Wall clock time and date at job start Tue Mar 31 2020 16:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46815 * 2 1 4 4 O 1.42896 * 109.47093 * 120.00084 * 2 1 3 5 5 C 1.35905 * 116.99703 * 277.08079 * 4 2 1 6 6 C 1.38732 * 120.05765 * 0.42103 * 5 4 2 7 7 C 1.38141 * 119.94187 * 180.29789 * 6 5 4 8 8 C 1.38257 * 120.05945 * 359.96009 * 7 6 5 9 9 C 1.50707 * 119.94579 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46997 * 240.01712 * 9 8 7 11 11 C 1.52995 * 109.46853 * 0.02562 * 9 8 7 12 12 C 1.53001 * 109.46953 * 120.01788 * 9 8 7 13 13 C 1.38264 * 120.11319 * 0.03803 * 8 7 6 14 14 C 1.38149 * 120.05481 * 359.97438 * 13 8 7 15 15 C 1.50698 * 109.46754 * 240.00104 * 2 1 3 16 16 O 1.21294 * 119.99833 * 259.50212 * 15 2 1 17 17 N 1.34774 * 120.00137 * 79.51305 * 15 2 1 18 18 C 1.37104 * 120.00020 * 185.06000 * 17 15 2 19 19 H 1.07999 * 119.99649 * 346.09735 * 18 17 15 20 20 C 1.38947 * 120.00132 * 166.10312 * 18 17 15 21 21 N 1.31409 * 120.00095 * 359.41402 * 20 18 17 22 22 Si 1.86802 * 120.00066 * 179.41732 * 20 18 17 23 23 H 1.48501 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47260 * 119.99859 * 22 20 18 25 25 H 1.48494 * 109.47079 * 240.00049 * 22 20 18 26 26 C 1.46500 * 120.00308 * 5.05298 * 17 15 2 27 27 C 1.47200 * 109.47100 * 264.52589 * 26 17 15 28 28 N 4.22594 * 56.30275 * 296.74042 * 2 1 3 29 29 H 1.09004 * 109.47133 * 173.61043 * 1 2 3 30 30 H 1.09001 * 109.47452 * 293.61148 * 1 2 3 31 31 H 1.08998 * 109.47651 * 53.61009 * 1 2 3 32 32 H 1.08000 * 120.02564 * 0.25614 * 6 5 4 33 33 H 1.08004 * 119.96597 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46969 * 60.00547 * 10 9 8 35 35 H 1.09003 * 109.46649 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47783 * 300.00059 * 10 9 8 37 37 H 1.09005 * 109.47205 * 59.99968 * 11 9 8 38 38 H 1.09008 * 109.46903 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47555 * 299.99723 * 11 9 8 40 40 H 1.09008 * 109.47324 * 60.00273 * 12 9 8 41 41 H 1.09000 * 109.47138 * 179.97438 * 12 9 8 42 42 H 1.09000 * 109.47746 * 300.00189 * 12 9 8 43 43 H 1.07996 * 119.97532 * 179.97438 * 13 8 7 44 44 H 1.07997 * 120.03153 * 179.97438 * 14 13 8 45 45 H 0.97000 * 120.00170 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.46667 * 24.52396 * 26 17 15 47 47 H 1.08995 * 109.47192 * 144.52769 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0712 0.0514 2.3144 6 6 1.6762 1.3812 2.3195 7 6 1.7490 2.1177 3.4860 8 6 2.2142 1.5303 4.6479 9 6 2.2920 2.3359 5.9192 10 6 3.7413 2.3799 6.4072 11 6 1.8004 3.7598 5.6514 12 6 1.4129 1.6858 6.9895 13 6 2.6085 0.2051 4.6455 14 6 2.5379 -0.5357 3.4816 15 6 2.0323 -0.7104 -1.2305 16 8 2.4148 -1.8589 -1.1540 17 7 2.0566 -0.0695 -2.4159 18 6 2.4147 -0.7458 -3.5535 19 1 2.8887 -1.7134 -3.4799 20 6 2.1679 -0.1861 -4.8011 21 7 1.5808 0.9861 -4.8910 22 14 2.6705 -1.1002 -6.3508 23 1 3.3090 -2.3887 -5.9803 24 1 1.4686 -1.3636 -7.1820 25 1 3.6343 -0.2745 -7.1218 26 6 1.7002 1.3496 -2.4889 27 6 0.2808 1.4808 -2.8564 28 7 -0.8145 1.5820 -3.1399 29 1 -0.3633 -1.0213 -0.1144 30 1 -0.3634 0.4116 0.9416 31 1 -0.3634 0.6097 -0.8272 32 1 1.3127 1.8405 1.4121 33 1 1.4419 3.1531 3.4903 34 1 4.3675 2.8431 5.6447 35 1 3.7976 2.9630 7.3264 36 1 4.0915 1.3655 6.5980 37 1 0.7678 3.7284 5.3038 38 1 1.8562 4.3424 6.5710 39 1 2.4265 4.2230 4.8889 40 1 1.7630 0.6713 7.1803 41 1 1.4695 2.2682 7.9091 42 1 0.3803 1.6544 6.6419 43 1 2.9719 -0.2514 5.5543 44 1 2.8464 -1.5707 3.4800 45 1 1.4082 1.3766 -5.7619 46 1 1.8690 1.8169 -1.5187 47 1 2.3171 1.8409 -3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126648675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:15 Heat of formation + Delta-G solvation = -22.929400 kcal Electronic energy + Delta-G solvation = -28343.339362 eV Core-core repulsion = 24491.773297 eV Total energy + Delta-G solvation = -3851.566065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71791 -40.65429 -39.30082 -37.69093 -36.46476 -36.11308 -34.08427 -32.75835 -31.83627 -29.84649 -29.29416 -28.15828 -28.00263 -27.20156 -25.30280 -23.52359 -23.37129 -21.05027 -20.01528 -19.95584 -19.34862 -18.13758 -18.01380 -17.20487 -16.63270 -16.48917 -16.25580 -15.83269 -15.59983 -15.26279 -15.04932 -15.01659 -14.86225 -14.62618 -14.18146 -14.15432 -13.79975 -13.65968 -13.52925 -13.41353 -13.26652 -13.18173 -12.99273 -12.96054 -12.76252 -12.68272 -12.45947 -12.37478 -12.24749 -12.12827 -12.08130 -11.84523 -11.56260 -11.51706 -11.25116 -11.21314 -10.47141 -10.10336 -9.88176 -8.96121 -8.40001 -6.07660 0.44996 0.52019 1.30967 1.42224 1.53150 1.71263 1.74557 2.18443 2.24288 2.39888 2.84508 2.95668 3.08032 3.48963 3.62931 3.74628 3.77962 3.88128 3.94211 4.02223 4.19771 4.22227 4.36787 4.46430 4.47843 4.51108 4.55670 4.64219 4.77395 4.87705 4.88770 4.98222 4.99649 5.05641 5.08163 5.12279 5.12826 5.17674 5.29913 5.39772 5.42485 5.47952 5.53812 5.58420 5.79153 5.82495 5.95139 6.29370 6.51133 6.99860 7.04437 7.21615 7.74523 8.54850 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002701 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.112450 B =10365.128820 C =10867.898273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 H 0.117 0.883 4 O -0.313 6.313 5 C 0.102 3.898 6 C -0.215 4.215 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.024 4.024 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.074 4.074 14 C -0.166 4.166 15 C 0.451 3.549 16 O -0.604 6.604 17 N -0.448 5.448 18 C -0.328 4.328 19 H 0.085 0.915 20 C 0.005 3.995 21 N -0.897 5.897 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.262 1.262 26 C 0.217 3.783 27 C 0.269 3.731 28 N -0.512 5.512 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.146 0.854 44 H 0.124 0.876 45 H 0.277 0.723 46 H 0.122 0.878 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 9.508 20.847 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.134 0.866 4 O -0.226 6.226 5 C 0.057 3.943 6 C -0.233 4.233 7 C -0.098 4.098 8 C -0.112 4.112 9 C -0.024 4.024 10 C -0.195 4.195 11 C -0.202 4.202 12 C -0.195 4.195 13 C -0.091 4.091 14 C -0.185 4.185 15 C 0.240 3.760 16 O -0.488 6.488 17 N -0.169 5.169 18 C -0.456 4.456 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.537 5.537 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.187 1.187 26 C 0.091 3.909 27 C -0.048 4.048 28 N -0.193 5.193 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.163 0.837 44 H 0.142 0.858 45 H 0.087 0.913 46 H 0.139 0.861 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.191 9.008 20.253 22.198 hybrid contribution 0.390 -0.788 -1.452 1.698 sum 1.581 8.220 18.801 20.580 Atomic orbital electron populations 1.22221 0.92482 1.03068 1.04267 1.22135 0.95666 0.97006 0.82752 0.86626 1.86198 1.80971 1.39490 1.15984 1.19463 0.97150 0.91439 0.86225 1.21482 1.07511 0.93237 1.01086 1.21237 0.97054 1.00551 0.90972 1.20007 1.01191 0.94308 0.95739 1.19468 0.96685 0.94754 0.91469 1.21894 0.94178 1.02234 1.01218 1.21977 1.01200 0.94668 1.02382 1.21895 0.98989 1.00755 0.97859 1.20951 0.97705 0.93644 0.96831 1.20594 1.05442 1.01351 0.91096 1.20374 0.83538 0.86991 0.85093 1.90538 1.52350 1.19960 1.85935 1.43706 1.58311 1.08767 1.06084 1.19782 1.38259 1.04053 0.83458 0.89707 1.25886 0.95524 0.96912 1.01213 1.69703 1.41261 1.16495 1.26274 0.84854 0.77842 0.78366 0.77256 1.19883 1.21122 1.18681 1.19378 0.84533 0.83274 1.03754 1.29366 0.94453 0.91588 0.89366 1.80917 1.15248 1.09523 1.13642 0.93058 0.88573 0.90960 0.84333 0.83287 0.93094 0.91161 0.92437 0.92262 0.91296 0.92190 0.92433 0.91171 0.93127 0.83671 0.85773 0.91252 0.86065 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.07 71.98 0.65 -4.75 16 2 C 0.08 3.02 1.93 29.85 0.06 3.08 16 3 H 0.12 3.35 4.23 -2.39 -0.01 3.34 16 4 O -0.31 -11.88 9.42 -74.21 -0.70 -12.58 16 5 C 0.10 3.10 6.52 22.51 0.15 3.25 16 6 C -0.21 -5.28 8.22 22.36 0.18 -5.10 16 7 C -0.08 -1.61 8.97 22.25 0.20 -1.41 16 8 C -0.11 -2.11 4.76 -19.85 -0.09 -2.21 16 9 C -0.02 -0.32 0.85 -52.93 -0.05 -0.37 16 10 C -0.14 -1.68 8.29 71.98 0.60 -1.09 16 11 C -0.15 -1.66 7.13 71.98 0.51 -1.15 16 12 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 13 C -0.07 -1.52 8.70 22.25 0.19 -1.33 16 14 C -0.17 -4.48 9.99 22.37 0.22 -4.26 16 15 C 0.45 21.20 6.88 87.66 0.60 21.80 16 16 O -0.60 -34.04 16.23 15.20 0.25 -33.79 16 17 N -0.45 -20.85 2.60 -645.43 -1.68 -22.53 16 18 C -0.33 -17.05 9.47 84.04 0.80 -16.26 16 19 H 0.09 4.79 7.23 -2.91 -0.02 4.77 16 20 C 0.01 0.24 5.36 84.93 0.45 0.70 16 21 N -0.90 -42.46 8.06 21.66 0.17 -42.29 16 22 Si 0.99 40.55 29.55 68.60 2.03 42.58 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 C 0.22 8.22 4.97 84.57 0.42 8.64 16 27 C 0.27 11.29 10.83 89.44 0.97 12.26 16 28 N -0.51 -23.18 18.43 20.01 0.37 -22.81 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.10 2.62 7.09 -2.39 -0.02 2.60 16 31 H 0.07 2.47 5.28 -2.39 -0.01 2.46 16 32 H 0.14 3.04 5.61 -2.91 -0.02 3.02 16 33 H 0.15 2.27 5.89 -2.91 -0.02 2.25 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.69 7.38 -2.39 -0.02 0.68 16 37 H 0.06 0.68 7.51 -2.38 -0.02 0.67 16 38 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 40 H 0.06 0.69 7.38 -2.38 -0.02 0.67 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.15 2.30 7.09 -2.91 -0.02 2.28 16 44 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.28 12.71 8.31 -92.71 -0.77 11.94 16 46 H 0.12 3.35 5.80 -2.39 -0.01 3.34 16 47 H 0.14 5.61 6.28 -2.39 -0.01 5.59 16 Total: -1.00 -67.09 375.33 7.90 -59.18 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.00 Total: 21.50 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.47 Total: 10.74 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.13 Total: -87.63 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.45 Total: -46.37 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -67.09 7.90 -59.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126648675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.252 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds