Wall clock time and date at job start Tue Mar 31 2020 16:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46815 * 2 1 4 4 O 1.42896 * 109.47093 * 120.00084 * 2 1 3 5 5 C 1.35905 * 116.99703 * 277.08079 * 4 2 1 6 6 C 1.38732 * 120.05765 * 0.42103 * 5 4 2 7 7 C 1.38141 * 119.94187 * 180.29789 * 6 5 4 8 8 C 1.38257 * 120.05945 * 359.96009 * 7 6 5 9 9 C 1.50707 * 119.94579 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46997 * 240.01712 * 9 8 7 11 11 C 1.52995 * 109.46853 * 0.02562 * 9 8 7 12 12 C 1.53001 * 109.46953 * 120.01788 * 9 8 7 13 13 C 1.38264 * 120.11319 * 0.03803 * 8 7 6 14 14 C 1.38149 * 120.05481 * 359.97438 * 13 8 7 15 15 C 1.50698 * 109.46754 * 240.00104 * 2 1 3 16 16 O 1.21294 * 119.99833 * 259.50212 * 15 2 1 17 17 N 1.34774 * 120.00137 * 79.51305 * 15 2 1 18 18 C 1.37104 * 120.00020 * 185.06000 * 17 15 2 19 19 H 1.07999 * 119.99649 * 346.09735 * 18 17 15 20 20 C 1.38947 * 120.00132 * 166.10312 * 18 17 15 21 21 N 1.31409 * 120.00095 * 359.41402 * 20 18 17 22 22 Si 1.86802 * 120.00066 * 179.41732 * 20 18 17 23 23 H 1.48501 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47260 * 119.99859 * 22 20 18 25 25 H 1.48494 * 109.47079 * 240.00049 * 22 20 18 26 26 C 1.46500 * 120.00308 * 5.05298 * 17 15 2 27 27 C 1.47200 * 109.47100 * 264.52589 * 26 17 15 28 28 N 4.22594 * 56.30275 * 296.74042 * 2 1 3 29 29 H 1.09004 * 109.47133 * 173.61043 * 1 2 3 30 30 H 1.09001 * 109.47452 * 293.61148 * 1 2 3 31 31 H 1.08998 * 109.47651 * 53.61009 * 1 2 3 32 32 H 1.08000 * 120.02564 * 0.25614 * 6 5 4 33 33 H 1.08004 * 119.96597 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46969 * 60.00547 * 10 9 8 35 35 H 1.09003 * 109.46649 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47783 * 300.00059 * 10 9 8 37 37 H 1.09005 * 109.47205 * 59.99968 * 11 9 8 38 38 H 1.09008 * 109.46903 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47555 * 299.99723 * 11 9 8 40 40 H 1.09008 * 109.47324 * 60.00273 * 12 9 8 41 41 H 1.09000 * 109.47138 * 179.97438 * 12 9 8 42 42 H 1.09000 * 109.47746 * 300.00189 * 12 9 8 43 43 H 1.07996 * 119.97532 * 179.97438 * 13 8 7 44 44 H 1.07997 * 120.03153 * 179.97438 * 14 13 8 45 45 H 0.97000 * 120.00170 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.46667 * 24.52396 * 26 17 15 47 47 H 1.08995 * 109.47192 * 144.52769 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0712 0.0514 2.3144 6 6 1.6762 1.3812 2.3195 7 6 1.7490 2.1177 3.4860 8 6 2.2142 1.5303 4.6479 9 6 2.2920 2.3359 5.9192 10 6 3.7413 2.3799 6.4072 11 6 1.8004 3.7598 5.6514 12 6 1.4129 1.6858 6.9895 13 6 2.6085 0.2051 4.6455 14 6 2.5379 -0.5357 3.4816 15 6 2.0323 -0.7104 -1.2305 16 8 2.4148 -1.8589 -1.1540 17 7 2.0566 -0.0695 -2.4159 18 6 2.4147 -0.7458 -3.5535 19 1 2.8887 -1.7134 -3.4799 20 6 2.1679 -0.1861 -4.8011 21 7 1.5808 0.9861 -4.8910 22 14 2.6705 -1.1002 -6.3508 23 1 3.3090 -2.3887 -5.9803 24 1 1.4686 -1.3636 -7.1820 25 1 3.6343 -0.2745 -7.1218 26 6 1.7002 1.3496 -2.4889 27 6 0.2808 1.4808 -2.8564 28 7 -0.8145 1.5820 -3.1399 29 1 -0.3633 -1.0213 -0.1144 30 1 -0.3634 0.4116 0.9416 31 1 -0.3634 0.6097 -0.8272 32 1 1.3127 1.8405 1.4121 33 1 1.4419 3.1531 3.4903 34 1 4.3675 2.8431 5.6447 35 1 3.7976 2.9630 7.3264 36 1 4.0915 1.3655 6.5980 37 1 0.7678 3.7284 5.3038 38 1 1.8562 4.3424 6.5710 39 1 2.4265 4.2230 4.8889 40 1 1.7630 0.6713 7.1803 41 1 1.4695 2.2682 7.9091 42 1 0.3803 1.6544 6.6419 43 1 2.9719 -0.2514 5.5543 44 1 2.8464 -1.5707 3.4800 45 1 1.4082 1.3766 -5.7619 46 1 1.8690 1.8169 -1.5187 47 1 2.3171 1.8409 -3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126648675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:16 Heat of formation + Delta-G solvation = -8.455212 kcal Electronic energy + Delta-G solvation = -28342.711714 eV Core-core repulsion = 24491.773297 eV Total energy + Delta-G solvation = -3850.938417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48676 -39.30790 -38.06209 -35.95211 -35.47110 -34.32783 -32.36970 -31.40240 -30.70860 -28.87001 -27.59052 -27.53953 -27.43703 -25.46156 -23.89260 -22.58735 -22.20839 -19.62829 -19.10115 -18.32959 -17.91920 -16.56538 -16.36512 -15.94446 -15.47927 -15.20675 -14.87031 -14.60200 -14.42080 -14.23625 -13.86737 -13.59309 -13.44723 -13.34134 -13.19586 -12.91071 -12.71823 -12.60702 -12.20201 -12.13369 -12.04837 -11.89506 -11.79613 -11.66618 -11.56973 -11.30128 -11.25353 -11.18984 -11.04537 -10.79587 -10.70436 -10.55307 -10.47263 -10.41485 -10.23194 -9.38086 -8.93724 -8.66199 -8.23998 -7.91259 -6.53551 -4.14275 1.39968 1.50531 3.01130 3.10960 3.19239 3.27783 3.45121 3.77886 3.80999 3.95915 4.11075 4.47509 4.57268 4.66795 4.81839 4.83042 4.88033 4.98673 5.06363 5.13382 5.16860 5.26847 5.34207 5.38630 5.41056 5.51373 5.55611 5.57225 5.63139 5.67102 5.71548 5.77529 5.86035 5.88849 5.92000 6.00691 6.05670 6.09768 6.11307 6.36053 6.41610 6.48444 6.65867 6.68472 6.84958 7.35738 7.55523 7.78857 8.17853 8.74987 8.87971 9.05470 9.56034 10.45354 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002701 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.112450 B =10365.128820 C =10867.898273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.283 6.283 5 C 0.136 3.864 6 C -0.212 4.212 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.024 4.024 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.076 4.076 14 C -0.152 4.152 15 C 0.462 3.538 16 O -0.552 6.552 17 N -0.441 5.441 18 C -0.298 4.298 19 H 0.113 0.887 20 C 0.028 3.972 21 N -0.895 5.895 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.278 1.278 26 C 0.217 3.783 27 C 0.257 3.743 28 N -0.483 5.483 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.275 0.725 46 H 0.072 0.928 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 7.149 19.084 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.195 6.195 5 C 0.090 3.910 6 C -0.231 4.231 7 C -0.097 4.097 8 C -0.120 4.120 9 C -0.024 4.024 10 C -0.195 4.195 11 C -0.201 4.201 12 C -0.195 4.195 13 C -0.094 4.094 14 C -0.171 4.171 15 C 0.248 3.752 16 O -0.432 6.432 17 N -0.163 5.163 18 C -0.424 4.424 19 H 0.130 0.870 20 C -0.173 4.173 21 N -0.536 5.536 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.204 1.204 26 C 0.090 3.910 27 C -0.060 4.060 28 N -0.165 5.165 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.136 6.599 18.479 19.655 hybrid contribution 0.387 -0.081 -1.025 1.098 sum 1.523 6.518 17.455 18.694 Atomic orbital electron populations 1.22302 0.93386 1.04305 1.03065 1.22347 0.95340 0.96631 0.84563 0.89640 1.86250 1.80021 1.38141 1.15072 1.19190 0.94576 0.90317 0.86924 1.21347 1.07717 0.94091 0.99923 1.20927 0.97658 0.99593 0.91518 1.19618 1.03191 0.94421 0.94757 1.19393 0.95904 0.94505 0.92561 1.21892 0.94981 1.01924 1.00749 1.21963 1.01282 0.95271 1.01620 1.21895 0.99621 1.00463 0.97555 1.20704 0.98334 0.93380 0.96977 1.20418 1.05016 1.01090 0.90566 1.19505 0.84642 0.87258 0.83759 1.90584 1.50208 1.17526 1.84890 1.43577 1.58782 1.07486 1.06498 1.19925 1.36503 1.04152 0.81859 0.86976 1.25325 0.95957 0.96340 0.99646 1.69607 1.41889 1.16385 1.25756 0.85623 0.78221 0.79422 0.80130 1.19063 1.20669 1.20409 1.19136 0.85821 0.84983 1.01101 1.29054 0.94245 0.92472 0.90214 1.80914 1.14326 1.08608 1.12630 0.90930 0.91399 0.90425 0.85240 0.85596 0.92456 0.92645 0.92485 0.92283 0.92592 0.92218 0.92500 0.92642 0.92520 0.85856 0.85244 0.91402 0.91028 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.07 37.16 0.34 -2.58 16 2 C 0.07 1.29 1.93 -27.88 -0.05 1.24 16 3 H 0.09 1.32 4.23 -51.93 -0.22 1.10 16 4 O -0.28 -5.29 9.42 -38.55 -0.36 -5.65 16 5 C 0.14 2.10 6.52 -39.22 -0.26 1.85 16 6 C -0.21 -2.82 8.22 -39.43 -0.32 -3.14 16 7 C -0.08 -0.90 8.97 -39.61 -0.36 -1.25 16 8 C -0.12 -1.28 4.76 -104.60 -0.50 -1.78 16 9 C -0.02 -0.20 0.85 -155.66 -0.13 -0.33 16 10 C -0.14 -1.05 8.29 37.15 0.31 -0.74 16 11 C -0.14 -1.07 7.13 37.16 0.26 -0.81 16 12 C -0.14 -1.04 8.29 37.16 0.31 -0.74 16 13 C -0.08 -0.85 8.70 -39.60 -0.34 -1.20 16 14 C -0.15 -2.08 9.99 -39.43 -0.39 -2.47 16 15 C 0.46 10.58 6.88 -10.99 -0.08 10.51 16 16 O -0.55 -14.81 16.23 -13.56 -0.22 -15.03 16 17 N -0.44 -10.16 2.60 -117.94 -0.31 -10.47 16 18 C -0.30 -7.53 9.47 -14.93 -0.14 -7.67 16 19 H 0.11 3.00 7.23 -52.49 -0.38 2.62 16 20 C 0.03 0.68 5.36 -17.47 -0.09 0.59 16 21 N -0.89 -21.50 8.06 55.50 0.45 -21.05 16 22 Si 0.94 19.76 29.55 -169.99 -5.02 14.73 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 C 0.22 4.24 4.97 -6.83 -0.03 4.20 16 27 C 0.26 5.53 10.83 -20.76 -0.22 5.31 16 28 N -0.48 -11.15 18.43 42.15 0.78 -10.37 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 0.98 7.09 -51.93 -0.37 0.61 16 31 H 0.08 1.37 5.28 -51.93 -0.27 1.09 16 32 H 0.13 1.60 5.61 -52.49 -0.29 1.31 16 33 H 0.13 1.18 5.89 -52.48 -0.31 0.87 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 37 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 38 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 40 H 0.06 0.42 7.38 -51.92 -0.38 0.04 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.12 1.11 7.09 -52.49 -0.37 0.74 16 44 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 46 H 0.07 1.09 5.80 -51.93 -0.30 0.79 16 47 H 0.15 2.96 6.28 -51.93 -0.33 2.63 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -30.06 375.33 -7.23 -37.28 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.48 Total: 3.92 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.71 Total: 0.98 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.92 Total: -41.89 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.58 Total: -20.69 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.06 -7.23 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126648675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.829 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds