Wall clock time and date at job start Tue Mar 31 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47060 * 2 1 4 4 C 1.36939 * 120.00236 * 272.13645 * 3 2 1 5 5 H 1.08005 * 119.99537 * 8.57062 * 4 3 2 6 6 C 1.38809 * 120.00323 * 188.56783 * 4 3 2 7 7 N 1.31622 * 119.99797 * 24.82933 * 6 4 3 8 8 Si 1.86797 * 120.00078 * 204.82953 * 6 4 3 9 9 H 1.48503 * 109.47031 * 60.00185 * 8 6 4 10 10 H 1.48501 * 109.46814 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47182 * 300.00021 * 8 6 4 12 12 C 1.46501 * 119.99739 * 92.13766 * 3 2 1 13 13 C 1.50693 * 109.47090 * 90.00127 * 12 3 2 14 14 O 1.21288 * 120.00008 * 359.97438 * 13 12 3 15 15 N 1.34776 * 120.00126 * 179.97438 * 13 12 3 16 16 C 1.46502 * 119.99871 * 359.97438 * 15 13 12 17 17 C 1.46507 * 120.00040 * 179.72437 * 15 13 12 18 18 H 1.08998 * 109.47315 * 0.27539 * 17 15 13 19 19 C 1.52995 * 109.46752 * 240.27174 * 17 15 13 20 20 C 1.50700 * 109.46810 * 120.27366 * 17 15 13 21 21 C 1.33997 * 124.91759 * 219.99613 * 20 17 15 22 22 C 1.46793 * 106.18312 * 179.97438 * 21 20 17 23 23 C 1.39404 * 134.36983 * 180.02562 * 22 21 20 24 24 C 1.36741 * 119.71387 * 179.97438 * 23 22 21 25 25 C 1.38746 * 120.41768 * 359.97438 * 24 23 22 26 26 C 1.37844 * 120.68539 * 0.02562 * 25 24 23 27 27 C 1.38940 * 119.82041 * 359.97438 * 26 25 24 28 28 O 1.34450 * 124.92557 * 39.70125 * 20 17 15 29 29 H 1.09001 * 109.46817 * 300.00103 * 1 2 3 30 30 H 1.08997 * 109.47103 * 59.99799 * 1 2 3 31 31 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46818 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47103 * 120.00201 * 2 1 3 34 34 H 0.96999 * 120.00165 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.46996 * 329.99875 * 12 3 2 36 36 H 1.08997 * 109.47115 * 209.99728 * 12 3 2 37 37 H 1.08999 * 109.47021 * 269.72658 * 16 15 13 38 38 H 1.08990 * 109.47059 * 29.72594 * 16 15 13 39 39 H 1.08997 * 109.46975 * 149.72846 * 16 15 13 40 40 H 1.09003 * 109.47703 * 299.99784 * 19 17 15 41 41 H 1.09003 * 109.47408 * 60.00742 * 19 17 15 42 42 H 1.09005 * 109.46862 * 179.97438 * 19 17 15 43 43 H 1.07994 * 126.90994 * 359.96847 * 21 20 17 44 44 H 1.07998 * 120.14272 * 359.97438 * 23 22 21 45 45 H 1.07995 * 119.78980 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.65534 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.08907 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2049 2.0416 -1.1851 5 1 1.8639 1.5989 -2.1093 6 6 2.8322 3.2798 -1.1985 7 7 3.6609 3.6081 -0.2300 8 14 2.5003 4.4799 -2.5908 9 1 1.0530 4.8107 -2.6248 10 1 3.2861 5.7209 -2.3725 11 1 2.8974 3.8626 -3.8817 12 6 2.3071 2.0560 1.2679 13 6 3.7447 1.8142 1.6496 14 8 4.4578 1.1437 0.9333 15 7 4.2381 2.3429 2.7869 16 6 3.3769 3.1532 3.6518 17 6 5.6341 2.1027 3.1610 18 1 6.1126 1.4845 2.4016 19 6 5.6838 1.3831 4.5103 20 6 6.3593 3.4195 3.2670 21 6 7.6117 3.6415 2.8453 22 6 7.9015 5.0486 3.1466 23 6 9.0065 5.8779 2.9603 24 6 8.9506 7.1827 3.3655 25 6 7.8019 7.6852 3.9595 26 6 6.6996 6.8803 4.1518 27 6 6.7353 5.5515 3.7474 28 8 5.8416 4.5432 3.7932 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.0990 4.4735 -0.2392 35 1 1.6534 1.6623 2.0461 36 1 2.1359 3.1267 1.1568 37 1 3.4461 4.1999 3.3555 38 1 2.3450 2.8159 3.5557 39 1 3.6991 3.0468 4.6876 40 1 5.2053 2.0014 5.2698 41 1 5.1593 0.4306 4.4336 42 1 6.7224 1.2040 4.7884 43 1 8.2746 2.9285 2.3779 44 1 9.9028 5.4914 2.4980 45 1 9.8058 7.8263 3.2214 46 1 7.7711 8.7179 4.2744 47 1 5.8104 7.2814 4.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121041223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:45 Heat of formation + Delta-G solvation = 15.068879 kcal Electronic energy + Delta-G solvation = -29275.429114 eV Core-core repulsion = 25425.510778 eV Total energy + Delta-G solvation = -3849.918336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -43.44675 -40.50260 -38.83819 -37.64323 -36.45872 -34.11583 -33.78665 -32.63121 -31.33975 -30.81939 -29.54504 -28.44060 -27.57376 -25.61020 -24.81975 -23.65427 -22.81846 -22.29732 -21.66480 -20.17902 -18.56093 -18.34555 -17.90217 -17.68133 -17.21713 -16.97603 -16.67277 -16.16126 -15.82427 -15.49621 -15.34217 -15.03387 -14.75694 -14.37182 -14.25477 -14.11288 -14.01124 -13.80671 -13.46273 -13.35863 -13.23477 -13.12683 -13.04789 -12.88118 -12.79972 -12.67326 -12.52103 -12.34497 -12.27284 -12.02780 -11.86812 -11.75695 -11.58665 -11.07177 -10.71900 -10.22573 -9.57442 -9.42034 -9.11350 -8.85017 -7.87394 -5.13257 -0.04758 0.41264 1.31974 1.44273 1.45969 1.52894 1.69684 2.27049 2.45450 2.61532 2.77733 3.28190 3.33367 3.64802 3.72100 3.95131 4.06218 4.13508 4.18147 4.26028 4.33348 4.39711 4.40585 4.46465 4.53153 4.62177 4.68104 4.77361 4.77734 4.81721 4.87404 4.91133 4.99426 5.00436 5.07325 5.17518 5.25752 5.27969 5.30990 5.34420 5.45725 5.49976 5.60897 5.64877 5.72509 5.89822 6.22771 6.25409 6.77083 7.13333 7.78002 7.98072 8.27427 9.17586 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004104 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.058287 B = 6820.742631 C = 8142.150569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 N -0.594 5.594 4 C -0.254 4.254 5 H 0.072 0.928 6 C -0.049 4.049 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.302 1.302 11 H -0.286 1.286 12 C 0.171 3.829 13 C 0.535 3.465 14 O -0.580 6.580 15 N -0.622 5.622 16 C 0.094 3.906 17 C 0.213 3.787 18 H 0.095 0.905 19 C -0.144 4.144 20 C 0.038 3.962 21 C -0.227 4.227 22 C -0.150 4.150 23 C -0.089 4.089 24 C -0.134 4.134 25 C -0.092 4.092 26 C -0.119 4.119 27 C 0.019 3.981 28 O -0.192 6.192 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.239 0.761 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 4.113 14.942 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 N -0.314 5.314 4 C -0.383 4.383 5 H 0.090 0.910 6 C -0.244 4.244 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.229 1.229 11 H -0.213 1.213 12 C 0.041 3.959 13 C 0.324 3.676 14 O -0.458 6.458 15 N -0.357 5.357 16 C -0.049 4.049 17 C 0.108 3.892 18 H 0.113 0.887 19 C -0.202 4.202 20 C -0.011 4.011 21 C -0.247 4.247 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.152 4.152 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.028 4.028 28 O -0.093 6.093 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.179 0.821 44 H 0.158 0.842 45 H 0.179 0.821 46 H 0.187 0.813 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.255 3.884 14.633 16.026 hybrid contribution 0.436 0.652 -1.322 1.538 sum 5.691 4.536 13.311 15.171 Atomic orbital electron populations 1.22124 0.96340 1.01155 1.01231 1.20887 0.94128 0.84550 0.98856 1.44215 1.74327 1.10943 1.01916 1.19394 1.31839 0.99730 0.87379 0.91050 1.25307 0.97804 1.00837 1.00470 1.70070 1.28503 1.20822 1.36282 0.85473 0.77721 0.78582 0.79502 1.20105 1.22930 1.21257 1.20685 0.89436 0.98914 0.86883 1.22270 0.92435 0.75569 0.77284 1.90455 1.61582 1.42812 1.50973 1.48104 1.09924 1.53784 1.23929 1.21680 0.94694 0.94082 0.94413 1.19624 0.82738 0.87339 0.99489 0.88668 1.22086 1.03844 1.00513 0.93773 1.23007 0.93273 0.87839 0.96979 1.22432 0.97623 0.95930 1.08712 1.20240 0.96613 0.94344 1.03899 1.20620 0.96817 0.93897 0.99322 1.21195 0.99768 0.94887 0.99349 1.21383 0.91345 1.00694 0.97585 1.20342 1.01706 0.87869 1.03789 1.20257 0.88520 0.91310 1.02761 1.83959 1.40173 1.17368 1.67842 0.92972 0.94090 0.91063 0.95119 0.93954 0.95149 0.91210 0.90065 0.94823 0.90063 0.89504 0.90741 0.90717 0.89836 0.82133 0.84221 0.82106 0.81251 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 10.23 71.98 0.74 -4.28 16 2 C 0.14 5.95 6.39 86.38 0.55 6.50 16 3 N -0.59 -30.07 2.02 -706.35 -1.43 -31.49 16 4 C -0.25 -14.28 9.70 84.03 0.82 -13.46 16 5 H 0.07 3.98 7.94 -2.91 -0.02 3.96 16 6 C -0.05 -2.80 4.90 84.86 0.42 -2.38 16 7 N -0.91 -53.90 8.96 21.65 0.19 -53.71 16 8 Si 0.96 46.79 29.62 68.60 2.03 48.82 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 C 0.17 8.00 3.97 85.63 0.34 8.34 16 13 C 0.53 25.85 5.74 87.66 0.50 26.35 16 14 O -0.58 -33.37 15.49 -3.05 -0.05 -33.41 16 15 N -0.62 -24.35 2.75 -826.81 -2.28 -26.63 16 16 C 0.09 2.95 8.78 127.77 1.12 4.08 16 17 C 0.21 7.58 3.09 44.24 0.14 7.71 16 18 H 0.10 3.93 6.88 -2.39 -0.02 3.91 16 19 C -0.14 -3.65 9.15 71.98 0.66 -2.99 16 20 C 0.04 1.38 6.02 24.72 0.15 1.53 16 21 C -0.23 -7.97 10.99 23.54 0.26 -7.71 16 22 C -0.15 -4.94 6.40 -20.21 -0.13 -5.07 16 23 C -0.09 -2.29 10.05 22.20 0.22 -2.07 16 24 C -0.13 -2.71 9.98 22.04 0.22 -2.49 16 25 C -0.09 -1.83 10.01 22.30 0.22 -1.61 16 26 C -0.12 -3.04 10.07 22.34 0.23 -2.82 16 27 C 0.02 0.62 7.42 22.99 0.17 0.79 16 28 O -0.19 -6.91 8.71 -8.95 -0.08 -6.99 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 33 H 0.04 1.69 8.06 -2.39 -0.02 1.67 16 34 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.07 2.72 7.33 -2.39 -0.02 2.70 16 36 H 0.08 4.18 6.26 -2.39 -0.01 4.16 16 37 H 0.03 1.18 7.53 -2.39 -0.02 1.16 16 38 H 0.08 2.28 6.43 -2.39 -0.02 2.27 16 39 H 0.09 2.18 6.43 -2.39 -0.02 2.16 16 40 H 0.07 1.68 6.66 -2.39 -0.02 1.67 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.16 5.10 8.06 -2.91 -0.02 5.07 16 44 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 45 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 47 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -76.32 382.64 5.98 -70.35 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.96 Total: 22.64 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.62 Total: 10.43 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.51 Total: -111.83 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.13 Total: -40.40 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -76.32 5.98 -70.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121041223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.414 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds