Wall clock time and date at job start Tue Mar 31 2020 15:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47067 * 119.99850 * 2 1 3 5 5 H 1.08001 * 119.99590 * 120.00043 * 4 2 1 6 6 C 1.37871 * 120.00267 * 300.00538 * 4 2 1 7 7 N 1.31516 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47511 * 119.99693 * 8 6 4 11 11 H 1.48507 * 109.47283 * 239.99737 * 8 6 4 12 12 N 1.46496 * 109.47195 * 240.00518 * 2 1 3 13 13 C 1.46504 * 119.99884 * 299.99538 * 12 2 1 14 14 C 1.34777 * 120.00258 * 120.00192 * 12 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47161 * 59.99772 * 16 14 12 18 18 C 1.52997 * 109.47103 * 299.99738 * 16 14 12 19 19 N 1.46500 * 109.46949 * 179.97438 * 16 14 12 20 20 C 1.34775 * 120.00366 * 205.00138 * 19 16 14 21 21 O 1.21700 * 119.99562 * 359.97438 * 20 19 16 22 22 C 1.46424 * 120.00219 * 179.97438 * 20 19 16 23 23 C 1.34806 * 119.99966 * 179.97438 * 22 20 19 24 24 C 1.47206 * 120.00411 * 179.97438 * 23 22 20 25 25 C 1.39840 * 120.16438 * 359.72550 * 24 23 22 26 26 C 1.37896 * 119.82465 * 179.72280 * 25 24 23 27 27 C 1.38406 * 120.17070 * 0.57448 * 26 25 24 28 28 C 1.38406 * 120.34291 * 359.70011 * 27 26 25 29 29 C 1.37897 * 120.17087 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47144 * 299.99884 * 1 2 3 31 31 H 1.09006 * 109.47016 * 59.99587 * 1 2 3 32 32 H 1.08995 * 109.46867 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00152 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47441 * 270.00307 * 13 12 2 35 35 H 1.09005 * 109.47121 * 30.00515 * 13 12 2 36 36 H 1.08997 * 109.47160 * 150.00168 * 13 12 2 37 37 H 1.09002 * 109.46777 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.47140 * 300.00046 * 18 16 14 39 39 H 1.08992 * 109.47280 * 59.99899 * 18 16 14 40 40 H 0.97001 * 119.99882 * 24.99945 * 19 16 14 41 41 H 1.08001 * 120.00199 * 0.02562 * 22 20 19 42 42 H 1.08006 * 120.00219 * 0.02562 * 23 22 20 43 43 H 1.07992 * 120.08977 * 359.97438 * 25 24 23 44 44 H 1.07992 * 119.91815 * 180.29356 * 26 25 24 45 45 H 1.07998 * 119.82995 * 179.71620 * 27 26 25 46 46 H 1.07995 * 119.91494 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.08673 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0859 1.1258 -1.8916 16 6 3.2960 -0.7461 -3.3135 17 1 2.4485 -1.0890 -3.9070 18 6 4.1462 -1.9478 -2.8967 19 7 4.1094 0.1750 -4.1113 20 6 4.2474 -0.0234 -5.4372 21 8 3.6967 -0.9679 -5.9717 22 6 5.0599 0.8975 -6.2346 23 6 5.1983 0.6988 -7.5607 24 6 6.0146 1.6249 -8.3626 25 6 6.6434 2.7152 -7.7532 26 6 7.4111 3.5751 -8.5100 27 6 7.5505 3.3679 -9.8714 28 6 6.9266 2.2943 -10.4828 29 6 6.1610 1.4218 -9.7383 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.4158 -2.7376 -0.9718 35 1 0.6904 -2.3002 -0.9848 36 1 1.6239 -2.2851 -2.5002 37 1 4.5102 -2.4614 -3.7865 38 1 4.9938 -1.6049 -2.3033 39 1 3.5408 -2.6329 -2.3033 40 1 4.5486 0.9276 -3.6852 41 1 5.5489 1.7355 -5.7602 42 1 4.7096 -0.1394 -8.0351 43 1 6.5313 2.8811 -6.6920 44 1 7.9012 4.4148 -8.0402 45 1 8.1493 4.0474 -10.4596 46 1 7.0404 2.1390 -11.5454 47 1 5.6751 0.5843 -10.2167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:25 Heat of formation + Delta-G solvation = -43.393157 kcal Electronic energy + Delta-G solvation = -27119.018548 eV Core-core repulsion = 23266.565108 eV Total energy + Delta-G solvation = -3852.453440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53740 -40.42839 -39.87540 -37.31086 -36.19743 -35.03925 -34.84811 -32.50491 -31.90236 -30.89520 -30.04983 -27.87838 -27.30997 -26.01167 -24.88296 -23.57669 -22.84876 -21.80748 -20.84212 -19.97857 -18.86546 -18.46203 -17.80339 -17.79488 -17.05042 -16.85161 -16.35028 -16.21553 -15.98555 -15.77060 -15.48264 -15.02545 -14.79479 -14.59738 -14.37436 -14.25433 -14.23613 -13.90163 -13.59033 -13.49383 -13.29306 -13.11805 -12.99003 -12.82552 -12.79540 -12.63649 -12.36557 -12.16825 -12.16072 -12.10379 -11.83901 -11.35844 -11.20079 -11.09902 -10.74975 -10.51598 -10.23707 -9.88497 -9.39301 -9.23470 -8.14612 -6.30710 -0.46136 0.49054 1.00692 1.41562 1.43284 1.54052 1.63235 1.87688 2.24846 2.37734 2.52910 2.97003 3.13817 3.44538 3.60976 3.82629 3.97565 4.06738 4.07324 4.15734 4.23006 4.35316 4.37173 4.53552 4.56203 4.61476 4.65036 4.76045 4.79578 4.87809 4.96565 4.98456 5.03633 5.04995 5.16926 5.18858 5.21633 5.30721 5.45857 5.54968 5.58569 5.59140 5.65863 5.67530 6.00519 6.04853 6.14944 6.46048 6.71518 6.76598 7.11598 7.21816 7.42479 8.90017 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.002010 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.577182 B =13925.207054 C =14353.213839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.591 5.591 13 C 0.074 3.926 14 C 0.495 3.505 15 O -0.592 6.592 16 C 0.136 3.864 17 H 0.114 0.886 18 C -0.160 4.160 19 N -0.704 5.704 20 C 0.550 3.450 21 O -0.581 6.581 22 C -0.219 4.219 23 C -0.009 4.009 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.112 4.112 28 C -0.130 4.130 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.413 0.587 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.527 -0.897 -23.332 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.320 5.320 13 C -0.068 4.068 14 C 0.282 3.718 15 O -0.474 6.474 16 C 0.027 3.973 17 H 0.131 0.869 18 C -0.218 4.218 19 N -0.356 5.356 20 C 0.341 3.659 21 O -0.464 6.464 22 C -0.239 4.239 23 C -0.029 4.029 24 C -0.096 4.096 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.130 4.130 28 C -0.148 4.148 29 C -0.122 4.122 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.167 0.833 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.172 -0.870 -23.407 25.951 hybrid contribution 0.135 0.323 1.515 1.555 sum 11.307 -0.548 -21.892 24.646 Atomic orbital electron populations 1.21908 0.97175 1.00284 1.00001 1.18594 0.91612 0.92358 0.81459 0.96944 1.21579 1.31764 1.13019 0.90884 0.91833 1.25733 0.95139 0.95662 1.02042 1.70026 1.37386 1.23903 1.24349 0.85404 0.78154 0.78503 0.78920 1.18779 1.21264 1.20205 1.48131 1.48323 1.13395 1.22174 1.22072 1.02076 0.80537 1.02069 1.21036 0.78829 0.86740 0.85174 1.90610 1.60080 1.18878 1.77822 1.20698 0.96204 0.90465 0.89897 0.86871 1.22304 1.00388 0.96257 1.02887 1.45717 1.51029 1.30978 1.07851 1.18681 0.80705 0.85060 0.81460 1.90766 1.50348 1.33233 1.72011 1.22865 1.03934 1.01898 0.95212 1.22432 0.91616 0.95748 0.93058 1.19129 0.99820 0.96344 0.94282 1.21703 0.96398 0.94010 1.00928 1.21432 0.98926 0.99942 0.94672 1.21705 0.98566 0.97667 0.95012 1.21451 0.97212 0.94846 1.01257 1.21656 0.98086 0.99869 0.92551 0.91260 0.96212 0.93169 0.92681 0.91308 0.90672 0.89191 0.90426 0.92394 0.88509 0.75012 0.83342 0.84997 0.84746 0.83937 0.83577 0.83458 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.45 8.95 71.98 0.64 -5.80 16 2 C 0.26 13.35 2.64 44.25 0.12 13.47 16 3 H 0.01 0.77 6.90 -2.38 -0.02 0.75 16 4 C -0.53 -28.33 8.37 25.60 0.21 -28.11 16 5 H 0.06 3.26 7.65 -2.91 -0.02 3.23 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.59 -24.35 2.75 -826.78 -2.28 -26.62 16 13 C 0.07 2.29 8.04 127.77 1.03 3.31 16 14 C 0.49 19.98 7.14 87.66 0.63 20.61 16 15 O -0.59 -28.54 15.16 -3.03 -0.05 -28.59 16 16 C 0.14 4.21 2.18 44.25 0.10 4.31 16 17 H 0.11 3.43 6.83 -2.39 -0.02 3.41 16 18 C -0.16 -4.19 9.12 71.98 0.66 -3.53 16 19 N -0.70 -20.53 4.95 -450.33 -2.23 -22.76 16 20 C 0.55 15.47 7.71 86.37 0.67 16.13 16 21 O -0.58 -19.29 15.89 -4.35 -0.07 -19.35 16 22 C -0.22 -4.74 9.41 23.61 0.22 -4.51 16 23 C -0.01 -0.17 9.46 23.84 0.23 0.05 16 24 C -0.10 -1.66 5.87 -20.15 -0.12 -1.78 16 25 C -0.11 -1.77 9.41 22.58 0.21 -1.56 16 26 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 27 C -0.11 -1.24 10.04 22.35 0.22 -1.02 16 28 C -0.13 -1.50 10.03 22.23 0.22 -1.27 16 29 C -0.10 -1.48 9.80 22.57 0.22 -1.26 16 30 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 31 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 2.15 6.66 -2.39 -0.02 2.14 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.07 1.96 6.95 -2.39 -0.02 1.94 16 35 H 0.07 2.32 6.43 -2.38 -0.02 2.31 16 36 H 0.09 2.17 6.01 -2.39 -0.01 2.15 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 2.29 4.53 -2.39 -0.01 2.28 16 40 H 0.41 11.78 7.77 -92.71 -0.72 11.06 16 41 H 0.15 2.56 6.07 -2.91 -0.02 2.54 16 42 H 0.13 2.69 7.52 -2.91 -0.02 2.67 16 43 H 0.13 1.85 6.17 -2.91 -0.02 1.83 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 46 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 47 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -71.14 384.96 3.86 -67.29 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.28 Total: 28.82 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.93 Total: 8.75 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.26 Total: -101.39 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.11 Total: -47.94 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.14 3.86 -67.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.892 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds