Wall clock time and date at job start Tue Mar 31 2020 17:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47374 * 2 1 4 4 C 1.46500 * 119.99865 * 270.00414 * 3 2 1 5 5 C 1.50698 * 109.47128 * 269.99823 * 4 3 2 6 6 H 1.08009 * 120.00146 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00500 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00309 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47227 * 60.00051 * 9 7 5 11 11 H 1.48508 * 109.46978 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47190 * 299.99639 * 9 7 5 13 13 C 1.34777 * 119.99758 * 90.00190 * 3 2 1 14 14 O 1.21279 * 119.99633 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00115 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.35912 * 117.00151 * 180.02562 * 19 18 17 21 21 C 1.38853 * 119.97820 * 359.72084 * 20 19 18 22 22 C 1.38251 * 120.24919 * 179.72825 * 21 20 19 23 23 C 1.37994 * 120.20793 * 0.54878 * 22 21 20 24 24 C 1.39626 * 119.96327 * 359.72908 * 23 22 21 25 25 C 1.43191 * 120.12521 * 179.97438 * 24 23 22 26 26 N 9.59156 * 134.26484 * 235.10482 * 16 1 2 27 27 C 1.38437 * 119.97939 * 180.02562 * 20 19 18 28 28 H 1.09003 * 109.46739 * 299.99775 * 1 2 3 29 29 H 1.09000 * 109.47313 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46739 * 240.00225 * 2 1 3 32 32 H 1.09001 * 109.46849 * 120.00519 * 2 1 3 33 33 H 1.08999 * 109.47460 * 29.99619 * 4 3 2 34 34 H 1.08995 * 109.46789 * 150.00011 * 4 3 2 35 35 H 0.96996 * 120.00094 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47060 * 60.00000 * 15 13 3 37 37 H 1.09001 * 109.46927 * 300.00196 * 15 13 3 38 38 H 1.09002 * 109.47153 * 60.00002 * 16 15 13 39 39 H 1.09001 * 109.46832 * 300.00193 * 16 15 13 40 40 H 1.09002 * 109.47103 * 59.99753 * 17 16 15 41 41 H 1.08998 * 109.46862 * 300.00565 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 44 44 H 1.08008 * 119.87918 * 0.02562 * 21 20 19 45 45 H 1.08001 * 119.89725 * 180.28083 * 22 21 20 46 46 H 1.08004 * 120.02029 * 179.74887 * 23 22 21 47 47 H 1.07998 * 120.10864 * 359.97179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7039 6 1 4.3427 1.2301 -1.0963 7 6 4.1494 2.3903 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9137 2.0974 -3.4164 10 1 6.1416 0.6408 -3.5944 11 1 6.1615 2.7983 -4.7020 12 1 6.8410 2.6207 -2.3812 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9914 1.3062 2.4723 16 6 2.3223 2.2437 3.6353 17 6 2.0674 1.5225 4.9602 18 6 2.3990 2.4597 6.1232 19 8 2.1615 1.7859 7.3607 20 6 2.4079 2.4838 8.5006 21 6 2.8748 3.7895 8.4274 22 6 3.1220 4.5065 9.5833 23 6 2.9172 3.9254 10.8181 24 6 2.4533 2.6111 10.9019 25 6 2.2400 2.0045 12.1813 26 7 2.0675 1.5244 13.1964 27 6 2.1994 1.8904 9.7338 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1409 -1.1383 35 1 3.6756 3.5175 -4.4432 36 1 2.6212 0.4184 2.5302 37 1 0.9432 1.0125 2.5298 38 1 1.6922 3.1312 3.5772 39 1 3.3704 2.5378 3.5778 40 1 2.6979 0.6351 5.0181 41 1 1.0196 1.2279 5.0178 42 1 1.7689 3.3473 6.0655 43 1 3.4470 2.7538 6.0653 44 1 3.0409 4.2483 7.4639 45 1 3.4808 5.5232 9.5198 46 1 3.1151 4.4870 11.7191 47 1 1.8405 0.8735 9.7920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111661810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:47 Heat of formation + Delta-G solvation = -56.402187 kcal Electronic energy + Delta-G solvation = -26113.525359 eV Core-core repulsion = 22260.507805 eV Total energy + Delta-G solvation = -3853.017554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.19350 -40.69066 -38.99339 -37.34343 -36.97392 -35.79489 -34.85179 -32.39854 -31.83662 -31.42838 -30.37305 -28.83512 -26.22856 -25.02374 -24.37820 -23.65505 -23.32156 -21.95076 -20.29582 -19.70720 -18.60278 -17.82673 -17.51902 -17.36990 -17.24845 -17.01207 -16.90551 -16.46987 -16.09734 -15.34290 -15.10484 -14.97504 -14.75950 -14.61564 -14.46310 -14.29009 -14.24205 -13.81702 -13.68161 -13.46518 -13.27153 -13.19128 -13.03055 -12.83893 -12.70188 -12.65431 -12.54335 -12.45001 -12.19804 -12.13265 -11.93765 -11.75796 -11.72348 -11.67178 -11.38409 -10.63194 -10.50538 -10.03435 -9.38646 -9.25332 -8.21042 -6.36331 -0.27628 0.40951 1.37181 1.41254 1.48635 1.50548 1.89598 1.92711 2.10878 2.35400 2.53044 2.86310 2.88697 3.08046 3.76808 3.80066 3.90699 3.99862 4.07727 4.16180 4.18502 4.23413 4.31470 4.40465 4.46970 4.48086 4.52777 4.65705 4.72605 4.76446 4.85962 4.90129 5.00754 5.03785 5.06306 5.09447 5.18861 5.25559 5.33025 5.33162 5.39370 5.43255 5.46237 5.60285 5.63541 5.90058 6.08636 6.36225 6.41468 6.71938 6.87923 7.30321 7.56401 8.85512 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.070929 B =16520.184226 C =17316.014575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.491 3.509 14 O -0.602 6.602 15 C -0.125 4.125 16 C -0.095 4.095 17 C -0.106 4.106 18 C 0.056 3.944 19 O -0.324 6.324 20 C 0.117 3.883 21 C -0.180 4.180 22 C -0.075 4.075 23 C -0.103 4.103 24 C -0.002 4.002 25 C 0.281 3.719 26 N -0.460 5.460 27 C -0.112 4.112 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.018 0.982 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.153 0.847 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -3.498 24.566 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.280 3.720 14 O -0.484 6.484 15 C -0.164 4.164 16 C -0.133 4.133 17 C -0.144 4.144 18 C -0.019 4.019 19 O -0.238 6.238 20 C 0.072 3.928 21 C -0.199 4.199 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.006 4.006 25 C -0.034 4.034 26 N -0.136 5.136 27 C -0.134 4.134 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.036 0.964 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.166 0.834 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.002 -3.783 25.915 26.493 hybrid contribution 0.903 0.573 -1.422 1.779 sum -3.099 -3.210 24.493 24.896 Atomic orbital electron populations 1.22157 0.94692 1.03424 1.01665 1.21742 0.95221 0.81376 1.03923 1.48330 1.63902 1.15128 1.06365 1.18654 0.95120 0.91465 0.80772 1.21719 0.97990 1.32004 1.06588 0.92766 1.25876 1.02423 0.94490 0.96441 1.70052 1.37814 1.34179 1.14802 0.85471 0.79010 0.78998 0.77349 1.18486 1.20431 1.20219 1.21594 0.76837 0.86583 0.86942 1.90625 1.48456 1.20997 1.88313 1.21712 1.05545 0.99862 0.89315 1.21126 1.02075 0.97997 0.92145 1.21420 1.03982 0.98580 0.90396 1.22983 1.01783 0.96347 0.80786 1.86038 1.82696 1.42063 1.13008 1.18866 0.96274 0.91285 0.86383 1.21859 1.02751 0.93719 1.01597 1.21237 0.96679 1.01112 0.90293 1.21362 0.98666 0.92449 0.99894 1.15668 1.05381 0.94738 0.84779 1.25806 0.92448 0.92458 0.92648 1.81297 1.10222 1.09491 1.12606 1.20387 1.03242 1.01213 0.88510 0.91757 0.94688 0.88738 0.91475 0.87685 0.96411 0.98732 0.92462 0.86886 0.86420 0.92094 0.92553 0.89902 0.89583 0.90805 0.91047 0.83447 0.81841 0.82883 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.10 2.86 5.93 86.38 0.51 3.38 16 3 N -0.61 -24.87 2.46 -826.16 -2.03 -26.90 16 4 C 0.26 14.09 5.16 85.63 0.44 14.54 16 5 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 9 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.49 19.23 7.67 87.66 0.67 19.90 16 14 O -0.60 -30.11 15.56 -3.03 -0.05 -30.16 16 15 C -0.12 -2.92 4.25 29.85 0.13 -2.80 16 16 C -0.10 -2.03 4.50 30.59 0.14 -1.90 16 17 C -0.11 -1.52 5.58 30.59 0.17 -1.34 16 18 C 0.06 0.76 4.74 71.98 0.34 1.10 16 19 O -0.32 -5.12 10.13 -92.56 -0.94 -6.05 16 20 C 0.12 1.64 6.68 22.46 0.15 1.79 16 21 C -0.18 -1.90 9.03 22.42 0.20 -1.70 16 22 C -0.08 -0.56 10.03 22.22 0.22 -0.33 16 23 C -0.10 -0.87 9.75 22.55 0.22 -0.65 16 24 C 0.00 -0.03 5.73 -21.38 -0.12 -0.15 16 25 C 0.28 4.62 15.33 88.33 1.35 5.97 16 26 N -0.46 -9.98 18.54 19.00 0.35 -9.63 16 27 C -0.11 -1.49 9.69 22.64 0.22 -1.27 16 28 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.11 2.19 6.44 -2.39 -0.02 2.18 16 33 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 34 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.11 2.13 7.40 -2.39 -0.02 2.12 16 37 H 0.12 2.08 7.18 -2.39 -0.02 2.06 16 38 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 43 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 44 H 0.15 1.24 6.28 -2.91 -0.02 1.23 16 45 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 46 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.89 402.46 6.70 -72.19 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.96 Total: 6.61 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.09 Total: 3.28 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.39 Total: -92.48 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.99 Total: -36.22 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -78.89 6.70 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111661810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.791 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds