Wall clock time and date at job start Tue Mar 31 2020 15:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47067 * 119.99850 * 2 1 3 5 5 H 1.08001 * 119.99590 * 120.00043 * 4 2 1 6 6 C 1.37871 * 120.00267 * 300.00538 * 4 2 1 7 7 N 1.31516 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47511 * 119.99693 * 8 6 4 11 11 H 1.48507 * 109.47283 * 239.99737 * 8 6 4 12 12 N 1.46496 * 109.47195 * 240.00518 * 2 1 3 13 13 C 1.46504 * 119.99884 * 299.99538 * 12 2 1 14 14 C 1.34777 * 120.00258 * 120.00192 * 12 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47161 * 59.99772 * 16 14 12 18 18 C 1.52997 * 109.47103 * 299.99738 * 16 14 12 19 19 N 1.46500 * 109.46949 * 179.97438 * 16 14 12 20 20 C 1.34775 * 120.00366 * 205.00138 * 19 16 14 21 21 O 1.21700 * 119.99562 * 359.97438 * 20 19 16 22 22 C 1.46424 * 120.00219 * 179.97438 * 20 19 16 23 23 C 1.34806 * 119.99966 * 179.97438 * 22 20 19 24 24 C 1.47206 * 120.00411 * 179.97438 * 23 22 20 25 25 C 1.39840 * 120.16438 * 359.72550 * 24 23 22 26 26 C 1.37896 * 119.82465 * 179.72280 * 25 24 23 27 27 C 1.38406 * 120.17070 * 0.57448 * 26 25 24 28 28 C 1.38406 * 120.34291 * 359.70011 * 27 26 25 29 29 C 1.37897 * 120.17087 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47144 * 299.99884 * 1 2 3 31 31 H 1.09006 * 109.47016 * 59.99587 * 1 2 3 32 32 H 1.08995 * 109.46867 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00152 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47441 * 270.00307 * 13 12 2 35 35 H 1.09005 * 109.47121 * 30.00515 * 13 12 2 36 36 H 1.08997 * 109.47160 * 150.00168 * 13 12 2 37 37 H 1.09002 * 109.46777 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.47140 * 300.00046 * 18 16 14 39 39 H 1.08992 * 109.47280 * 59.99899 * 18 16 14 40 40 H 0.97001 * 119.99882 * 24.99945 * 19 16 14 41 41 H 1.08001 * 120.00199 * 0.02562 * 22 20 19 42 42 H 1.08006 * 120.00219 * 0.02562 * 23 22 20 43 43 H 1.07992 * 120.08977 * 359.97438 * 25 24 23 44 44 H 1.07992 * 119.91815 * 180.29356 * 26 25 24 45 45 H 1.07998 * 119.82995 * 179.71620 * 27 26 25 46 46 H 1.07995 * 119.91494 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.08673 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0859 1.1258 -1.8916 16 6 3.2960 -0.7461 -3.3135 17 1 2.4485 -1.0890 -3.9070 18 6 4.1462 -1.9478 -2.8967 19 7 4.1094 0.1750 -4.1113 20 6 4.2474 -0.0234 -5.4372 21 8 3.6967 -0.9679 -5.9717 22 6 5.0599 0.8975 -6.2346 23 6 5.1983 0.6988 -7.5607 24 6 6.0146 1.6249 -8.3626 25 6 6.6434 2.7152 -7.7532 26 6 7.4111 3.5751 -8.5100 27 6 7.5505 3.3679 -9.8714 28 6 6.9266 2.2943 -10.4828 29 6 6.1610 1.4218 -9.7383 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.4158 -2.7376 -0.9718 35 1 0.6904 -2.3002 -0.9848 36 1 1.6239 -2.2851 -2.5002 37 1 4.5102 -2.4614 -3.7865 38 1 4.9938 -1.6049 -2.3033 39 1 3.5408 -2.6329 -2.3033 40 1 4.5486 0.9276 -3.6852 41 1 5.5489 1.7355 -5.7602 42 1 4.7096 -0.1394 -8.0351 43 1 6.5313 2.8811 -6.6920 44 1 7.9012 4.4148 -8.0402 45 1 8.1493 4.0474 -10.4596 46 1 7.0404 2.1390 -11.5454 47 1 5.6751 0.5843 -10.2167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:26 Heat of formation + Delta-G solvation = -24.299145 kcal Electronic energy + Delta-G solvation = -27118.190570 eV Core-core repulsion = 23266.565108 eV Total energy + Delta-G solvation = -3851.625462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.21384 -39.51660 -38.79424 -35.60845 -34.88882 -34.22612 -33.00926 -31.38445 -31.08103 -29.74041 -28.75906 -26.44520 -25.29451 -24.94660 -23.76293 -22.93081 -21.62517 -20.52331 -19.76957 -18.55154 -17.85341 -17.07238 -16.50776 -16.36148 -15.78009 -15.49631 -15.22319 -15.03688 -14.76718 -14.55827 -14.28700 -13.86537 -13.72288 -13.60980 -13.35510 -13.25758 -12.98149 -12.61842 -12.37129 -12.11630 -12.02976 -11.64558 -11.60303 -11.43180 -11.28144 -11.24268 -11.10402 -10.79371 -10.75319 -10.62385 -10.28267 -10.21371 -9.98041 -9.33010 -9.27016 -9.19361 -8.90886 -8.53777 -8.47097 -7.68884 -6.11297 -4.19439 0.26993 1.04394 1.76215 3.08050 3.16540 3.23340 3.26621 3.31860 3.34928 3.59875 3.92456 4.36149 4.39182 4.43545 4.59237 4.71031 4.87498 4.95783 5.01889 5.05660 5.16020 5.20352 5.27713 5.31113 5.56158 5.60496 5.63095 5.78541 5.80758 5.87567 5.96813 6.00538 6.13226 6.15987 6.17795 6.33931 6.35360 6.44803 6.58873 6.72671 6.77685 7.00401 7.33457 7.44745 7.58685 7.66847 7.95863 8.13237 8.22810 8.43432 8.74769 8.92034 9.47145 10.94064 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.002010 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.577182 B =13925.207054 C =14353.213839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.584 5.584 13 C 0.080 3.920 14 C 0.501 3.499 15 O -0.551 6.551 16 C 0.124 3.876 17 H 0.108 0.892 18 C -0.169 4.169 19 N -0.702 5.702 20 C 0.548 3.452 21 O -0.551 6.551 22 C -0.200 4.200 23 C -0.028 4.028 24 C -0.072 4.072 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.124 4.124 29 C -0.097 4.097 30 H 0.095 0.905 31 H 0.012 0.988 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.411 0.589 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 0.223 -21.822 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.315 5.315 13 C -0.064 4.064 14 C 0.286 3.714 15 O -0.430 6.430 16 C 0.016 3.984 17 H 0.126 0.874 18 C -0.227 4.227 19 N -0.354 5.354 20 C 0.337 3.663 21 O -0.431 6.431 22 C -0.220 4.220 23 C -0.048 4.048 24 C -0.072 4.072 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.142 4.142 29 C -0.115 4.115 30 H 0.113 0.887 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.248 0.752 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.932 0.279 -21.877 24.027 hybrid contribution 0.474 -0.108 1.191 1.286 sum 10.406 0.171 -20.686 23.157 Atomic orbital electron populations 1.22106 0.98096 0.99491 1.00954 1.18997 0.90962 0.94528 0.79773 0.91816 1.21331 1.31825 1.13002 0.90168 0.92149 1.24902 0.94950 0.94990 0.99021 1.69886 1.36371 1.22586 1.23708 0.86428 0.78606 0.79566 0.82707 1.19800 1.20930 1.20931 1.48170 1.48293 1.11732 1.23290 1.21802 1.01806 0.83122 0.99670 1.20306 0.79623 0.87095 0.84329 1.90636 1.58765 1.16916 1.76730 1.20807 0.95455 0.90213 0.91951 0.87399 1.22344 1.00823 0.97133 1.02385 1.45673 1.51159 1.30964 1.07573 1.18265 0.81058 0.85129 0.81815 1.90792 1.48864 1.31822 1.71664 1.22953 1.02721 1.01249 0.95123 1.22340 0.92901 0.96272 0.93301 1.19076 0.98685 0.95760 0.93660 1.21504 0.96257 0.93941 1.00330 1.21139 0.99043 0.99590 0.94183 1.21323 0.99165 0.97628 0.94981 1.21119 0.97810 0.95197 1.00061 1.21398 0.98033 0.99237 0.92877 0.88697 0.96921 0.94977 0.92704 0.92562 0.90617 0.92497 0.91498 0.91883 0.89642 0.75226 0.85166 0.84553 0.85281 0.85653 0.85937 0.85743 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 2 C 0.26 6.42 2.64 -69.08 -0.18 6.24 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.52 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.58 -12.07 2.75 -175.26 -0.48 -12.55 16 13 C 0.08 1.30 8.04 59.85 0.48 1.78 16 14 C 0.50 10.02 7.14 -10.98 -0.08 9.95 16 15 O -0.55 -12.81 15.16 5.56 0.08 -12.73 16 16 C 0.12 1.97 2.18 -69.08 -0.15 1.82 16 17 H 0.11 1.70 6.83 -51.93 -0.35 1.35 16 18 C -0.17 -2.34 9.12 37.16 0.34 -2.00 16 19 N -0.70 -10.27 4.95 -56.32 -0.28 -10.55 16 20 C 0.55 7.79 7.71 -12.97 -0.10 7.69 16 21 O -0.55 -9.27 15.89 5.19 0.08 -9.19 16 22 C -0.20 -2.20 9.41 -37.51 -0.35 -2.55 16 23 C -0.03 -0.29 9.46 -37.16 -0.35 -0.64 16 24 C -0.07 -0.66 5.87 -105.06 -0.62 -1.27 16 25 C -0.10 -0.86 9.41 -39.11 -0.37 -1.23 16 26 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 27 C -0.11 -0.77 10.04 -39.46 -0.40 -1.16 16 28 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 29 C -0.10 -0.77 9.80 -39.11 -0.38 -1.15 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.06 0.87 6.95 -51.93 -0.36 0.51 16 35 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 36 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.12 4.53 -51.93 -0.24 0.88 16 40 H 0.41 5.77 7.77 -40.82 -0.32 5.45 16 41 H 0.13 1.15 6.07 -52.49 -0.32 0.83 16 42 H 0.14 1.41 7.52 -52.48 -0.39 1.01 16 43 H 0.13 0.94 6.17 -52.49 -0.32 0.61 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -32.26 384.96 -8.66 -40.91 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.47 Total: 7.45 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.00 Total: -0.76 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.13 Total: -47.21 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.26 -8.66 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.614 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds