Wall clock time and date at job start Tue Mar 31 2020 15:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00300 * 2 1 4 4 C 1.38755 * 120.05530 * 0.02646 * 3 2 1 5 5 C 1.38115 * 119.94546 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05570 * 359.74313 * 5 4 3 7 7 C 1.38245 * 120.11041 * 0.51036 * 6 5 4 8 8 C 1.50703 * 119.97216 * 179.76678 * 7 6 5 9 9 H 1.09002 * 109.47152 * 179.72349 * 8 7 6 10 10 C 1.53002 * 109.46966 * 59.72489 * 8 7 6 11 11 C 1.53000 * 109.46912 * 299.72577 * 8 7 6 12 12 C 1.50703 * 109.46801 * 184.99967 * 11 8 7 13 13 O 1.21280 * 120.00262 * 0.02562 * 12 11 8 14 14 N 1.34776 * 119.99815 * 179.97438 * 12 11 8 15 15 C 1.46497 * 119.99939 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47589 * 90.00159 * 15 14 12 17 17 H 1.08002 * 119.99536 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00473 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00142 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99480 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47420 * 90.00283 * 20 18 16 22 22 H 1.48500 * 109.46821 * 210.00128 * 20 18 16 23 23 H 1.48500 * 109.47162 * 329.99677 * 20 18 16 24 24 C 1.46500 * 120.00185 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47154 * 89.99699 * 24 14 12 26 26 C 1.47193 * 109.47271 * 179.97438 * 25 24 14 27 27 N 9.79182 * 116.74848 * 326.24054 * 2 1 3 28 28 C 1.38167 * 120.05500 * 359.48834 * 7 6 5 29 29 H 1.09007 * 109.47149 * 299.99388 * 1 2 3 30 30 H 1.08997 * 109.47297 * 59.99415 * 1 2 3 31 31 H 1.08996 * 109.47543 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.02644 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.97629 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.94715 * 180.28045 * 6 5 4 35 35 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47075 * 299.99352 * 10 8 7 37 37 H 1.08996 * 109.47407 * 60.00310 * 10 8 7 38 38 H 1.09002 * 109.47069 * 304.99691 * 11 8 7 39 39 H 1.08991 * 109.47625 * 65.00010 * 11 8 7 40 40 H 1.09000 * 109.47433 * 210.00029 * 15 14 12 41 41 H 1.09004 * 109.47370 * 329.99721 * 15 14 12 42 42 H 0.96996 * 119.99991 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47327 * 210.00076 * 24 14 12 44 44 H 1.09002 * 109.46742 * 330.00123 * 24 14 12 45 45 H 1.09002 * 109.47312 * 300.00386 * 25 24 14 46 46 H 1.09008 * 109.47024 * 60.00104 * 25 24 14 47 47 H 1.07996 * 120.02719 * 180.27359 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9209 3.6046 0.0011 6 6 3.3020 3.6756 0.0064 7 6 4.0560 2.5170 0.0006 8 6 5.5608 2.5980 0.0011 9 1 5.9789 1.5913 0.0010 10 6 6.0309 3.3453 1.2508 11 6 6.0317 3.3460 -1.2477 12 6 7.5372 3.3206 -1.3107 13 8 8.1711 2.7591 -0.4425 14 7 8.1792 3.9210 -2.3324 15 6 9.6426 3.8958 -2.3939 16 6 10.0925 2.6776 -3.1585 17 1 9.3613 1.9906 -3.5583 18 6 11.4375 2.4396 -3.3468 19 7 11.8300 1.3763 -4.0137 20 14 12.7020 3.6276 -2.6547 21 1 13.0742 3.2086 -1.2795 22 1 13.9104 3.6224 -3.5178 23 1 12.1268 4.9961 -2.6167 24 6 7.4135 4.5988 -3.3814 25 6 7.1997 6.0628 -2.9917 26 6 6.4310 6.7440 -4.0460 27 7 5.8360 7.2696 -4.8591 28 6 3.4311 1.2847 0.0001 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2128 2.3203 0.0006 33 1 1.3341 4.5113 0.0019 34 1 3.7923 4.6379 0.0114 35 1 7.1193 3.4043 1.2510 36 1 5.6129 4.3520 1.2509 37 1 5.6954 2.8124 2.1405 38 1 5.6227 2.8640 -2.1357 39 1 5.6873 4.3792 -1.2039 40 1 10.0006 4.7937 -2.8977 41 1 10.0483 3.8605 -1.3827 42 1 12.7761 1.2090 -4.1465 43 1 7.9628 4.5495 -4.3216 44 1 6.4467 4.1094 -3.4994 45 1 6.6504 6.1121 -2.0515 46 1 8.1666 6.5523 -2.8737 47 1 4.0206 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084547906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:10 Heat of formation + Delta-G solvation = -48.569747 kcal Electronic energy + Delta-G solvation = -27755.370976 eV Core-core repulsion = 23902.693062 eV Total energy + Delta-G solvation = -3852.677914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31100 -40.72720 -38.81873 -37.95205 -36.74858 -35.53857 -34.74335 -32.31318 -31.74742 -30.68945 -29.83368 -28.26763 -28.11234 -25.18768 -24.78061 -23.58129 -23.47679 -21.13520 -19.73193 -19.11896 -18.65933 -18.40281 -17.70735 -17.30118 -17.03824 -16.73281 -16.60817 -16.28133 -15.96967 -15.66362 -15.44570 -14.74469 -14.69362 -14.62875 -14.39732 -14.31388 -14.03612 -13.81653 -13.66853 -13.52131 -13.40402 -13.23128 -13.00278 -12.92218 -12.72688 -12.56682 -12.37027 -12.26169 -12.18139 -11.94747 -11.84056 -11.70586 -11.67799 -11.63405 -11.51763 -10.75595 -10.45368 -9.73328 -9.38118 -9.08752 -8.26271 -6.30715 0.40896 0.55668 1.39738 1.44000 1.51360 1.73374 1.89478 1.93032 2.31917 2.38073 2.43753 2.85822 3.09001 3.19302 3.67388 3.87001 3.98682 4.01617 4.12333 4.15373 4.21472 4.29664 4.32939 4.40408 4.47692 4.53852 4.56831 4.65783 4.71364 4.74719 4.78654 4.86210 4.92221 4.96659 5.04461 5.12197 5.14794 5.20035 5.30597 5.40044 5.49949 5.55702 5.60020 5.70582 5.75841 5.92837 6.31903 6.51306 6.65907 6.72707 6.76986 7.30414 7.53710 8.90933 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003002 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.987296 B = 9326.058631 C =10561.910504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.112 3.888 4 C -0.216 4.216 5 C -0.077 4.077 6 C -0.151 4.151 7 C -0.035 4.035 8 C -0.034 4.034 9 H 0.055 0.945 10 C -0.141 4.141 11 C -0.123 4.123 12 C 0.505 3.495 13 O -0.578 6.578 14 N -0.596 5.596 15 C 0.222 3.778 16 C -0.532 4.532 17 H 0.026 0.974 18 C 0.006 3.994 19 N -0.952 5.952 20 Si 0.946 3.054 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.225 1.225 24 C 0.111 3.889 25 C -0.037 4.037 26 C 0.245 3.755 27 N -0.492 5.492 28 C -0.175 4.175 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.143 0.857 46 H 0.128 0.872 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.976 9.029 9.905 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.067 3.933 4 C -0.235 4.235 5 C -0.095 4.095 6 C -0.169 4.169 7 C -0.035 4.035 8 C -0.053 4.053 9 H 0.074 0.926 10 C -0.198 4.198 11 C -0.162 4.162 12 C 0.294 3.706 13 O -0.458 6.458 14 N -0.327 5.327 15 C 0.100 3.900 16 C -0.571 4.571 17 H 0.045 0.955 18 C -0.191 4.191 19 N -0.593 5.593 20 Si 0.768 3.232 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.148 1.148 24 C -0.014 4.014 25 C -0.078 4.078 26 C -0.072 4.072 27 N -0.170 5.170 28 C -0.194 4.194 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.161 0.839 46 H 0.146 0.854 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.309 9.246 9.070 26.666 hybrid contribution 1.165 -0.878 0.111 1.463 sum -22.144 8.368 9.181 25.390 Atomic orbital electron populations 1.23311 0.76490 1.05342 1.02296 1.86048 1.23510 1.27422 1.88855 1.19171 0.92193 0.84989 0.96953 1.21494 1.00962 0.92048 1.08970 1.21290 0.94616 0.97688 0.95897 1.21195 0.93932 0.98335 1.03447 1.19606 0.94631 0.92527 0.96733 1.19795 0.90095 1.00029 0.95402 0.92618 1.21874 1.01906 1.00410 0.95612 1.21834 0.89720 1.04884 0.99771 1.21208 0.91281 0.77346 0.80720 1.90643 1.69946 1.44794 1.40391 1.47865 1.07129 1.53768 1.23927 1.19389 0.78030 0.96039 0.96575 1.21655 0.92298 1.08923 1.34192 0.95519 1.25890 1.00980 0.97188 0.95061 1.70069 1.16500 1.29446 1.43235 0.85750 0.78247 0.81180 0.77981 1.20408 1.21099 1.14751 1.21520 0.97865 0.90802 0.91202 1.19874 1.00782 0.93465 0.93687 1.29224 0.92237 0.92386 0.93385 1.81280 1.12313 1.11377 1.12055 1.20458 0.92057 0.98507 1.08348 0.91515 0.91678 0.86817 0.83559 0.82892 0.83334 0.92508 0.90330 0.93158 0.88224 0.84939 0.92304 0.95528 0.92596 0.90145 0.88130 0.83942 0.85365 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.47 10.50 -92.37 -0.97 -8.44 16 3 C 0.11 2.47 6.69 22.51 0.15 2.62 16 4 C -0.22 -3.57 9.04 22.36 0.20 -3.37 16 5 C -0.08 -1.10 10.04 22.25 0.22 -0.88 16 6 C -0.15 -2.43 8.76 22.28 0.20 -2.23 16 7 C -0.03 -0.75 4.78 -19.88 -0.10 -0.84 16 8 C -0.03 -0.84 2.21 -11.54 -0.03 -0.86 16 9 H 0.06 1.72 7.69 -2.39 -0.02 1.71 16 10 C -0.14 -3.26 8.74 71.98 0.63 -2.63 16 11 C -0.12 -2.75 3.47 29.85 0.10 -2.64 16 12 C 0.50 16.89 7.39 87.66 0.65 17.54 16 13 O -0.58 -25.16 13.55 -3.03 -0.04 -25.20 16 14 N -0.60 -19.67 2.46 -826.15 -2.03 -21.70 16 15 C 0.22 9.41 4.23 85.63 0.36 9.77 16 16 C -0.53 -29.43 9.94 25.60 0.25 -29.17 16 17 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 18 C 0.01 0.34 5.47 84.66 0.46 0.81 16 19 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 20 Si 0.95 42.25 27.47 68.60 1.88 44.13 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.23 -8.53 6.54 99.48 0.65 -7.87 16 24 C 0.11 2.51 5.17 86.38 0.45 2.96 16 25 C -0.04 -0.53 6.03 28.79 0.17 -0.36 16 26 C 0.24 4.72 15.43 89.44 1.38 6.10 16 27 N -0.49 -12.77 18.54 20.01 0.37 -12.40 16 28 C -0.17 -4.32 9.61 22.37 0.21 -4.10 16 29 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 30 H 0.06 0.61 7.66 -2.39 -0.02 0.60 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 33 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.15 1.60 7.15 -2.91 -0.02 1.58 16 35 H 0.06 1.66 5.95 -2.39 -0.01 1.65 16 36 H 0.08 1.32 7.37 -2.39 -0.02 1.30 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 2.14 7.40 -2.39 -0.02 2.12 16 39 H 0.13 1.78 6.63 -2.39 -0.02 1.77 16 40 H 0.06 2.19 7.13 -2.39 -0.02 2.17 16 41 H 0.03 1.21 6.85 -2.38 -0.02 1.20 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 44 H 0.10 1.87 6.44 -2.39 -0.02 1.86 16 45 H 0.14 1.16 7.22 -2.39 -0.02 1.14 16 46 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.11 3.03 7.94 -2.91 -0.02 3.01 16 Total: -1.00 -81.60 390.35 6.87 -74.72 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.92 Total: 14.00 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.44 Total: -5.96 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -1.36 Total: -93.25 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.01 Total: -33.64 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Total: -81.60 6.87 -74.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084547906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.151 kcal (2) G-P(sol) polarization free energy of solvation -81.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds