Wall clock time and date at job start Tue Mar 31 2020 17:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47060 * 2 1 4 4 C 1.36939 * 120.00236 * 272.13645 * 3 2 1 5 5 H 1.08005 * 119.99537 * 8.57062 * 4 3 2 6 6 C 1.38809 * 120.00323 * 188.56783 * 4 3 2 7 7 N 1.31622 * 119.99797 * 24.82933 * 6 4 3 8 8 Si 1.86797 * 120.00078 * 204.82953 * 6 4 3 9 9 H 1.48503 * 109.47031 * 60.00185 * 8 6 4 10 10 H 1.48501 * 109.46814 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47182 * 300.00021 * 8 6 4 12 12 C 1.46501 * 119.99739 * 92.13766 * 3 2 1 13 13 C 1.50693 * 109.47090 * 90.00127 * 12 3 2 14 14 O 1.21288 * 120.00008 * 359.97438 * 13 12 3 15 15 N 1.34776 * 120.00126 * 179.97438 * 13 12 3 16 16 C 1.46502 * 119.99871 * 359.97438 * 15 13 12 17 17 C 1.46507 * 120.00040 * 179.72437 * 15 13 12 18 18 H 1.08998 * 109.47315 * 0.27539 * 17 15 13 19 19 C 1.52995 * 109.46752 * 240.27174 * 17 15 13 20 20 C 1.50700 * 109.46810 * 120.27366 * 17 15 13 21 21 C 1.33997 * 124.91759 * 219.99613 * 20 17 15 22 22 C 1.46793 * 106.18312 * 179.97438 * 21 20 17 23 23 C 1.39404 * 134.36983 * 180.02562 * 22 21 20 24 24 C 1.36741 * 119.71387 * 179.97438 * 23 22 21 25 25 C 1.38746 * 120.41768 * 359.97438 * 24 23 22 26 26 C 1.37844 * 120.68539 * 0.02562 * 25 24 23 27 27 C 1.38940 * 119.82041 * 359.97438 * 26 25 24 28 28 O 1.34450 * 124.92557 * 39.70125 * 20 17 15 29 29 H 1.09001 * 109.46817 * 300.00103 * 1 2 3 30 30 H 1.08997 * 109.47103 * 59.99799 * 1 2 3 31 31 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46818 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47103 * 120.00201 * 2 1 3 34 34 H 0.96999 * 120.00165 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.46996 * 329.99875 * 12 3 2 36 36 H 1.08997 * 109.47115 * 209.99728 * 12 3 2 37 37 H 1.08999 * 109.47021 * 269.72658 * 16 15 13 38 38 H 1.08990 * 109.47059 * 29.72594 * 16 15 13 39 39 H 1.08997 * 109.46975 * 149.72846 * 16 15 13 40 40 H 1.09003 * 109.47703 * 299.99784 * 19 17 15 41 41 H 1.09003 * 109.47408 * 60.00742 * 19 17 15 42 42 H 1.09005 * 109.46862 * 179.97438 * 19 17 15 43 43 H 1.07994 * 126.90994 * 359.96847 * 21 20 17 44 44 H 1.07998 * 120.14272 * 359.97438 * 23 22 21 45 45 H 1.07995 * 119.78980 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.65534 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.08907 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2049 2.0416 -1.1851 5 1 1.8639 1.5989 -2.1093 6 6 2.8322 3.2798 -1.1985 7 7 3.6609 3.6081 -0.2300 8 14 2.5003 4.4799 -2.5908 9 1 1.0530 4.8107 -2.6248 10 1 3.2861 5.7209 -2.3725 11 1 2.8974 3.8626 -3.8817 12 6 2.3071 2.0560 1.2679 13 6 3.7447 1.8142 1.6496 14 8 4.4578 1.1437 0.9333 15 7 4.2381 2.3429 2.7869 16 6 3.3769 3.1532 3.6518 17 6 5.6341 2.1027 3.1610 18 1 6.1126 1.4845 2.4016 19 6 5.6838 1.3831 4.5103 20 6 6.3593 3.4195 3.2670 21 6 7.6117 3.6415 2.8453 22 6 7.9015 5.0486 3.1466 23 6 9.0065 5.8779 2.9603 24 6 8.9506 7.1827 3.3655 25 6 7.8019 7.6852 3.9595 26 6 6.6996 6.8803 4.1518 27 6 6.7353 5.5515 3.7474 28 8 5.8416 4.5432 3.7932 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.0990 4.4735 -0.2392 35 1 1.6534 1.6623 2.0461 36 1 2.1359 3.1267 1.1568 37 1 3.4461 4.1999 3.3555 38 1 2.3450 2.8159 3.5557 39 1 3.6991 3.0468 4.6876 40 1 5.2053 2.0014 5.2698 41 1 5.1593 0.4306 4.4336 42 1 6.7224 1.2040 4.7884 43 1 8.2746 2.9285 2.3779 44 1 9.9028 5.4914 2.4980 45 1 9.8058 7.8263 3.2214 46 1 7.7711 8.7179 4.2744 47 1 5.8104 7.2814 4.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121041223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:48 Heat of formation + Delta-G solvation = 33.361917 kcal Electronic energy + Delta-G solvation = -29274.635868 eV Core-core repulsion = 25425.510778 eV Total energy + Delta-G solvation = -3849.125090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25132 -38.84194 -37.73069 -35.95245 -34.71805 -32.83945 -31.84535 -31.32812 -30.29332 -29.10861 -28.40292 -26.58981 -26.17827 -23.95241 -23.42685 -22.52357 -21.55479 -20.83738 -20.16625 -18.56598 -17.20925 -16.66877 -16.53426 -16.10463 -15.91988 -15.53584 -15.10224 -14.66303 -14.29247 -13.96488 -13.76180 -13.66231 -13.43616 -13.15978 -12.84544 -12.65652 -12.54987 -12.26689 -12.10385 -12.08357 -11.96855 -11.77703 -11.64039 -11.45025 -11.23901 -11.07166 -11.03535 -10.83489 -10.70439 -10.40505 -10.16075 -9.91692 -9.86343 -9.75138 -8.77027 -8.49666 -8.24102 -7.95654 -7.82701 -6.88589 -5.77188 -3.02567 1.03697 1.47369 2.56200 2.90046 3.42992 3.49707 3.50435 3.80401 3.84854 4.20299 4.52745 4.57717 4.78917 4.97118 5.18919 5.22679 5.32827 5.37001 5.38297 5.45395 5.47636 5.51792 5.61893 5.80458 5.84090 5.90985 5.95391 5.97549 5.99439 6.18729 6.26336 6.31312 6.32546 6.34017 6.35335 6.43185 6.49334 6.58821 6.61003 6.64598 6.77857 6.85339 7.09089 7.20660 7.28557 7.47762 7.81235 8.26900 8.46860 9.19053 9.63996 9.89537 10.30914 11.32328 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004104 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.058287 B = 6820.742631 C = 8142.150569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 N -0.576 5.576 4 C -0.246 4.246 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.285 1.285 12 C 0.169 3.831 13 C 0.536 3.464 14 O -0.529 6.529 15 N -0.625 5.625 16 C 0.094 3.906 17 C 0.214 3.786 18 H 0.125 0.875 19 C -0.158 4.158 20 C 0.058 3.942 21 C -0.215 4.215 22 C -0.122 4.122 23 C -0.075 4.075 24 C -0.141 4.141 25 C -0.104 4.104 26 C -0.105 4.105 27 C 0.049 3.951 28 O -0.180 6.180 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.253 0.747 35 H 0.036 0.964 36 H 0.104 0.896 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 2.760 13.390 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.295 5.295 4 C -0.375 4.375 5 H 0.094 0.906 6 C -0.198 4.198 7 N -0.540 5.540 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.212 1.212 12 C 0.038 3.962 13 C 0.325 3.675 14 O -0.402 6.402 15 N -0.363 5.363 16 C -0.050 4.050 17 C 0.109 3.891 18 H 0.143 0.857 19 C -0.216 4.216 20 C 0.009 3.991 21 C -0.235 4.235 22 C -0.123 4.123 23 C -0.093 4.093 24 C -0.159 4.159 25 C -0.122 4.122 26 C -0.123 4.123 27 C 0.002 3.998 28 O -0.081 6.081 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.148 0.852 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.396 2.530 13.035 14.333 hybrid contribution 0.304 1.006 -0.882 1.372 sum 5.699 3.536 12.153 13.881 Atomic orbital electron populations 1.22318 0.99541 0.99098 1.01476 1.20714 0.91843 0.86326 0.99175 1.43967 1.73947 1.09522 1.02108 1.19177 1.32634 0.99295 0.86379 0.90563 1.24667 0.97509 0.99482 0.98136 1.69863 1.27692 1.21671 1.34810 0.86386 0.77722 0.80989 0.81965 1.21280 1.21914 1.21183 1.20734 0.88791 1.00135 0.86518 1.22328 0.92457 0.75954 0.76804 1.90490 1.60456 1.40296 1.48947 1.48230 1.08688 1.54661 1.24703 1.21537 0.94320 0.95613 0.93518 1.19551 0.84319 0.87122 0.98110 0.85734 1.22175 1.02339 1.00835 0.96250 1.23046 0.92857 0.87577 0.95614 1.22153 0.97389 0.94932 1.09045 1.19961 0.95320 0.94394 1.02580 1.20257 0.96961 0.93111 0.99002 1.20697 0.98575 0.95416 1.01226 1.20834 0.92494 0.99274 0.99615 1.19906 1.00046 0.88842 1.03534 1.19688 0.88391 0.90365 1.01388 1.84026 1.39558 1.17115 1.67408 0.93797 0.92850 0.94305 0.93669 0.94711 0.93666 0.94608 0.87844 0.93109 0.91514 0.92583 0.92061 0.91153 0.91639 0.82774 0.85861 0.85764 0.85196 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.23 37.16 0.38 -2.54 16 2 C 0.15 3.10 6.39 -4.04 -0.03 3.07 16 3 N -0.58 -14.42 2.02 -174.61 -0.35 -14.77 16 4 C -0.25 -6.79 9.70 -15.06 -0.15 -6.94 16 5 H 0.08 2.09 7.94 -52.48 -0.42 1.67 16 6 C 0.00 -0.01 4.90 -17.43 -0.09 -0.10 16 7 N -0.89 -25.62 8.96 55.49 0.50 -25.12 16 8 Si 0.90 22.24 29.62 -169.99 -5.04 17.21 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.17 3.91 3.97 -5.20 -0.02 3.89 16 13 C 0.54 12.60 5.74 -10.99 -0.06 12.53 16 14 O -0.53 -14.56 15.49 5.55 0.09 -14.48 16 15 N -0.62 -12.00 2.75 -175.27 -0.48 -12.49 16 16 C 0.09 1.49 8.78 59.85 0.53 2.02 16 17 C 0.21 3.69 3.09 -69.08 -0.21 3.48 16 18 H 0.13 2.40 6.88 -51.93 -0.36 2.04 16 19 C -0.16 -2.05 9.15 37.16 0.34 -1.71 16 20 C 0.06 1.02 6.02 -35.80 -0.22 0.80 16 21 C -0.22 -3.61 10.99 -37.62 -0.41 -4.02 16 22 C -0.12 -1.98 6.40 -105.16 -0.67 -2.65 16 23 C -0.08 -1.02 10.05 -39.69 -0.40 -1.42 16 24 C -0.14 -1.64 9.98 -39.94 -0.40 -2.04 16 25 C -0.10 -1.20 10.01 -39.54 -0.40 -1.59 16 26 C -0.10 -1.42 10.07 -39.47 -0.40 -1.82 16 27 C 0.05 0.81 7.42 -38.47 -0.29 0.53 16 28 O -0.18 -3.17 8.71 3.90 0.03 -3.13 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.98 8.06 -51.93 -0.42 0.57 16 33 H 0.03 0.70 8.06 -51.93 -0.42 0.29 16 34 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.04 0.72 7.33 -51.93 -0.38 0.34 16 36 H 0.10 2.60 6.26 -51.93 -0.33 2.28 16 37 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 38 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 39 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 40 H 0.06 0.74 6.66 -51.93 -0.35 0.40 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -33.54 382.64 -9.06 -42.60 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.08 Total: 2.92 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.49 Total: 1.50 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.34 Total: -52.38 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.12 Total: -17.61 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.04 Total: 17.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.54 -9.06 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121041223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.962 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds