Wall clock time and date at job start Tue Mar 31 2020 17:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47374 * 2 1 4 4 C 1.46500 * 119.99865 * 270.00414 * 3 2 1 5 5 C 1.50698 * 109.47128 * 269.99823 * 4 3 2 6 6 H 1.08009 * 120.00146 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00500 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00309 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47227 * 60.00051 * 9 7 5 11 11 H 1.48508 * 109.46978 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47190 * 299.99639 * 9 7 5 13 13 C 1.34777 * 119.99758 * 90.00190 * 3 2 1 14 14 O 1.21279 * 119.99633 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00115 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.35912 * 117.00151 * 180.02562 * 19 18 17 21 21 C 1.38853 * 119.97820 * 359.72084 * 20 19 18 22 22 C 1.38251 * 120.24919 * 179.72825 * 21 20 19 23 23 C 1.37994 * 120.20793 * 0.54878 * 22 21 20 24 24 C 1.39626 * 119.96327 * 359.72908 * 23 22 21 25 25 C 1.43191 * 120.12521 * 179.97438 * 24 23 22 26 26 N 9.59156 * 134.26484 * 235.10482 * 16 1 2 27 27 C 1.38437 * 119.97939 * 180.02562 * 20 19 18 28 28 H 1.09003 * 109.46739 * 299.99775 * 1 2 3 29 29 H 1.09000 * 109.47313 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46739 * 240.00225 * 2 1 3 32 32 H 1.09001 * 109.46849 * 120.00519 * 2 1 3 33 33 H 1.08999 * 109.47460 * 29.99619 * 4 3 2 34 34 H 1.08995 * 109.46789 * 150.00011 * 4 3 2 35 35 H 0.96996 * 120.00094 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47060 * 60.00000 * 15 13 3 37 37 H 1.09001 * 109.46927 * 300.00196 * 15 13 3 38 38 H 1.09002 * 109.47153 * 60.00002 * 16 15 13 39 39 H 1.09001 * 109.46832 * 300.00193 * 16 15 13 40 40 H 1.09002 * 109.47103 * 59.99753 * 17 16 15 41 41 H 1.08998 * 109.46862 * 300.00565 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 44 44 H 1.08008 * 119.87918 * 0.02562 * 21 20 19 45 45 H 1.08001 * 119.89725 * 180.28083 * 22 21 20 46 46 H 1.08004 * 120.02029 * 179.74887 * 23 22 21 47 47 H 1.07998 * 120.10864 * 359.97179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7039 6 1 4.3427 1.2301 -1.0963 7 6 4.1494 2.3903 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9137 2.0974 -3.4164 10 1 6.1416 0.6408 -3.5944 11 1 6.1615 2.7983 -4.7020 12 1 6.8410 2.6207 -2.3812 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9914 1.3062 2.4723 16 6 2.3223 2.2437 3.6353 17 6 2.0674 1.5225 4.9602 18 6 2.3990 2.4597 6.1232 19 8 2.1615 1.7859 7.3607 20 6 2.4079 2.4838 8.5006 21 6 2.8748 3.7895 8.4274 22 6 3.1220 4.5065 9.5833 23 6 2.9172 3.9254 10.8181 24 6 2.4533 2.6111 10.9019 25 6 2.2400 2.0045 12.1813 26 7 2.0675 1.5244 13.1964 27 6 2.1994 1.8904 9.7338 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1409 -1.1383 35 1 3.6756 3.5175 -4.4432 36 1 2.6212 0.4184 2.5302 37 1 0.9432 1.0125 2.5298 38 1 1.6922 3.1312 3.5772 39 1 3.3704 2.5378 3.5778 40 1 2.6979 0.6351 5.0181 41 1 1.0196 1.2279 5.0178 42 1 1.7689 3.3473 6.0655 43 1 3.4470 2.7538 6.0653 44 1 3.0409 4.2483 7.4639 45 1 3.4808 5.5232 9.5198 46 1 3.1151 4.4870 11.7191 47 1 1.8405 0.8735 9.7920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111661810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:48 Heat of formation + Delta-G solvation = -37.237252 kcal Electronic energy + Delta-G solvation = -26112.694305 eV Core-core repulsion = 22260.507805 eV Total energy + Delta-G solvation = -3852.186500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66893 -39.17709 -38.40243 -36.65110 -35.47988 -34.78924 -32.81255 -31.89218 -30.98860 -30.11331 -29.52178 -27.13500 -25.27169 -23.93460 -23.02860 -22.94332 -22.28394 -21.08018 -19.71459 -18.24879 -17.06622 -16.72500 -16.64997 -16.55992 -16.42473 -16.11710 -15.52906 -15.24055 -14.62239 -14.46721 -14.33974 -14.08070 -13.92354 -13.64771 -13.39120 -13.21819 -13.10311 -12.88120 -12.51359 -12.38378 -12.26186 -12.11442 -11.90224 -11.72021 -11.65033 -11.46572 -11.22495 -11.14289 -11.03689 -10.92724 -10.77518 -10.58347 -10.48846 -10.13884 -9.66003 -9.54318 -8.89088 -8.75049 -8.44363 -7.66527 -6.05370 -4.10243 0.23977 0.87011 2.15952 2.48950 2.71416 3.30335 3.34892 3.36422 3.38315 3.45024 3.46726 3.94642 4.24643 4.43180 4.50253 4.54513 4.63730 4.64884 4.76720 4.88330 4.96786 5.06883 5.17064 5.26891 5.29006 5.31297 5.34763 5.52946 5.57579 5.63543 5.65938 5.71663 5.74817 5.79017 5.82710 5.84822 6.04805 6.07072 6.19135 6.22725 6.32853 6.48023 6.94026 7.01581 7.06976 7.43961 7.54933 7.91099 8.22925 8.43642 8.89214 9.10154 9.54938 11.02587 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.070929 B =16520.184226 C =17316.014575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.503 3.497 14 O -0.545 6.545 15 C -0.139 4.139 16 C -0.101 4.101 17 C -0.118 4.118 18 C 0.057 3.943 19 O -0.312 6.312 20 C 0.136 3.864 21 C -0.179 4.179 22 C -0.078 4.078 23 C -0.112 4.112 24 C 0.008 3.992 25 C 0.257 3.743 26 N -0.414 5.414 27 C -0.108 4.108 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -2.306 23.243 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.423 6.423 15 C -0.179 4.179 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.018 4.018 19 O -0.225 6.225 20 C 0.090 3.910 21 C -0.199 4.199 22 C -0.096 4.096 23 C -0.133 4.133 24 C 0.005 3.995 25 C -0.058 4.058 26 N -0.089 5.089 27 C -0.129 4.129 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.488 -2.540 24.570 25.105 hybrid contribution 1.091 0.145 -0.990 1.481 sum -3.397 -2.395 23.580 23.943 Atomic orbital electron populations 1.22221 0.96864 1.01368 1.02286 1.21406 0.93450 0.84272 1.02645 1.48273 1.63648 1.13232 1.07860 1.19243 0.96167 0.93617 0.78279 1.21408 0.96985 1.31918 1.06291 0.92559 1.24935 0.97830 0.94938 0.96393 1.69923 1.35705 1.33378 1.14372 0.86566 0.84819 0.78237 0.77825 1.20269 1.21178 1.20206 1.20348 0.78440 0.86966 0.85258 1.90660 1.46042 1.18247 1.87360 1.21686 1.03128 0.99748 0.93363 1.21213 1.03420 0.98281 0.90942 1.21583 1.03122 0.98754 0.92069 1.22995 1.01330 0.96345 0.81082 1.86087 1.82246 1.41516 1.12656 1.18737 0.95052 0.90577 0.86640 1.21635 1.03524 0.94165 1.00567 1.20924 0.97535 1.00091 0.91051 1.21082 1.00219 0.93162 0.98799 1.15631 1.04108 0.94003 0.85789 1.25604 0.93834 0.93579 0.92823 1.81280 1.08370 1.08033 1.11175 1.20342 1.03164 1.00971 0.88416 0.93049 0.92111 0.92222 0.90090 0.91660 0.95136 0.93969 0.92683 0.89446 0.89546 0.90907 0.90785 0.90669 0.90715 0.91449 0.91417 0.84348 0.84474 0.84847 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.16 2.46 -175.06 -0.43 -12.59 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 9.84 7.67 -10.98 -0.08 9.75 16 14 O -0.54 -13.10 15.56 5.56 0.09 -13.01 16 15 C -0.14 -1.80 4.25 -27.88 -0.12 -1.92 16 16 C -0.10 -1.15 4.50 -26.74 -0.12 -1.27 16 17 C -0.12 -0.99 5.58 -26.74 -0.15 -1.14 16 18 C 0.06 0.44 4.74 37.16 0.18 0.62 16 19 O -0.31 -2.71 10.13 -19.46 -0.20 -2.91 16 20 C 0.14 1.05 6.68 -39.28 -0.26 0.78 16 21 C -0.18 -1.13 9.03 -39.35 -0.36 -1.49 16 22 C -0.08 -0.39 10.03 -39.67 -0.40 -0.79 16 23 C -0.11 -0.60 9.75 -39.15 -0.38 -0.98 16 24 C 0.01 0.06 5.73 -106.96 -0.61 -0.56 16 25 C 0.26 2.19 15.33 -22.47 -0.34 1.85 16 26 N -0.41 -4.49 18.54 41.84 0.78 -3.72 16 27 C -0.11 -0.77 9.69 -39.01 -0.38 -1.15 16 28 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 37 H 0.09 0.94 7.18 -51.93 -0.37 0.57 16 38 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16 43 H 0.07 0.48 7.65 -51.93 -0.40 0.08 16 44 H 0.14 0.73 6.28 -52.48 -0.33 0.40 16 45 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 46 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 47 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -34.10 402.46 -8.27 -42.37 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -7.16 Total: -3.56 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.12 Total: -3.63 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.08 Total: -41.92 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.10 -8.27 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111661810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.131 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds