67389 -18.33643 -18.02593 -17.72046 -17.06602 -16.82941 -16.76361 -16.38902 -16.15164 -15.82852 -15.44123 -15.32453 -15.15293 -14.96712 -14.54830 -14.30609 -14.13623 -14.01226 -13.68714 -13.50255 -13.16384 -13.11328 -13.06804 -12.82203 -12.71327 -12.59914 -12.41546 -12.24535 -12.16002 -12.14557 -11.97363 -11.74887 -11.66234 -10.88345 -10.70789 -10.62875 -10.53715 -9.55967 -9.10739 -8.63198 -8.21582 -6.37155 -0.12504 0.74893 1.17246 1.35612 1.39583 1.46848 1.53827 2.24003 2.34668 2.44232 2.87935 3.02338 3.07637 3.41929 3.67317 3.73483 4.02679 4.07931 4.15749 4.19169 4.26733 4.28426 4.36229 4.40584 4.41104 4.50460 4.53731 4.58881 4.62193 4.71567 4.79019 4.86191 4.87520 4.89537 4.91219 5.10976 5.14722 5.17543 5.23843 5.51595 5.58296 5.71709 5.74672 5.78928 5.83827 6.05139 6.13185 6.31097 6.33617 6.63670 6.71486 7.19443 7.36197 8.85556 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.004190 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.812510 B = 6681.546891 C = 8024.629897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.456 5.456 4 C 0.009 3.991 5 C 0.558 3.442 6 O -0.582 6.582 7 N -0.576 5.576 8 C 0.275 3.725 9 C -0.547 4.547 10 H 0.052 0.948 11 C 0.011 3.989 12 N -0.926 5.926 13 Si 0.968 3.032 14 H -0.260 1.260 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.090 3.910 18 C 0.036 3.964 19 O -0.414 6.414 20 C 0.027 3.973 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.068 4.068 24 C -0.150 4.150 25 C -0.086 4.086 26 C -0.143 4.143 27 C 0.089 3.911 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.185 0.815 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 10.733 -21.913 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.137 5.137 4 C -0.101 4.101 5 C 0.346 3.654 6 O -0.464 6.464 7 N -0.305 5.305 8 C 0.154 3.846 9 C -0.585 4.585 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.792 3.208 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.032 4.032 18 C -0.041 4.041 19 O -0.334 6.334 20 C -0.069 4.069 21 C -0.191 4.191 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.169 4.169 25 C -0.105 4.105 26 C -0.164 4.164 27 C -0.019 4.019 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.202 0.798 44 H 0.165 0.835 45 H 0.171 0.829 46 H 0.173 0.827 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.530 9.768 -21.343 23.522 hybrid contribution -0.017 -0.932 0.972 1.347 sum 1.513 8.836 -20.371 22.256 Atomic orbital electron populations 1.21998 0.93841 1.03440 1.01803 1.21841 0.96296 0.79284 1.03906 1.44204 1.53540 1.12337 1.03612 1.19879 1.09326 0.93878 0.87024 1.17686 0.81257 0.82005 0.84422 1.90726 1.36879 1.33197 1.85636 1.47844 1.43222 1.31993 1.07396 1.18716 0.95152 0.93898 0.76793 1.21661 1.16163 1.21969 0.98714 0.93000 1.25836 0.98073 0.99152 0.95782 1.70062 1.36780 1.43938 1.05745 0.85476 0.79388 0.78725 0.77258 1.18497 1.20170 1.20305 1.22279 0.92579 0.83906 1.04477 1.23411 0.98019 0.97324 0.85310 1.88029 1.69791 1.44731 1.30823 1.22893 0.94657 0.86461 1.02929 1.22082 1.04875 0.97035 0.95157 1.18478 1.07286 0.94944 0.93367 1.20702 0.97268 0.98374 0.92285 1.21018 1.02515 0.97773 0.95578 1.21271 0.96514 0.92684 1.00061 1.20347 1.05979 1.01815 0.88234 1.18837 1.02006 0.92084 0.89007 0.89545 0.94446 0.91138 0.86654 0.91708 0.95232 0.98680 0.92371 0.89615 0.86161 0.87838 0.92502 0.91499 0.94016 0.89763 0.79830 0.83541 0.82947 0.82690 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 10.07 71.98 0.73 -3.67 16 2 C 0.11 3.24 6.03 86.38 0.52 3.76 16 3 N -0.46 -14.94 2.82 -503.06 -1.42 -16.36 16 4 C 0.01 0.33 6.46 39.92 0.26 0.59 16 5 C 0.56 25.84 7.43 86.56 0.64 26.48 16 6 O -0.58 -31.43 13.75 -4.18 -0.06 -31.49 16 7 N -0.58 -26.57 2.44 -830.42 -2.03 -28.59 16 8 C 0.28 15.70 5.17 85.63 0.44 16.14 16 9 C -0.55 -32.62 9.39 25.60 0.24 -32.38 16 10 H 0.05 3.06 7.81 -2.92 -0.02 3.03 16 11 C 0.01 0.64 5.46 84.66 0.46 1.10 16 12 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 13 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 14 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 C 0.09 3.10 5.31 86.38 0.46 3.56 16 18 C 0.04 1.01 4.50 71.98 0.32 1.34 16 19 O -0.41 -14.26 10.30 -148.98 -1.53 -15.79 16 20 C 0.03 0.65 11.01 113.37 1.25 1.90 16 21 C -0.17 -4.85 7.58 22.55 0.17 -4.68 16 22 C -0.14 -3.58 6.16 -21.36 -0.13 -3.71 16 23 C -0.07 -1.28 10.06 22.30 0.22 -1.05 16 24 C -0.15 -2.28 9.97 22.02 0.22 -2.06 16 25 C -0.09 -1.35 10.01 22.30 0.22 -1.12 16 26 C -0.14 -2.97 9.91 22.37 0.22 -2.75 16 27 C 0.09 2.47 6.81 39.13 0.27 2.74 16 28 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.04 1.36 7.02 -2.39 -0.02 1.35 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.12 2.58 7.91 -2.39 -0.02 2.56 16 32 H 0.06 2.37 7.23 -2.39 -0.02 2.36 16 33 H 0.03 1.76 7.69 -2.39 -0.02 1.74 16 34 H 0.00 -0.32 7.37 -2.39 -0.02 -0.34 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.09 3.10 8.03 -2.38 -0.02 3.08 16 37 H 0.12 3.53 5.26 -2.39 -0.01 3.51 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.61 6.27 -2.39 -0.01 1.60 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.19 4.51 3.05 -2.91 -0.01 4.50 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.15 1.33 8.06 -2.92 -0.02 1.31 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.13 2.24 7.94 -2.91 -0.02 2.22 16 Total: -1.00 -80.48 381.70 4.76 -75.71 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.97 Total: 19.68 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.52 Total: 6.19 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.16 Total: -102.20 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -1.59 Total: -47.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -80.48 4.76 -75.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081729138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.711 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds