Wall clock time and date at job start Tue Mar 31 2020 16:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46797 * 2 1 4 4 O 1.42904 * 109.46975 * 119.99894 * 2 1 3 5 5 C 1.35899 * 116.99625 * 277.06785 * 4 2 1 6 6 C 1.38758 * 120.05884 * 0.85643 * 5 4 2 7 7 C 1.38122 * 119.94208 * 179.97438 * 6 5 4 8 8 C 1.38287 * 120.05788 * 0.03003 * 7 6 5 9 9 C 1.38242 * 120.11145 * 359.96747 * 8 7 6 10 10 C 1.50696 * 119.97091 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47326 * 0.02562 * 10 9 8 12 12 C 1.53005 * 109.46914 * 120.00240 * 10 9 8 13 13 C 1.52999 * 109.47441 * 240.00159 * 10 9 8 14 14 C 1.38170 * 120.05584 * 0.02562 * 9 8 7 15 15 C 1.50695 * 109.46959 * 239.99661 * 2 1 3 16 16 O 1.21291 * 120.00147 * 259.53357 * 15 2 1 17 17 N 1.34782 * 119.99888 * 79.53698 * 15 2 1 18 18 C 1.37102 * 119.99458 * 185.05827 * 17 15 2 19 19 H 1.07993 * 120.00452 * 346.11436 * 18 17 15 20 20 C 1.38952 * 119.99412 * 166.11026 * 18 17 15 21 21 N 1.31412 * 120.00299 * 359.38079 * 20 18 17 22 22 Si 1.86794 * 119.99798 * 179.37359 * 20 18 17 23 23 H 1.48503 * 109.46819 * 90.00475 * 22 20 18 24 24 H 1.48509 * 109.47346 * 210.00321 * 22 20 18 25 25 H 1.48497 * 109.47320 * 330.00445 * 22 20 18 26 26 C 1.46496 * 119.99890 * 5.05919 * 17 15 2 27 27 C 1.47203 * 109.46799 * 264.52630 * 26 17 15 28 28 N 4.22583 * 56.32193 * 296.75776 * 2 1 3 29 29 H 1.08999 * 109.46915 * 53.66059 * 1 2 3 30 30 H 1.08998 * 109.47373 * 173.65534 * 1 2 3 31 31 H 1.09001 * 109.46983 * 293.65916 * 1 2 3 32 32 H 1.08000 * 120.02719 * 359.96108 * 6 5 4 33 33 H 1.07998 * 119.96990 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.94219 * 179.69676 * 8 7 6 35 35 H 1.09005 * 109.47603 * 59.99819 * 11 10 9 36 36 H 1.08996 * 109.47305 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.47021 * 300.00024 * 11 10 9 38 38 H 1.08993 * 109.47351 * 59.99968 * 12 10 9 39 39 H 1.09006 * 109.46891 * 179.97438 * 12 10 9 40 40 H 1.09005 * 109.47013 * 299.99568 * 12 10 9 41 41 H 1.09000 * 109.47137 * 59.99762 * 13 10 9 42 42 H 1.08996 * 109.47073 * 180.02562 * 13 10 9 43 43 H 1.09003 * 109.47026 * 299.99925 * 13 10 9 44 44 H 1.08000 * 120.02720 * 180.02562 * 14 9 8 45 45 H 0.96996 * 120.00554 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.47147 * 24.52621 * 26 17 15 47 47 H 1.09006 * 109.46989 * 144.53038 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0715 0.0515 2.3144 6 6 1.6681 1.3791 2.3215 7 6 1.7349 2.1137 3.4893 8 6 2.2037 1.5272 4.6506 9 6 2.6062 0.2047 4.6461 10 6 3.1160 -0.4313 5.9136 11 6 3.0848 0.5952 7.0477 12 6 2.2279 -1.6222 6.2796 13 6 4.5525 -0.9129 5.7005 14 6 2.5412 -0.5345 3.4806 15 6 2.0323 -0.7105 -1.2304 16 8 2.4144 -1.8591 -1.1540 17 7 2.0571 -0.0695 -2.4158 18 6 2.4153 -0.7458 -3.5533 19 1 2.8887 -1.7136 -3.4797 20 6 2.1690 -0.1858 -4.8010 21 7 1.5819 0.9864 -4.8908 22 14 2.6728 -1.0993 -6.3505 23 1 1.5560 -1.9704 -6.7967 24 1 2.9947 -0.1203 -7.4198 25 1 3.8683 -1.9333 -6.0669 26 6 1.7013 1.3498 -2.4886 27 6 0.2820 1.4815 -2.8563 28 7 -0.8133 1.5832 -3.1400 29 1 -0.3633 0.6090 -0.8278 30 1 -0.3634 -1.0213 -0.1136 31 1 -0.3633 0.4124 0.9413 32 1 1.3026 1.8377 1.4146 33 1 1.4214 3.1471 3.4952 34 1 2.2597 2.1048 5.5615 35 1 2.0612 0.9380 7.1995 36 1 3.4540 0.1353 7.9643 37 1 3.7172 1.4439 6.7871 38 1 2.2498 -2.3536 5.4718 39 1 2.5970 -2.0826 7.1961 40 1 1.2045 -1.2791 6.4315 41 1 5.1853 -0.0645 5.4397 42 1 4.9211 -1.3733 6.6171 43 1 4.5744 -1.6444 4.8926 44 1 2.8553 -1.5678 3.4777 45 1 1.4103 1.3774 -5.7617 46 1 1.8702 1.8169 -1.5184 47 1 2.3186 1.8410 -3.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126575275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:07 Heat of formation + Delta-G solvation = -8.452707 kcal Electronic energy + Delta-G solvation = -28440.687543 eV Core-core repulsion = 24589.749235 eV Total energy + Delta-G solvation = -3850.938308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.49479 -39.29650 -38.00509 -35.96958 -35.58256 -34.33233 -32.40913 -31.34994 -30.06208 -29.54539 -27.58233 -27.38754 -27.37186 -25.45228 -23.91502 -22.85860 -21.92741 -19.97796 -18.81541 -18.10740 -17.81518 -16.49840 -16.38550 -16.07237 -15.49572 -15.21098 -14.97538 -14.67268 -14.39610 -14.28799 -13.90316 -13.52815 -13.52282 -13.36675 -13.20958 -12.84199 -12.65472 -12.41337 -12.18347 -12.11876 -11.85398 -11.83668 -11.74093 -11.66202 -11.56388 -11.39162 -11.25995 -11.17715 -11.06455 -10.82324 -10.77238 -10.54840 -10.46576 -10.45138 -10.24740 -9.37581 -8.75847 -8.66594 -8.23754 -8.01217 -6.53379 -4.14167 1.36888 1.55186 3.02607 3.09595 3.18135 3.26530 3.45349 3.77518 3.81607 3.95945 4.10791 4.44663 4.60553 4.70898 4.82788 4.83489 4.90525 4.97440 5.11628 5.15465 5.21215 5.26744 5.32245 5.37909 5.46619 5.51453 5.54448 5.59440 5.61246 5.70774 5.72939 5.82573 5.87516 5.89998 5.97494 6.00882 6.08110 6.11645 6.14838 6.36294 6.44661 6.51054 6.65312 6.68498 6.85154 7.35599 7.55731 7.78788 8.17913 8.75067 8.87907 9.05498 9.56125 10.45477 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002806 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.306213 B = 9977.023049 C =10669.655383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.283 6.283 5 C 0.142 3.858 6 C -0.219 4.219 7 C -0.077 4.077 8 C -0.168 4.168 9 C -0.034 4.034 10 C -0.029 4.029 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.140 4.140 14 C -0.151 4.151 15 C 0.461 3.539 16 O -0.552 6.552 17 N -0.441 5.441 18 C -0.299 4.299 19 H 0.112 0.888 20 C 0.029 3.971 21 N -0.895 5.895 22 Si 0.940 3.060 23 H -0.277 1.277 24 H -0.281 1.281 25 H -0.267 1.267 26 C 0.217 3.783 27 C 0.257 3.743 28 N -0.483 5.483 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.128 0.872 45 H 0.275 0.725 46 H 0.072 0.928 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 4.228 19.146 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.195 6.195 5 C 0.096 3.904 6 C -0.237 4.237 7 C -0.095 4.095 8 C -0.186 4.186 9 C -0.034 4.034 10 C -0.029 4.029 11 C -0.199 4.199 12 C -0.197 4.197 13 C -0.197 4.197 14 C -0.169 4.169 15 C 0.248 3.752 16 O -0.432 6.432 17 N -0.163 5.163 18 C -0.425 4.425 19 H 0.130 0.870 20 C -0.172 4.172 21 N -0.536 5.536 22 Si 0.767 3.233 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.192 1.192 26 C 0.090 3.910 27 C -0.060 4.060 28 N -0.165 5.165 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.146 0.854 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.033 3.681 18.537 19.008 hybrid contribution 0.349 0.003 -1.049 1.106 sum 2.382 3.683 17.487 18.029 Atomic orbital electron populations 1.22302 0.93379 1.04300 1.03076 1.22350 0.95348 0.96637 0.84531 0.89626 1.86248 1.80030 1.38099 1.15077 1.19128 0.94207 0.90257 0.86827 1.21344 1.08126 0.94242 1.00032 1.20896 0.97237 0.99255 0.92101 1.20996 1.04065 0.95018 0.98542 1.19532 0.96776 0.93530 0.93592 1.19499 0.95781 0.95515 0.92103 1.21951 1.01983 0.98646 0.97330 1.21902 0.99294 0.96993 1.01477 1.21902 0.94564 1.01408 1.01824 1.20198 1.05591 1.01017 0.90121 1.19505 0.84657 0.87259 0.83760 1.90582 1.50236 1.17514 1.84889 1.43569 1.58778 1.07468 1.06488 1.19875 1.36631 1.04140 0.81880 0.87026 1.25323 0.95947 0.96320 0.99640 1.69598 1.41844 1.16344 1.25863 0.85677 0.79085 0.78796 0.79769 1.20318 1.20664 1.19177 1.19136 0.85823 0.84972 1.01105 1.29057 0.94246 0.92471 0.90213 1.80914 1.14323 1.08609 1.12631 0.90420 0.90936 0.91386 0.85293 0.86024 0.85832 0.92254 0.92489 0.92225 0.92103 0.92423 0.92481 0.92414 0.92428 0.92065 0.85366 0.91343 0.91018 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.07 37.16 0.34 -2.59 16 2 C 0.07 1.30 1.93 -27.88 -0.05 1.24 16 3 H 0.09 1.33 4.25 -51.93 -0.22 1.11 16 4 O -0.28 -5.30 9.42 -38.53 -0.36 -5.66 16 5 C 0.14 2.21 6.52 -39.22 -0.26 1.96 16 6 C -0.22 -2.93 8.21 -39.43 -0.32 -3.25 16 7 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 8 C -0.17 -1.82 8.97 -39.56 -0.36 -2.18 16 9 C -0.03 -0.39 4.76 -104.65 -0.50 -0.89 16 10 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 11 C -0.14 -1.05 7.13 37.16 0.26 -0.79 16 12 C -0.14 -1.21 8.29 37.16 0.31 -0.90 16 13 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 14 C -0.15 -2.09 8.65 -39.43 -0.34 -2.43 16 15 C 0.46 10.59 6.88 -10.99 -0.08 10.51 16 16 O -0.55 -14.80 16.23 -13.56 -0.22 -15.02 16 17 N -0.44 -10.16 2.60 -117.94 -0.31 -10.47 16 18 C -0.30 -7.56 9.47 -14.93 -0.14 -7.70 16 19 H 0.11 2.98 7.23 -52.49 -0.38 2.60 16 20 C 0.03 0.69 5.36 -17.47 -0.09 0.60 16 21 N -0.89 -21.52 8.06 55.50 0.45 -21.08 16 22 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C 0.22 4.24 4.97 -6.83 -0.03 4.21 16 27 C 0.26 5.54 10.83 -20.76 -0.22 5.31 16 28 N -0.48 -11.15 18.43 42.15 0.78 -10.38 16 29 H 0.08 1.37 5.28 -51.93 -0.27 1.10 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 0.98 7.07 -51.93 -0.37 0.62 16 32 H 0.13 1.61 5.60 -52.49 -0.29 1.31 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.07 5.89 -52.48 -0.31 0.76 16 35 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 38 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 44 H 0.13 1.75 7.10 -52.49 -0.37 1.38 16 45 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 46 H 0.07 1.09 5.80 -51.93 -0.30 0.79 16 47 H 0.15 2.96 6.28 -51.93 -0.33 2.63 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -30.05 375.32 -7.23 -37.28 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.48 Total: 4.43 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.71 Total: 0.50 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.92 Total: -41.92 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.58 Total: -20.69 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.05 -7.23 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126575275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.825 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds