Wall clock time and date at job start Tue Mar 31 2020 15:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47579 * 2 1 4 4 C 1.50707 * 109.46864 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99819 * 240.00098 * 4 2 1 6 6 C 1.37874 * 119.99767 * 60.00412 * 4 2 1 7 7 N 1.31518 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47100 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47095 * 300.00575 * 8 6 4 11 11 H 1.48509 * 109.46542 * 60.00054 * 8 6 4 12 12 N 1.46498 * 109.46913 * 120.00590 * 2 1 3 13 13 C 1.46496 * 120.00385 * 59.99982 * 12 2 1 14 14 C 1.34786 * 119.99900 * 239.99263 * 12 2 1 15 15 O 1.21552 * 119.99545 * 6.99047 * 14 12 2 16 16 C 1.47839 * 120.00051 * 186.98467 * 14 12 2 17 17 C 1.39606 * 120.14649 * 20.30425 * 16 14 12 18 18 C 1.37933 * 119.85147 * 179.74125 * 17 16 14 19 19 C 1.38379 * 120.14643 * 0.53432 * 18 17 16 20 20 C 1.38339 * 120.29211 * 359.74002 * 19 18 17 21 21 C 1.50702 * 119.92481 * 180.02562 * 20 19 18 22 22 N 1.46499 * 109.47060 * 269.97909 * 21 20 19 23 23 C 1.46762 * 124.35157 * 90.00133 * 22 21 20 24 24 C 1.54487 * 105.47221 * 197.01667 * 23 22 21 25 25 C 1.54628 * 101.76294 * 334.58329 * 24 23 22 26 26 C 1.34419 * 124.34698 * 269.70017 * 22 21 20 27 27 O 1.21284 * 124.94198 * 359.57975 * 26 22 21 28 28 C 1.37978 * 120.14829 * 359.97438 * 20 19 18 29 29 H 1.09000 * 109.47176 * 59.99467 * 1 2 3 30 30 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46932 * 299.99629 * 1 2 3 32 32 H 0.97002 * 119.99703 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47669 * 85.92450 * 13 12 2 34 34 H 1.09003 * 109.47213 * 205.93270 * 13 12 2 35 35 H 1.09002 * 109.47013 * 325.92214 * 13 12 2 36 36 H 1.07995 * 120.06647 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.92279 * 180.27326 * 18 17 16 38 38 H 1.08005 * 119.85415 * 179.76024 * 19 18 17 39 39 H 1.09005 * 109.47135 * 29.97794 * 21 20 19 40 40 H 1.09000 * 109.46957 * 149.98026 * 21 20 19 41 41 H 1.08997 * 110.24738 * 316.01618 * 23 22 21 42 42 H 1.08994 * 110.24515 * 77.92860 * 23 22 21 43 43 H 1.09000 * 110.96777 * 92.70427 * 24 23 22 44 44 H 1.09002 * 110.96729 * 216.42854 * 24 23 22 45 45 H 1.09005 * 110.48229 * 143.47967 * 25 24 23 46 46 H 1.09004 * 110.48485 * 265.98669 * 25 24 23 47 47 H 1.07994 * 120.07216 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8267 -0.4197 -5.2204 10 1 3.8073 -1.1191 -4.0078 11 1 1.8277 -2.5197 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 2.9828 1.1584 1.9594 16 6 3.4126 -0.7700 3.2072 17 6 3.5653 -2.1560 3.1399 18 6 4.1489 -2.8342 4.1897 19 6 4.5725 -2.1451 5.3125 20 6 4.4190 -0.7724 5.3879 21 6 4.8839 -0.0302 6.6143 22 7 3.7901 0.0400 7.5865 23 6 3.5418 -0.9641 8.6275 24 6 2.0917 -0.7179 9.1000 25 6 1.8979 0.7773 8.7570 26 6 2.8886 1.0355 7.6431 27 8 2.8703 1.9989 6.9067 28 6 3.8422 -0.0811 4.3423 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7090 1.1616 -3.4843 33 1 2.3752 -2.7377 0.9107 34 1 1.6943 -2.3037 2.4970 35 1 0.6601 -2.2821 1.0485 36 1 3.2306 -2.6955 2.2662 37 1 4.2715 -3.9059 4.1370 38 1 5.0253 -2.6814 6.1334 39 1 5.7306 -0.5547 7.0573 40 1 5.1872 0.9789 6.3352 41 1 3.6384 -1.9680 8.2141 42 1 4.2377 -0.8292 9.4554 43 1 1.3896 -1.3398 8.5446 44 1 1.9967 -0.8882 10.1725 45 1 0.8792 0.9615 8.4157 46 1 2.1280 1.4000 9.6216 47 1 3.7233 0.9906 4.4024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:29 Heat of formation + Delta-G solvation = -41.469752 kcal Electronic energy + Delta-G solvation = -28368.845855 eV Core-core repulsion = 24516.475820 eV Total energy + Delta-G solvation = -3852.370035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65894 -41.16376 -39.41222 -37.45083 -37.32896 -35.28590 -34.40813 -32.46810 -31.78374 -30.76254 -28.43414 -28.18310 -27.36417 -26.98314 -25.12765 -23.05132 -22.55036 -22.48435 -20.74387 -20.13852 -18.59859 -18.02401 -17.78508 -17.72030 -17.16320 -17.13311 -16.52852 -16.32426 -16.18264 -15.57095 -15.37347 -14.82942 -14.74385 -14.68424 -14.54462 -14.42565 -14.14434 -13.76041 -13.62003 -13.49157 -13.35742 -13.03144 -12.99506 -12.90991 -12.77251 -12.74359 -12.40125 -12.25269 -12.20260 -12.15801 -11.89090 -11.76903 -11.24598 -10.90762 -10.81050 -10.55549 -9.97604 -9.84998 -9.67206 -9.40960 -8.18121 -6.36538 -0.09864 0.28531 1.39554 1.43202 1.50724 1.55173 1.82998 2.17423 2.22666 2.44267 2.89184 3.09481 3.44666 3.58457 3.66819 3.72448 3.92946 4.06435 4.09684 4.14778 4.24812 4.30651 4.42781 4.54791 4.58375 4.59547 4.66154 4.74512 4.76230 4.79063 4.88200 4.89942 4.91722 4.97225 5.00593 5.11827 5.26542 5.32958 5.39507 5.42378 5.46114 5.56586 5.60188 5.60676 5.93940 5.98597 6.08493 6.16134 6.68683 6.71169 7.16193 7.21394 7.38638 8.86868 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.002814 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.176219 B = 9948.113409 C =10485.146067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.001 0.999 4 C -0.541 4.541 5 H 0.066 0.934 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.257 1.257 12 N -0.592 5.592 13 C 0.071 3.929 14 C 0.528 3.472 15 O -0.611 6.611 16 C -0.150 4.150 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.064 4.064 20 C -0.122 4.122 21 C 0.166 3.834 22 N -0.614 5.614 23 C 0.096 3.904 24 C -0.121 4.121 25 C -0.153 4.153 26 C 0.491 3.509 27 O -0.595 6.595 28 C -0.069 4.069 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.266 0.734 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.137 0.863 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.093 0.907 46 H 0.121 0.879 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -16.207 27.772 32.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.019 0.981 4 C -0.579 4.579 5 H 0.084 0.916 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.181 1.181 12 N -0.321 5.321 13 C -0.070 4.070 14 C 0.319 3.681 15 O -0.495 6.495 16 C -0.154 4.154 17 C -0.123 4.123 18 C -0.135 4.135 19 C -0.083 4.083 20 C -0.123 4.123 21 C 0.045 3.955 22 N -0.346 5.346 23 C -0.025 4.025 24 C -0.158 4.158 25 C -0.193 4.193 26 C 0.281 3.719 27 O -0.476 6.476 28 C -0.089 4.089 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.193 0.807 39 H 0.155 0.845 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.142 0.858 45 H 0.112 0.888 46 H 0.139 0.861 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.008 -15.021 27.134 31.591 hybrid contribution -0.077 1.116 -1.720 2.052 sum 5.931 -13.905 25.414 29.570 Atomic orbital electron populations 1.21884 0.97079 1.00363 0.99777 1.18587 0.91833 0.92008 0.81603 0.98086 1.21524 1.32304 1.13315 0.90774 0.91570 1.25843 0.94941 0.95629 1.02305 1.70043 1.37242 1.23943 1.24653 0.85403 0.78363 0.79073 0.77544 1.20916 1.20194 1.18127 1.48122 1.48326 1.13614 1.22011 1.22476 1.01817 0.80480 1.02217 1.19230 0.79175 0.86564 0.83176 1.90676 1.64478 1.17614 1.76776 1.19921 1.05027 0.95708 0.94701 1.22544 0.96489 0.91610 1.01636 1.21605 0.97341 1.02055 0.92473 1.21668 0.96052 0.91725 0.98812 1.20293 1.01056 0.95619 0.95348 1.20317 0.89268 1.00339 0.85609 1.48535 1.29232 1.24321 1.32515 1.22479 0.97698 0.92373 0.89958 1.22652 0.95758 0.92768 1.04664 1.22385 0.98744 1.00710 0.97457 1.21944 0.83339 0.81537 0.85099 1.90750 1.75390 1.33401 1.48019 1.21050 0.95964 0.98849 0.93013 0.91047 0.92757 0.96875 0.92533 0.90720 0.88319 0.90991 0.82161 0.80862 0.80660 0.84506 0.92196 0.88094 0.88247 0.90049 0.85814 0.88838 0.86106 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 8.94 71.98 0.64 -6.28 16 2 C 0.26 14.79 2.63 44.25 0.12 14.91 16 3 H 0.00 0.08 6.92 -2.39 -0.02 0.06 16 4 C -0.54 -30.64 8.37 25.60 0.21 -30.42 16 5 H 0.07 3.55 7.53 -2.91 -0.02 3.53 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -55.27 11.32 21.45 0.24 -55.02 16 8 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.59 -28.09 2.75 -830.22 -2.29 -30.38 16 13 C 0.07 2.41 7.92 127.77 1.01 3.42 16 14 C 0.53 26.39 7.52 86.78 0.65 27.04 16 15 O -0.61 -37.31 15.88 -3.88 -0.06 -37.37 16 16 C -0.15 -5.67 5.57 -20.09 -0.11 -5.78 16 17 C -0.10 -2.76 7.61 22.53 0.17 -2.59 16 18 C -0.12 -1.94 10.03 22.23 0.22 -1.72 16 19 C -0.06 -0.96 9.69 22.33 0.22 -0.74 16 20 C -0.12 -2.85 5.46 -19.90 -0.11 -2.96 16 21 C 0.17 3.14 6.06 85.63 0.52 3.65 16 22 N -0.61 -10.89 2.92 -822.31 -2.40 -13.29 16 23 C 0.10 0.61 7.35 86.83 0.64 1.25 16 24 C -0.12 -0.73 7.18 31.65 0.23 -0.50 16 25 C -0.15 -2.20 6.86 30.59 0.21 -1.99 16 26 C 0.49 12.63 8.02 87.90 0.71 13.33 16 27 O -0.59 -23.36 17.59 -3.04 -0.05 -23.41 16 28 C -0.07 -2.48 9.24 22.53 0.21 -2.28 16 29 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 30 H 0.05 2.51 6.68 -2.39 -0.02 2.49 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.07 2.25 6.90 -2.39 -0.02 2.23 16 34 H 0.10 2.70 5.21 -2.39 -0.01 2.69 16 35 H 0.07 2.40 6.44 -2.39 -0.02 2.38 16 36 H 0.16 3.92 4.04 -2.91 -0.01 3.91 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.14 1.23 8.08 -2.38 -0.02 1.21 16 40 H 0.06 1.52 7.86 -2.39 -0.02 1.51 16 41 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.08 3.83 7.79 -2.91 -0.02 3.81 16 Total: -1.00 -93.61 380.02 4.44 -89.18 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.98 Total: 14.88 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.99 Total: 9.49 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.44 Total: -98.70 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.12 Total: -60.78 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -93.61 4.44 -89.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.706 kcal (2) G-P(sol) polarization free energy of solvation -93.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds