Wall clock time and date at job start Tue Mar 31 2020 16:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46797 * 2 1 4 4 O 1.42904 * 109.46975 * 119.99894 * 2 1 3 5 5 C 1.35899 * 116.99625 * 277.06785 * 4 2 1 6 6 C 1.38758 * 120.05884 * 0.85643 * 5 4 2 7 7 C 1.38122 * 119.94208 * 179.97438 * 6 5 4 8 8 C 1.38287 * 120.05788 * 0.03003 * 7 6 5 9 9 C 1.38242 * 120.11145 * 359.96747 * 8 7 6 10 10 C 1.50696 * 119.97091 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47326 * 0.02562 * 10 9 8 12 12 C 1.53005 * 109.46914 * 120.00240 * 10 9 8 13 13 C 1.52999 * 109.47441 * 240.00159 * 10 9 8 14 14 C 1.38170 * 120.05584 * 0.02562 * 9 8 7 15 15 C 1.50695 * 109.46959 * 239.99661 * 2 1 3 16 16 O 1.21291 * 120.00147 * 259.53357 * 15 2 1 17 17 N 1.34782 * 119.99888 * 79.53698 * 15 2 1 18 18 C 1.37102 * 119.99458 * 185.05827 * 17 15 2 19 19 H 1.07993 * 120.00452 * 346.11436 * 18 17 15 20 20 C 1.38952 * 119.99412 * 166.11026 * 18 17 15 21 21 N 1.31412 * 120.00299 * 359.38079 * 20 18 17 22 22 Si 1.86794 * 119.99798 * 179.37359 * 20 18 17 23 23 H 1.48503 * 109.46819 * 90.00475 * 22 20 18 24 24 H 1.48509 * 109.47346 * 210.00321 * 22 20 18 25 25 H 1.48497 * 109.47320 * 330.00445 * 22 20 18 26 26 C 1.46496 * 119.99890 * 5.05919 * 17 15 2 27 27 C 1.47203 * 109.46799 * 264.52630 * 26 17 15 28 28 N 4.22583 * 56.32193 * 296.75776 * 2 1 3 29 29 H 1.08999 * 109.46915 * 53.66059 * 1 2 3 30 30 H 1.08998 * 109.47373 * 173.65534 * 1 2 3 31 31 H 1.09001 * 109.46983 * 293.65916 * 1 2 3 32 32 H 1.08000 * 120.02719 * 359.96108 * 6 5 4 33 33 H 1.07998 * 119.96990 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.94219 * 179.69676 * 8 7 6 35 35 H 1.09005 * 109.47603 * 59.99819 * 11 10 9 36 36 H 1.08996 * 109.47305 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.47021 * 300.00024 * 11 10 9 38 38 H 1.08993 * 109.47351 * 59.99968 * 12 10 9 39 39 H 1.09006 * 109.46891 * 179.97438 * 12 10 9 40 40 H 1.09005 * 109.47013 * 299.99568 * 12 10 9 41 41 H 1.09000 * 109.47137 * 59.99762 * 13 10 9 42 42 H 1.08996 * 109.47073 * 180.02562 * 13 10 9 43 43 H 1.09003 * 109.47026 * 299.99925 * 13 10 9 44 44 H 1.08000 * 120.02720 * 180.02562 * 14 9 8 45 45 H 0.96996 * 120.00554 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.47147 * 24.52621 * 26 17 15 47 47 H 1.09006 * 109.46989 * 144.53038 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0715 0.0515 2.3144 6 6 1.6681 1.3791 2.3215 7 6 1.7349 2.1137 3.4893 8 6 2.2037 1.5272 4.6506 9 6 2.6062 0.2047 4.6461 10 6 3.1160 -0.4313 5.9136 11 6 3.0848 0.5952 7.0477 12 6 2.2279 -1.6222 6.2796 13 6 4.5525 -0.9129 5.7005 14 6 2.5412 -0.5345 3.4806 15 6 2.0323 -0.7105 -1.2304 16 8 2.4144 -1.8591 -1.1540 17 7 2.0571 -0.0695 -2.4158 18 6 2.4153 -0.7458 -3.5533 19 1 2.8887 -1.7136 -3.4797 20 6 2.1690 -0.1858 -4.8010 21 7 1.5819 0.9864 -4.8908 22 14 2.6728 -1.0993 -6.3505 23 1 1.5560 -1.9704 -6.7967 24 1 2.9947 -0.1203 -7.4198 25 1 3.8683 -1.9333 -6.0669 26 6 1.7013 1.3498 -2.4886 27 6 0.2820 1.4815 -2.8563 28 7 -0.8133 1.5832 -3.1400 29 1 -0.3633 0.6090 -0.8278 30 1 -0.3634 -1.0213 -0.1136 31 1 -0.3633 0.4124 0.9413 32 1 1.3026 1.8377 1.4146 33 1 1.4214 3.1471 3.4952 34 1 2.2597 2.1048 5.5615 35 1 2.0612 0.9380 7.1995 36 1 3.4540 0.1353 7.9643 37 1 3.7172 1.4439 6.7871 38 1 2.2498 -2.3536 5.4718 39 1 2.5970 -2.0826 7.1961 40 1 1.2045 -1.2791 6.4315 41 1 5.1853 -0.0645 5.4397 42 1 4.9211 -1.3733 6.6171 43 1 4.5744 -1.6444 4.8926 44 1 2.8553 -1.5678 3.4777 45 1 1.4103 1.3774 -5.7617 46 1 1.8702 1.8169 -1.5184 47 1 2.3186 1.8410 -3.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126575275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:06 Heat of formation + Delta-G solvation = -23.023963 kcal Electronic energy + Delta-G solvation = -28441.319400 eV Core-core repulsion = 24589.749235 eV Total energy + Delta-G solvation = -3851.570165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72967 -40.66868 -39.26568 -37.69179 -36.58815 -36.13620 -34.11522 -32.81889 -31.13323 -30.48551 -29.29802 -28.08019 -28.05061 -27.19523 -25.30106 -23.92940 -22.96643 -21.33560 -20.11704 -19.77802 -19.03180 -18.08176 -17.87644 -17.33182 -16.78339 -16.55563 -16.28164 -15.85902 -15.69244 -15.28564 -15.09892 -15.05819 -14.89834 -14.55655 -14.31174 -14.23558 -13.79680 -13.69631 -13.43700 -13.29945 -13.25677 -13.02690 -13.00544 -12.93121 -12.81947 -12.50723 -12.44186 -12.38190 -12.36754 -12.22829 -12.11933 -11.88789 -11.68493 -11.55683 -11.29936 -11.22113 -10.47703 -10.10725 -9.69127 -9.08713 -8.40161 -6.07930 0.42589 0.55950 1.31644 1.41696 1.51791 1.70995 1.73873 2.17524 2.24021 2.39360 2.85410 2.95387 3.07054 3.48774 3.62613 3.69006 3.75972 3.90821 3.94260 4.05048 4.16233 4.23158 4.37869 4.42289 4.46178 4.49905 4.55417 4.63962 4.68942 4.81114 4.86853 4.94773 4.97343 5.05198 5.06951 5.08283 5.09209 5.22020 5.30830 5.39269 5.40066 5.46199 5.46286 5.60419 5.75914 5.83196 5.95836 6.29230 6.51200 6.99424 7.04154 7.21245 7.74171 8.54539 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002806 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.306213 B = 9977.023049 C =10669.655383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 H 0.117 0.883 4 O -0.314 6.314 5 C 0.109 3.891 6 C -0.225 4.225 7 C -0.074 4.074 8 C -0.162 4.162 9 C -0.034 4.034 10 C -0.030 4.030 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.166 4.166 15 C 0.451 3.549 16 O -0.604 6.604 17 N -0.447 5.447 18 C -0.330 4.330 19 H 0.085 0.915 20 C 0.006 3.994 21 N -0.897 5.897 22 Si 0.992 3.008 23 H -0.286 1.286 24 H -0.267 1.267 25 H -0.268 1.268 26 C 0.217 3.783 27 C 0.269 3.731 28 N -0.511 5.511 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.116 0.884 45 H 0.277 0.723 46 H 0.122 0.878 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 6.700 21.115 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.134 0.866 4 O -0.227 6.227 5 C 0.064 3.936 6 C -0.243 4.243 7 C -0.092 4.092 8 C -0.180 4.180 9 C -0.034 4.034 10 C -0.030 4.030 11 C -0.196 4.196 12 C -0.196 4.196 13 C -0.197 4.197 14 C -0.185 4.185 15 C 0.240 3.760 16 O -0.488 6.488 17 N -0.168 5.168 18 C -0.457 4.457 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.537 5.537 22 Si 0.817 3.183 23 H -0.212 1.212 24 H -0.191 1.191 25 H -0.192 1.192 26 C 0.091 3.909 27 C -0.048 4.048 28 N -0.193 5.193 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.088 0.912 46 H 0.139 0.861 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.071 6.200 20.516 21.533 hybrid contribution 0.360 -0.767 -1.562 1.777 sum 2.431 5.433 18.954 19.867 Atomic orbital electron populations 1.22221 0.92462 1.03044 1.04290 1.22141 0.95679 0.97012 0.82697 0.86584 1.86197 1.80967 1.39515 1.16028 1.19419 0.96641 0.91478 0.86048 1.21504 1.08121 0.93311 1.01389 1.21291 0.96087 1.00515 0.91260 1.21401 1.02314 0.94660 0.99584 1.19848 0.96030 0.93959 0.93584 1.19583 0.95608 0.96092 0.91732 1.21940 1.02576 0.98221 0.96902 1.21898 0.99347 0.96679 1.01684 1.21900 0.94613 1.01044 1.02105 1.20313 1.06343 1.00973 0.90878 1.20376 0.83565 0.86997 0.85103 1.90536 1.52380 1.19957 1.85935 1.43700 1.58299 1.08755 1.06066 1.19755 1.38389 1.04082 0.83484 0.89686 1.25887 0.95506 0.96893 1.01206 1.69695 1.41203 1.16458 1.26362 0.84918 0.78309 0.77944 0.77179 1.21226 1.19133 1.19242 1.19380 0.84544 0.83254 1.03761 1.29367 0.94453 0.91594 0.89373 1.80917 1.15236 1.09516 1.13633 0.90929 0.93109 0.88542 0.84349 0.82861 0.82992 0.91679 0.91162 0.91696 0.93669 0.90732 0.92549 0.92568 0.90712 0.93703 0.86635 0.91218 0.86053 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 9.07 71.98 0.65 -4.77 16 2 C 0.08 3.05 1.93 29.85 0.06 3.11 16 3 H 0.12 3.38 4.25 -2.39 -0.01 3.37 16 4 O -0.31 -12.06 9.42 -74.15 -0.70 -12.76 16 5 C 0.11 3.37 6.52 22.51 0.15 3.51 16 6 C -0.22 -5.52 8.21 22.37 0.18 -5.33 16 7 C -0.07 -1.41 10.04 22.25 0.22 -1.19 16 8 C -0.16 -2.97 8.97 22.28 0.20 -2.77 16 9 C -0.03 -0.73 4.76 -19.88 -0.09 -0.83 16 10 C -0.03 -0.49 0.85 -52.93 -0.05 -0.54 16 11 C -0.14 -1.60 7.13 71.98 0.51 -1.08 16 12 C -0.14 -2.25 8.29 71.98 0.60 -1.65 16 13 C -0.14 -2.30 8.29 71.98 0.60 -1.70 16 14 C -0.17 -4.66 8.65 22.37 0.19 -4.47 16 15 C 0.45 21.27 6.88 87.65 0.60 21.87 16 16 O -0.60 -34.17 16.23 15.20 0.25 -33.93 16 17 N -0.45 -20.89 2.60 -645.42 -1.68 -22.57 16 18 C -0.33 -17.18 9.47 84.04 0.80 -16.38 16 19 H 0.09 4.80 7.23 -2.91 -0.02 4.78 16 20 C 0.01 0.27 5.36 84.93 0.45 0.72 16 21 N -0.90 -42.54 8.06 21.66 0.17 -42.36 16 22 Si 0.99 40.59 29.55 68.60 2.03 42.62 16 23 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 C 0.22 8.24 4.97 84.58 0.42 8.66 16 27 C 0.27 11.30 10.83 89.44 0.97 12.27 16 28 N -0.51 -23.19 18.43 20.01 0.37 -22.82 16 29 H 0.07 2.49 5.28 -2.39 -0.01 2.48 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 2.64 7.07 -2.39 -0.02 2.62 16 32 H 0.14 3.02 5.60 -2.91 -0.02 3.00 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 1.93 5.89 -2.91 -0.02 1.92 16 35 H 0.06 0.69 7.52 -2.38 -0.02 0.67 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.69 7.51 -2.38 -0.02 0.67 16 38 H 0.04 0.86 7.39 -2.39 -0.02 0.84 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.04 0.87 7.39 -2.39 -0.02 0.85 16 44 H 0.12 3.40 7.10 -2.91 -0.02 3.37 16 45 H 0.28 12.77 8.31 -92.71 -0.77 12.00 16 46 H 0.12 3.37 5.80 -2.39 -0.01 3.35 16 47 H 0.14 5.62 6.28 -2.38 -0.01 5.61 16 Total: -1.00 -67.80 375.32 7.90 -59.89 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.00 Total: 22.48 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.47 Total: 9.44 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.13 Total: -87.75 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.45 Total: -46.68 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -67.80 7.90 -59.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126575275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.868 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds