Wall clock time and date at job start Tue Mar 31 2020 17:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47103 * 2 1 4 4 C 1.46504 * 120.00006 * 274.84938 * 3 2 1 5 5 C 1.50693 * 109.46876 * 263.31623 * 4 3 2 6 6 H 1.08002 * 120.00589 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99952 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00057 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47222 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46657 * 120.00301 * 9 7 5 12 12 H 1.48494 * 109.47377 * 240.00194 * 9 7 5 13 13 C 1.34786 * 120.00204 * 94.85016 * 3 2 1 14 14 O 1.21359 * 119.99622 * 354.72053 * 13 3 2 15 15 C 1.49345 * 119.99997 * 174.72092 * 13 3 2 16 16 O 1.21380 * 120.00207 * 0.57508 * 15 13 3 17 17 N 1.34782 * 120.00048 * 180.56893 * 15 13 3 18 18 C 1.39724 * 120.00348 * 185.74456 * 17 15 13 19 19 C 1.38672 * 119.80727 * 24.11416 * 18 17 15 20 20 C 1.38085 * 119.68876 * 179.97438 * 19 18 17 21 21 C 1.38033 * 119.85196 * 0.13944 * 20 19 18 22 22 C 1.38939 * 120.70540 * 359.97438 * 21 20 19 23 23 C 1.37564 * 119.73304 * 359.73135 * 22 21 20 24 24 C 1.50615 * 122.59273 * 180.80632 * 23 22 21 25 25 C 1.52737 * 110.60272 * 342.01590 * 24 23 22 26 26 C 1.53321 * 108.40150 * 51.06531 * 25 24 23 27 27 C 1.50646 * 117.72361 * 179.40948 * 22 21 20 28 28 H 1.09003 * 109.47302 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47180 * 300.00285 * 1 2 3 31 31 H 1.08998 * 109.47180 * 239.99715 * 2 1 3 32 32 H 1.08999 * 109.46832 * 119.99949 * 2 1 3 33 33 H 1.08994 * 109.46829 * 23.31886 * 4 3 2 34 34 H 1.08999 * 109.46912 * 143.31456 * 4 3 2 35 35 H 0.97002 * 120.00306 * 180.02562 * 8 7 5 36 36 H 0.97002 * 119.99192 * 5.74546 * 17 15 13 37 37 H 1.07998 * 120.15926 * 0.02562 * 19 18 17 38 38 H 1.07996 * 120.07172 * 179.86988 * 20 19 18 39 39 H 1.07999 * 119.64326 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.25402 * 102.30722 * 24 23 22 41 41 H 1.08994 * 109.25053 * 221.73016 * 24 23 22 42 42 H 1.09000 * 109.67495 * 291.34051 * 25 24 23 43 43 H 1.08992 * 109.67902 * 170.79447 * 25 24 23 44 44 H 1.08996 * 109.68098 * 170.49781 * 26 25 24 45 45 H 1.09009 * 109.67859 * 49.94801 * 26 25 24 46 46 H 1.08997 * 109.25594 * 282.49234 * 27 22 21 47 47 H 1.09000 * 109.25197 * 41.91964 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1614 2.1076 -1.2642 5 6 3.5904 2.0206 -1.7345 6 1 4.3193 1.4788 -1.1501 7 6 3.9674 2.6327 -2.9111 8 7 3.0800 3.2928 -3.6227 9 14 5.7390 2.5255 -3.4938 10 1 6.5329 1.7325 -2.5211 11 1 5.7836 1.8655 -4.8234 12 1 6.3086 3.8927 -3.6005 13 6 2.3360 1.9837 1.1631 14 8 2.1278 1.4178 2.2162 15 6 2.9443 3.3477 1.1557 16 8 3.1429 3.9180 0.1028 17 7 3.2725 3.9455 2.3182 18 6 3.7291 5.2660 2.3203 19 6 3.3903 6.1141 1.2768 20 6 3.8425 7.4189 1.2816 21 6 4.6300 7.8693 2.3219 22 6 4.9745 7.0233 3.3688 23 6 4.5223 5.7241 3.3731 24 6 4.8415 4.7576 4.4833 25 6 6.0339 5.2519 5.2999 26 6 5.7699 6.7052 5.7110 27 6 5.8479 7.5810 4.4621 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5047 1.6656 -2.0134 34 1 1.8908 3.1529 -1.1152 35 1 3.3451 3.7231 -4.4506 36 1 3.1918 3.4588 3.1534 37 1 2.7751 5.7562 0.4646 38 1 3.5841 8.0841 0.4710 39 1 4.9821 8.8903 2.3220 40 1 3.9741 4.6610 5.1363 41 1 5.0783 3.7838 4.0550 42 1 6.9394 5.2002 4.6954 43 1 6.1505 4.6341 6.1902 44 1 6.5225 7.0254 6.4315 45 1 4.7777 6.7866 6.1550 46 1 6.8800 7.6189 4.1136 47 1 5.5153 8.5893 4.7088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123963063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:47 Heat of formation + Delta-G solvation = -59.040580 kcal Electronic energy + Delta-G solvation = -28985.585364 eV Core-core repulsion = 25132.453401 eV Total energy + Delta-G solvation = -3853.131963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24483 -40.95119 -39.48199 -37.51842 -36.84525 -35.87020 -34.70000 -32.37671 -32.06559 -31.14274 -29.50373 -29.01798 -26.42756 -25.03846 -24.65087 -24.09624 -23.55943 -21.97209 -20.90891 -20.17102 -19.10491 -18.60892 -18.13673 -17.54185 -16.95085 -16.80568 -16.59501 -16.35381 -15.90229 -15.76626 -15.42005 -15.09643 -14.73345 -14.57518 -14.51114 -14.41187 -14.25141 -13.88063 -13.70258 -13.50955 -13.33577 -13.17469 -13.05282 -12.80339 -12.71956 -12.58748 -12.40635 -12.32342 -12.07911 -11.81561 -11.80848 -11.69204 -11.43743 -11.37724 -11.12979 -10.61974 -10.15556 -9.67554 -9.47782 -8.97785 -8.16530 -6.24147 0.05594 0.43389 0.73044 1.34254 1.36617 1.39479 1.47011 2.19322 2.37893 2.59930 2.83335 3.17739 3.36279 3.70186 3.73513 4.06421 4.11347 4.12883 4.19267 4.26596 4.32506 4.42205 4.49301 4.52706 4.61536 4.66960 4.69459 4.73512 4.89295 4.91766 4.99246 5.01391 5.05941 5.10887 5.16495 5.20957 5.28602 5.33804 5.37144 5.46239 5.49860 5.53118 5.64188 5.69749 5.73892 6.06997 6.11728 6.13756 6.28721 6.74611 6.80630 7.05370 7.41525 8.92029 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004174 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.801268 B = 6706.451698 C = 8103.303560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.564 5.564 4 C 0.249 3.751 5 C -0.516 4.516 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.286 1.286 13 C 0.504 3.496 14 O -0.559 6.559 15 C 0.483 3.517 16 O -0.464 6.464 17 N -0.642 5.642 18 C 0.133 3.867 19 C -0.163 4.163 20 C -0.108 4.108 21 C -0.140 4.140 22 C -0.062 4.062 23 C -0.110 4.110 24 C -0.085 4.085 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.076 4.076 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.423 0.577 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 5.882 17.703 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.294 5.294 4 C 0.129 3.871 5 C -0.555 4.555 6 H 0.061 0.939 7 C -0.175 4.175 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.212 1.212 13 C 0.287 3.713 14 O -0.441 6.441 15 C 0.265 3.735 16 O -0.335 6.335 17 N -0.289 5.289 18 C 0.039 3.961 19 C -0.183 4.183 20 C -0.127 4.127 21 C -0.158 4.158 22 C -0.062 4.062 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.113 4.113 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.262 0.738 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.676 5.988 17.234 18.439 hybrid contribution 0.525 -0.332 -0.900 1.094 sum 3.201 5.655 16.334 17.579 Atomic orbital electron populations 1.22030 0.94033 1.03612 1.01500 1.21711 0.95802 0.80828 1.03516 1.48300 1.59217 1.14713 1.07210 1.19429 0.96289 0.92357 0.79021 1.21363 0.95037 1.32763 1.06289 0.93946 1.25479 1.00693 0.94629 0.96738 1.70011 1.35258 1.35267 1.15461 0.85655 0.80906 0.77577 0.78367 1.19850 1.19629 1.21208 1.19870 0.80191 0.86723 0.84544 1.90627 1.56304 1.66478 1.30655 1.20501 0.80805 0.87908 0.84328 1.90952 1.47835 1.64334 1.30339 1.43113 1.63804 1.12186 1.09821 1.18022 0.97680 0.83089 0.97321 1.21356 1.03000 0.94593 0.99348 1.21148 0.97868 0.94491 0.99185 1.21431 0.99571 1.01035 0.93793 1.19791 0.97645 0.91795 0.96987 1.19547 0.98750 0.96196 0.96771 1.20483 1.00429 0.96443 0.94832 1.21521 0.96565 0.97386 0.99718 1.21558 1.02892 0.94028 0.96849 1.20546 0.98480 0.99866 0.92421 0.93096 0.88576 0.93308 0.89672 0.89739 0.95838 0.94202 0.92785 0.73770 0.86677 0.84842 0.83286 0.89481 0.91942 0.92213 0.89659 0.89323 0.91452 0.89831 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 10.24 71.98 0.74 -3.77 16 2 C 0.10 3.61 6.11 86.38 0.53 4.14 16 3 N -0.56 -24.62 2.48 -827.87 -2.05 -26.67 16 4 C 0.25 12.83 4.79 85.63 0.41 13.24 16 5 C -0.52 -28.93 7.77 25.60 0.20 -28.73 16 6 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 7 C 0.02 1.37 5.46 84.66 0.46 1.83 16 8 N -0.92 -54.53 13.29 21.45 0.28 -54.25 16 9 Si 0.95 45.54 29.54 68.60 2.03 47.56 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 C 0.50 21.69 7.67 87.23 0.67 22.36 16 14 O -0.56 -23.16 16.04 -3.27 -0.05 -23.21 16 15 C 0.48 20.92 7.52 87.24 0.66 21.58 16 16 O -0.46 -23.50 9.22 -3.34 -0.03 -23.53 16 17 N -0.64 -22.81 4.95 -304.56 -1.51 -24.31 16 18 C 0.13 4.59 6.41 38.30 0.25 4.84 16 19 C -0.16 -6.08 8.71 22.34 0.19 -5.88 16 20 C -0.11 -3.29 10.04 22.18 0.22 -3.07 16 21 C -0.14 -3.41 9.60 22.39 0.21 -3.20 16 22 C -0.06 -1.45 5.74 -19.87 -0.11 -1.57 16 23 C -0.11 -3.01 5.75 -19.73 -0.11 -3.12 16 24 C -0.08 -1.82 4.75 29.73 0.14 -1.67 16 25 C -0.11 -1.84 5.98 30.61 0.18 -1.65 16 26 C -0.12 -1.53 5.98 30.61 0.18 -1.35 16 27 C -0.08 -1.18 5.67 29.74 0.17 -1.01 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 32 H 0.08 2.82 7.36 -2.39 -0.02 2.80 16 33 H 0.02 1.25 8.02 -2.39 -0.02 1.23 16 34 H 0.04 2.27 5.85 -2.39 -0.01 2.26 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.42 12.94 6.88 -92.71 -0.64 12.31 16 37 H 0.12 5.08 5.72 -2.91 -0.02 5.07 16 38 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.15 2.64 8.05 -2.91 -0.02 2.61 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.47 7.40 -2.39 -0.02 1.45 16 42 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.90 8.10 -2.38 -0.02 0.88 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 Total: -1.00 -68.95 377.90 4.00 -64.95 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.34 Total: 26.49 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.99 Total: 12.97 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.27 Total: -105.23 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.08 Total: -46.74 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.95 4.00 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123963063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.909 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds