Wall clock time and date at job start Tue Mar 31 2020 15:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47579 * 2 1 4 4 C 1.50707 * 109.46864 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99819 * 240.00098 * 4 2 1 6 6 C 1.37874 * 119.99767 * 60.00412 * 4 2 1 7 7 N 1.31518 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47100 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47095 * 300.00575 * 8 6 4 11 11 H 1.48509 * 109.46542 * 60.00054 * 8 6 4 12 12 N 1.46498 * 109.46913 * 120.00590 * 2 1 3 13 13 C 1.46496 * 120.00385 * 59.99982 * 12 2 1 14 14 C 1.34786 * 119.99900 * 239.99263 * 12 2 1 15 15 O 1.21552 * 119.99545 * 6.99047 * 14 12 2 16 16 C 1.47839 * 120.00051 * 186.98467 * 14 12 2 17 17 C 1.39606 * 120.14649 * 20.30425 * 16 14 12 18 18 C 1.37933 * 119.85147 * 179.74125 * 17 16 14 19 19 C 1.38379 * 120.14643 * 0.53432 * 18 17 16 20 20 C 1.38339 * 120.29211 * 359.74002 * 19 18 17 21 21 C 1.50702 * 119.92481 * 180.02562 * 20 19 18 22 22 N 1.46499 * 109.47060 * 269.97909 * 21 20 19 23 23 C 1.46762 * 124.35157 * 90.00133 * 22 21 20 24 24 C 1.54487 * 105.47221 * 197.01667 * 23 22 21 25 25 C 1.54628 * 101.76294 * 334.58329 * 24 23 22 26 26 C 1.34419 * 124.34698 * 269.70017 * 22 21 20 27 27 O 1.21284 * 124.94198 * 359.57975 * 26 22 21 28 28 C 1.37978 * 120.14829 * 359.97438 * 20 19 18 29 29 H 1.09000 * 109.47176 * 59.99467 * 1 2 3 30 30 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46932 * 299.99629 * 1 2 3 32 32 H 0.97002 * 119.99703 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47669 * 85.92450 * 13 12 2 34 34 H 1.09003 * 109.47213 * 205.93270 * 13 12 2 35 35 H 1.09002 * 109.47013 * 325.92214 * 13 12 2 36 36 H 1.07995 * 120.06647 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.92279 * 180.27326 * 18 17 16 38 38 H 1.08005 * 119.85415 * 179.76024 * 19 18 17 39 39 H 1.09005 * 109.47135 * 29.97794 * 21 20 19 40 40 H 1.09000 * 109.46957 * 149.98026 * 21 20 19 41 41 H 1.08997 * 110.24738 * 316.01618 * 23 22 21 42 42 H 1.08994 * 110.24515 * 77.92860 * 23 22 21 43 43 H 1.09000 * 110.96777 * 92.70427 * 24 23 22 44 44 H 1.09002 * 110.96729 * 216.42854 * 24 23 22 45 45 H 1.09005 * 110.48229 * 143.47967 * 25 24 23 46 46 H 1.09004 * 110.48485 * 265.98669 * 25 24 23 47 47 H 1.07994 * 120.07216 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8267 -0.4197 -5.2204 10 1 3.8073 -1.1191 -4.0078 11 1 1.8277 -2.5197 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 2.9828 1.1584 1.9594 16 6 3.4126 -0.7700 3.2072 17 6 3.5653 -2.1560 3.1399 18 6 4.1489 -2.8342 4.1897 19 6 4.5725 -2.1451 5.3125 20 6 4.4190 -0.7724 5.3879 21 6 4.8839 -0.0302 6.6143 22 7 3.7901 0.0400 7.5865 23 6 3.5418 -0.9641 8.6275 24 6 2.0917 -0.7179 9.1000 25 6 1.8979 0.7773 8.7570 26 6 2.8886 1.0355 7.6431 27 8 2.8703 1.9989 6.9067 28 6 3.8422 -0.0811 4.3423 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7090 1.1616 -3.4843 33 1 2.3752 -2.7377 0.9107 34 1 1.6943 -2.3037 2.4970 35 1 0.6601 -2.2821 1.0485 36 1 3.2306 -2.6955 2.2662 37 1 4.2715 -3.9059 4.1370 38 1 5.0253 -2.6814 6.1334 39 1 5.7306 -0.5547 7.0573 40 1 5.1872 0.9789 6.3352 41 1 3.6384 -1.9680 8.2141 42 1 4.2377 -0.8292 9.4554 43 1 1.3896 -1.3398 8.5446 44 1 1.9967 -0.8882 10.1725 45 1 0.8792 0.9615 8.4157 46 1 2.1280 1.4000 9.6216 47 1 3.7233 0.9906 4.4024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:30 Heat of formation + Delta-G solvation = -17.304407 kcal Electronic energy + Delta-G solvation = -28367.797967 eV Core-core repulsion = 24516.475820 eV Total energy + Delta-G solvation = -3851.322147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67962 -39.85597 -38.03965 -36.51977 -35.42402 -34.02094 -32.85338 -31.09737 -30.77545 -29.07828 -27.82840 -26.76627 -25.94720 -25.21083 -23.69704 -22.29658 -21.67687 -20.88303 -19.64983 -18.68633 -17.05119 -16.96230 -16.52092 -16.40485 -16.01755 -15.68054 -15.36038 -14.81470 -14.58269 -14.24980 -14.17804 -13.97509 -13.86512 -13.53246 -13.13556 -12.99214 -12.87955 -12.60282 -12.49960 -12.30642 -12.10483 -11.86692 -11.72811 -11.52410 -11.35139 -11.19568 -11.06817 -10.90696 -10.67800 -10.57741 -10.25309 -10.13152 -9.94912 -9.17839 -9.09669 -8.93561 -8.80690 -8.67564 -8.41514 -7.57630 -6.05793 -4.14456 1.05154 1.36126 2.46440 2.81959 3.28400 3.33624 3.34705 3.41533 3.92023 4.08349 4.13924 4.15249 4.40887 4.46193 4.65754 4.70850 4.78428 4.95112 5.00660 5.10779 5.16649 5.21434 5.25107 5.34690 5.36480 5.45468 5.49787 5.61437 5.63555 5.70435 5.90880 5.98190 6.05920 6.23784 6.27994 6.40057 6.48992 6.53695 6.79661 6.85312 6.93165 6.96348 7.08448 7.45557 7.54348 7.72406 8.03604 8.03722 8.20062 8.52459 8.83427 9.05246 9.51964 10.99478 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.002814 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.176219 B = 9948.113409 C =10485.146067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.075 3.925 14 C 0.543 3.457 15 O -0.545 6.545 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.136 4.136 19 C -0.091 4.091 20 C -0.128 4.128 21 C 0.169 3.831 22 N -0.617 5.617 23 C 0.102 3.898 24 C -0.132 4.132 25 C -0.156 4.156 26 C 0.513 3.487 27 O -0.521 6.521 28 C -0.043 4.043 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -10.216 24.849 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.330 3.670 15 O -0.424 6.424 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.154 4.154 19 C -0.110 4.110 20 C -0.129 4.129 21 C 0.048 3.952 22 N -0.352 5.352 23 C -0.021 4.021 24 C -0.170 4.170 25 C -0.196 4.196 26 C 0.301 3.699 27 O -0.396 6.396 28 C -0.062 4.062 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.559 -8.927 24.159 26.155 hybrid contribution 0.319 -0.755 -0.940 1.247 sum 4.878 -9.682 23.219 25.625 Atomic orbital electron populations 1.22088 0.98171 0.99345 1.00964 1.18971 0.91035 0.94524 0.79588 0.91812 1.21274 1.32000 1.13062 0.90263 0.92323 1.24896 0.94941 0.94980 0.98949 1.69879 1.36230 1.22502 1.23890 0.86539 0.79241 0.79530 0.81972 1.21141 1.20232 1.20236 1.48126 1.48610 1.11592 1.23326 1.22147 1.01384 0.83578 0.99740 1.18256 0.79698 0.86896 0.82138 1.90735 1.62157 1.14531 1.75000 1.20282 1.02090 0.94008 0.95976 1.22460 0.95887 0.93780 0.99950 1.21075 1.00170 0.99952 0.94155 1.21090 0.98790 0.93313 0.97815 1.20054 1.02466 0.94178 0.96236 1.20228 0.87721 1.01501 0.85740 1.48351 1.30379 1.24130 1.32346 1.22072 0.96835 0.92802 0.90389 1.22588 0.96101 0.95710 1.02575 1.22334 1.00719 0.97755 0.98790 1.20965 0.82183 0.81989 0.84796 1.90788 1.73436 1.30326 1.45066 1.21253 0.93180 1.00797 0.90978 0.88729 0.95103 0.96872 0.92590 0.92621 0.91509 0.91118 0.82882 0.85670 0.86286 0.89417 0.88953 0.90368 0.91073 0.89903 0.89204 0.87985 0.87937 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.94 37.16 0.33 -3.32 16 2 C 0.26 6.86 2.63 -69.08 -0.18 6.68 16 3 H 0.06 1.97 6.92 -51.93 -0.36 1.61 16 4 C -0.53 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.06 1.57 7.53 -52.49 -0.40 1.17 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.59 -13.22 2.75 -176.38 -0.49 -13.71 16 13 C 0.07 1.30 7.92 59.84 0.47 1.77 16 14 C 0.54 12.45 7.52 -12.33 -0.09 12.36 16 15 O -0.54 -14.73 15.88 5.32 0.08 -14.65 16 16 C -0.12 -2.17 5.57 -104.97 -0.58 -2.76 16 17 C -0.10 -1.48 7.61 -39.18 -0.30 -1.77 16 18 C -0.14 -1.52 10.03 -39.64 -0.40 -1.92 16 19 C -0.09 -0.95 9.69 -39.49 -0.38 -1.33 16 20 C -0.13 -1.60 5.46 -104.68 -0.57 -2.18 16 21 C 0.17 1.72 6.06 -5.19 -0.03 1.69 16 22 N -0.62 -6.03 2.92 -173.78 -0.51 -6.54 16 23 C 0.10 0.58 7.35 -3.12 -0.02 0.56 16 24 C -0.13 -0.66 7.18 -25.09 -0.18 -0.84 16 25 C -0.16 -1.20 6.86 -26.74 -0.18 -1.38 16 26 C 0.51 6.34 8.02 -10.86 -0.09 6.25 16 27 O -0.52 -9.12 17.59 5.55 0.10 -9.02 16 28 C -0.04 -0.72 9.24 -39.18 -0.36 -1.08 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 30 H 0.03 0.69 6.68 -51.93 -0.35 0.35 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 34 H 0.07 0.98 5.21 -51.93 -0.27 0.70 16 35 H 0.07 1.22 6.44 -51.93 -0.33 0.89 16 36 H 0.15 2.10 4.04 -52.49 -0.21 1.89 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.13 2.59 7.79 -52.49 -0.41 2.18 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -36.01 380.02 -9.20 -45.20 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.77 Total: 2.04 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.95 Total: -0.36 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.36 Total: -45.17 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.01 -9.20 -45.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.899 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds