Wall clock time and date at job start Tue Mar 31 2020 15:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00300 * 2 1 4 4 C 1.38755 * 120.05530 * 0.02646 * 3 2 1 5 5 C 1.38115 * 119.94546 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05570 * 359.74313 * 5 4 3 7 7 C 1.38245 * 120.11041 * 0.51036 * 6 5 4 8 8 C 1.50703 * 119.97216 * 179.76678 * 7 6 5 9 9 H 1.09002 * 109.47152 * 179.72349 * 8 7 6 10 10 C 1.53002 * 109.46966 * 59.72489 * 8 7 6 11 11 C 1.53000 * 109.46912 * 299.72577 * 8 7 6 12 12 C 1.50703 * 109.46801 * 184.99967 * 11 8 7 13 13 O 1.21280 * 120.00262 * 0.02562 * 12 11 8 14 14 N 1.34776 * 119.99815 * 179.97438 * 12 11 8 15 15 C 1.46497 * 119.99939 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47589 * 90.00159 * 15 14 12 17 17 H 1.08002 * 119.99536 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00473 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00142 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99480 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47420 * 90.00283 * 20 18 16 22 22 H 1.48500 * 109.46821 * 210.00128 * 20 18 16 23 23 H 1.48500 * 109.47162 * 329.99677 * 20 18 16 24 24 C 1.46500 * 120.00185 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47154 * 89.99699 * 24 14 12 26 26 C 1.47193 * 109.47271 * 179.97438 * 25 24 14 27 27 N 9.79182 * 116.74848 * 326.24054 * 2 1 3 28 28 C 1.38167 * 120.05500 * 359.48834 * 7 6 5 29 29 H 1.09007 * 109.47149 * 299.99388 * 1 2 3 30 30 H 1.08997 * 109.47297 * 59.99415 * 1 2 3 31 31 H 1.08996 * 109.47543 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.02644 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.97629 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.94715 * 180.28045 * 6 5 4 35 35 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47075 * 299.99352 * 10 8 7 37 37 H 1.08996 * 109.47407 * 60.00310 * 10 8 7 38 38 H 1.09002 * 109.47069 * 304.99691 * 11 8 7 39 39 H 1.08991 * 109.47625 * 65.00010 * 11 8 7 40 40 H 1.09000 * 109.47433 * 210.00029 * 15 14 12 41 41 H 1.09004 * 109.47370 * 329.99721 * 15 14 12 42 42 H 0.96996 * 119.99991 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47327 * 210.00076 * 24 14 12 44 44 H 1.09002 * 109.46742 * 330.00123 * 24 14 12 45 45 H 1.09002 * 109.47312 * 300.00386 * 25 24 14 46 46 H 1.09008 * 109.47024 * 60.00104 * 25 24 14 47 47 H 1.07996 * 120.02719 * 180.27359 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9209 3.6046 0.0011 6 6 3.3020 3.6756 0.0064 7 6 4.0560 2.5170 0.0006 8 6 5.5608 2.5980 0.0011 9 1 5.9789 1.5913 0.0010 10 6 6.0309 3.3453 1.2508 11 6 6.0317 3.3460 -1.2477 12 6 7.5372 3.3206 -1.3107 13 8 8.1711 2.7591 -0.4425 14 7 8.1792 3.9210 -2.3324 15 6 9.6426 3.8958 -2.3939 16 6 10.0925 2.6776 -3.1585 17 1 9.3613 1.9906 -3.5583 18 6 11.4375 2.4396 -3.3468 19 7 11.8300 1.3763 -4.0137 20 14 12.7020 3.6276 -2.6547 21 1 13.0742 3.2086 -1.2795 22 1 13.9104 3.6224 -3.5178 23 1 12.1268 4.9961 -2.6167 24 6 7.4135 4.5988 -3.3814 25 6 7.1997 6.0628 -2.9917 26 6 6.4310 6.7440 -4.0460 27 7 5.8360 7.2696 -4.8591 28 6 3.4311 1.2847 0.0001 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2128 2.3203 0.0006 33 1 1.3341 4.5113 0.0019 34 1 3.7923 4.6379 0.0114 35 1 7.1193 3.4043 1.2510 36 1 5.6129 4.3520 1.2509 37 1 5.6954 2.8124 2.1405 38 1 5.6227 2.8640 -2.1357 39 1 5.6873 4.3792 -1.2039 40 1 10.0006 4.7937 -2.8977 41 1 10.0483 3.8605 -1.3827 42 1 12.7761 1.2090 -4.1465 43 1 7.9628 4.5495 -4.3216 44 1 6.4467 4.1094 -3.4994 45 1 6.6504 6.1121 -2.0515 46 1 8.1666 6.5523 -2.8737 47 1 4.0206 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084547906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:11 Heat of formation + Delta-G solvation = -27.706803 kcal Electronic energy + Delta-G solvation = -27754.466291 eV Core-core repulsion = 23902.693062 eV Total energy + Delta-G solvation = -3851.773229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44054 -39.55746 -37.98066 -36.92666 -35.49170 -34.52618 -32.78776 -31.06290 -30.95076 -29.65120 -28.60838 -27.53757 -26.92455 -24.08265 -23.53977 -22.73550 -22.16430 -20.20927 -18.45870 -17.82437 -17.69938 -16.84700 -16.57833 -16.41818 -16.14999 -15.95655 -15.56028 -15.06066 -14.72654 -14.58174 -14.13066 -13.81765 -13.74393 -13.54669 -13.40913 -13.05485 -12.89788 -12.58466 -12.54705 -12.48599 -12.40205 -12.15669 -12.00717 -11.69876 -11.59933 -11.44236 -11.32693 -11.10652 -11.01184 -10.83724 -10.75255 -10.62716 -10.54417 -10.20162 -9.58000 -9.07116 -8.90716 -8.62243 -8.33199 -7.89177 -6.11554 -4.11062 1.18693 1.32108 2.67646 2.76222 3.04993 3.24004 3.26397 3.31668 3.34269 3.53592 3.65386 4.12757 4.36196 4.58619 4.61671 4.81169 4.85281 4.86655 4.92060 4.98077 5.06177 5.10051 5.17435 5.20186 5.20762 5.25152 5.35579 5.37871 5.48467 5.60061 5.71295 5.74140 5.84119 5.92503 6.02380 6.11269 6.15575 6.23327 6.29788 6.50705 6.56529 6.60649 6.69739 6.87848 7.21036 7.22285 7.52528 7.56405 8.10113 8.42457 8.85334 8.93374 9.48069 11.01799 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003002 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.987296 B = 9326.058631 C =10561.910504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.151 4.151 7 C -0.030 4.030 8 C -0.038 4.038 9 H 0.090 0.910 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.511 3.489 13 O -0.528 6.528 14 N -0.593 5.593 15 C 0.214 3.786 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.265 1.265 24 C 0.117 3.883 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.443 5.443 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.811 5.329 8.960 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.170 4.170 7 C -0.030 4.030 8 C -0.057 4.057 9 H 0.109 0.891 10 C -0.204 4.204 11 C -0.175 4.175 12 C 0.298 3.702 13 O -0.405 6.405 14 N -0.325 5.325 15 C 0.094 3.906 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.010 4.010 25 C -0.092 4.092 26 C -0.102 4.102 27 N -0.120 5.120 28 C -0.165 4.165 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.133 0.867 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.085 5.513 8.145 23.266 hybrid contribution 0.609 0.435 0.417 0.856 sum -20.477 5.948 8.562 22.978 Atomic orbital electron populations 1.23030 0.78586 1.03832 1.01222 1.86083 1.21214 1.27097 1.88772 1.19015 0.92301 0.84067 0.96477 1.21175 0.99771 0.92510 1.10081 1.20893 0.94621 0.96820 0.97510 1.20930 0.93486 0.98242 1.04295 1.19766 0.95629 0.92033 0.95600 1.19925 0.89066 1.01732 0.94933 0.89119 1.21953 1.03728 0.98867 0.95874 1.21824 0.93818 1.02225 0.99639 1.20351 0.89363 0.78740 0.81718 1.90656 1.68485 1.42905 1.38432 1.47895 1.08555 1.53212 1.22792 1.19711 0.74930 0.97731 0.98225 1.21312 0.93071 1.07920 1.34606 0.90680 1.24861 0.98291 0.95178 0.94650 1.69888 1.16004 1.26714 1.40825 0.86872 0.81483 0.81862 0.79568 1.19912 1.21166 1.18996 1.21330 0.97824 0.88665 0.93132 1.19897 0.99723 0.96420 0.93172 1.29075 0.93438 0.93509 0.94214 1.81231 1.10426 1.09737 1.10616 1.20403 0.91207 0.98509 1.06425 0.92780 0.92722 0.88334 0.85847 0.85987 0.85828 0.89719 0.93261 0.92977 0.88988 0.89333 0.95112 0.94253 0.92526 0.88619 0.90190 0.87472 0.86724 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.48 10.50 -19.41 -0.20 -3.68 16 3 C 0.13 1.44 6.69 -39.22 -0.26 1.17 16 4 C -0.22 -2.09 9.04 -39.44 -0.36 -2.44 16 5 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 6 C -0.15 -1.50 8.76 -39.56 -0.35 -1.84 16 7 C -0.03 -0.34 4.78 -104.64 -0.50 -0.84 16 8 C -0.04 -0.47 2.21 -91.77 -0.20 -0.67 16 9 H 0.09 1.30 7.69 -51.93 -0.40 0.90 16 10 C -0.15 -1.78 8.74 37.16 0.32 -1.46 16 11 C -0.13 -1.65 3.47 -27.88 -0.10 -1.75 16 12 C 0.51 8.71 7.39 -10.98 -0.08 8.63 16 13 O -0.53 -11.18 13.55 5.56 0.08 -11.11 16 14 N -0.59 -10.18 2.46 -175.06 -0.43 -10.61 16 15 C 0.21 4.64 4.23 -5.19 -0.02 4.62 16 16 C -0.53 -14.26 9.94 -34.44 -0.34 -14.60 16 17 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 20 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 24 C 0.12 1.47 5.17 -4.04 -0.02 1.45 16 25 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 26 C 0.22 2.46 15.43 -20.75 -0.32 2.14 16 27 N -0.44 -6.28 18.54 42.17 0.78 -5.50 16 28 C -0.15 -1.77 9.61 -39.43 -0.38 -2.15 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.12 0.91 6.30 -52.48 -0.33 0.58 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.12 1.02 7.15 -52.48 -0.38 0.65 16 35 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 36 H 0.05 0.50 7.37 -51.93 -0.38 0.12 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 39 H 0.09 0.82 6.63 -51.93 -0.34 0.48 16 40 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 41 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 45 H 0.11 0.77 7.22 -51.93 -0.38 0.40 16 46 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 47 H 0.13 1.57 7.94 -52.49 -0.42 1.15 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -34.31 390.35 -6.95 -41.26 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.87 Total: 0.40 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.29 Total: -6.42 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 1.13 Total: -42.19 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.13 Total: -14.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.31 -6.95 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084547906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.554 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds