Wall clock time and date at job start Tue Mar 31 2020 17:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.37094 * 120.00184 * 95.22160 * 3 2 1 5 5 H 1.07995 * 119.99962 * 170.94540 * 4 3 2 6 6 C 1.38952 * 119.99667 * 350.94639 * 4 3 2 7 7 N 1.31407 * 120.00163 * 333.99589 * 6 4 3 8 8 Si 1.86802 * 119.99946 * 153.99611 * 6 4 3 9 9 H 1.48507 * 109.47091 * 94.99140 * 8 6 4 10 10 H 1.48493 * 109.47204 * 214.99033 * 8 6 4 11 11 H 1.48499 * 109.47152 * 334.99428 * 8 6 4 12 12 C 1.34780 * 119.99888 * 275.22008 * 3 2 1 13 13 O 1.21295 * 119.99816 * 184.99724 * 12 3 2 14 14 C 1.50703 * 120.00118 * 5.00435 * 12 3 2 15 15 H 1.08997 * 110.32583 * 28.51266 * 14 12 3 16 16 C 1.55388 * 110.33871 * 266.20296 * 14 12 3 17 17 C 1.55154 * 101.36584 * 204.16620 * 16 14 12 18 18 C 1.54322 * 103.10305 * 35.49494 * 17 16 14 19 19 N 1.47020 * 107.26840 * 337.72053 * 18 17 16 20 20 C 1.34783 * 125.64752 * 178.90858 * 19 18 17 21 21 O 1.21281 * 119.99636 * 175.36018 * 20 19 18 22 22 C 1.50696 * 119.99763 * 355.35500 * 20 19 18 23 23 C 1.50704 * 109.46772 * 180.02562 * 22 20 19 24 24 C 1.38239 * 119.99956 * 269.72593 * 23 22 20 25 25 C 1.38236 * 119.99845 * 179.76813 * 24 23 22 26 26 C 1.38234 * 119.99897 * 0.48500 * 25 24 23 27 27 C 1.38237 * 119.99898 * 359.79707 * 26 25 24 28 28 C 1.38232 * 119.99840 * 90.00390 * 23 22 20 29 29 H 1.09002 * 109.46986 * 306.28937 * 1 2 3 30 30 H 1.09001 * 109.47263 * 66.28062 * 1 2 3 31 31 H 1.08997 * 109.47282 * 186.28658 * 1 2 3 32 32 H 1.09004 * 109.46890 * 240.00075 * 2 1 3 33 33 H 1.08993 * 109.47237 * 120.00269 * 2 1 3 34 34 H 0.97002 * 120.00116 * 180.02562 * 7 6 4 35 35 H 1.09003 * 111.18925 * 86.12788 * 16 14 12 36 36 H 1.09000 * 111.02424 * 322.13337 * 16 14 12 37 37 H 1.09002 * 110.71920 * 277.04047 * 17 16 14 38 38 H 1.08998 * 110.72163 * 153.94748 * 17 16 14 39 39 H 1.09000 * 109.88155 * 97.13606 * 18 17 16 40 40 H 1.09006 * 109.88469 * 218.30516 * 18 17 16 41 41 H 1.08995 * 109.47353 * 300.00425 * 22 20 19 42 42 H 1.08997 * 109.46941 * 60.00973 * 22 20 19 43 43 H 1.08002 * 119.99725 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99683 * 180.25763 * 25 24 23 45 45 H 1.07995 * 120.00149 * 179.76465 * 26 25 24 46 46 H 1.08005 * 119.99844 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00022 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3487 1.9915 1.1823 5 1 2.8441 2.9511 1.1747 6 6 2.0463 1.3753 2.3904 7 7 1.0468 0.5252 2.4623 8 14 3.0605 1.7553 3.9124 9 1 2.3936 2.8253 4.6972 10 1 3.1803 0.5320 4.7456 11 1 4.4137 2.2110 3.5045 12 6 2.1429 2.0520 -1.1624 13 8 2.6318 3.1619 -1.1727 14 6 1.6745 1.4229 -2.4493 15 1 0.8576 0.7278 -2.2555 16 6 2.8520 0.6938 -3.1539 17 6 2.3742 0.6972 -4.6300 18 6 1.6433 2.0503 -4.7581 19 7 1.2482 2.4628 -3.4033 20 6 0.6036 3.6031 -3.0861 21 8 0.2519 3.8029 -1.9427 22 6 0.3200 4.6299 -4.1521 23 6 -0.4043 5.8016 -3.5408 24 6 -1.7859 5.8130 -3.4956 25 6 -2.4501 6.8856 -2.9305 26 6 -1.7330 7.9514 -2.4198 27 6 -0.3516 7.9426 -2.4704 28 6 0.3128 6.8676 -3.0306 29 1 -0.3633 0.6083 0.8284 30 1 -0.3634 0.4134 -0.9408 31 1 -0.3634 -1.0214 0.1125 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.8354 0.0953 3.3058 35 1 2.9639 -0.3247 -2.7818 36 1 3.7809 1.2530 -3.0426 37 1 1.6894 -0.1302 -4.8157 38 1 3.2244 0.6523 -5.3106 39 1 2.3124 2.7935 -5.1915 40 1 0.7580 1.9357 -5.3836 41 1 1.2593 4.9707 -4.5874 42 1 -0.3004 4.1844 -4.9297 43 1 -2.3462 4.9823 -3.8987 44 1 -3.5294 6.8926 -2.8915 45 1 -2.2520 8.7911 -1.9818 46 1 0.2086 8.7755 -2.0717 47 1 1.3920 6.8605 -3.0696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127970090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:36 Heat of formation + Delta-G solvation = -19.665246 kcal Electronic energy + Delta-G solvation = -29469.825982 eV Core-core repulsion = 25618.401461 eV Total energy + Delta-G solvation = -3851.424521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.14319 -39.04903 -37.75610 -36.63978 -34.84508 -32.72433 -31.77761 -31.22307 -30.71393 -29.47174 -29.00128 -27.30552 -24.95597 -23.44474 -22.41610 -22.17520 -21.49182 -21.11486 -19.80054 -17.95661 -17.08784 -16.61551 -16.52521 -16.51166 -15.34214 -15.20738 -14.95146 -14.64832 -14.22838 -13.93747 -13.73375 -13.64881 -13.25542 -13.19637 -12.95432 -12.75264 -12.65628 -12.40232 -12.21704 -12.05264 -11.88195 -11.57070 -11.48800 -11.24530 -11.00993 -10.96432 -10.85050 -10.83089 -10.71746 -10.56647 -10.27621 -10.02137 -9.76737 -9.27312 -8.77161 -8.71841 -8.53430 -8.47317 -7.91941 -7.60346 -6.22290 -3.61290 1.50456 1.60400 3.14537 3.23912 3.32767 3.35836 3.40772 3.94092 4.07120 4.24733 4.64723 4.75878 4.82974 4.89541 4.98210 5.04933 5.14760 5.21468 5.24778 5.26530 5.39432 5.49800 5.53113 5.58168 5.66769 5.68109 5.79669 5.80802 5.89193 6.01643 6.06361 6.15077 6.21090 6.21964 6.37564 6.59836 6.62721 6.65589 6.67132 6.72264 6.77549 6.86322 7.17488 7.31675 7.60727 7.87557 7.98294 8.23141 8.64661 8.80338 9.34354 9.59261 10.15600 10.78773 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.004488 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.938378 B = 6237.785676 C = 7895.212504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 N -0.442 5.442 4 C -0.297 4.297 5 H 0.101 0.899 6 C 0.028 3.972 7 N -0.868 5.868 8 Si 0.913 3.087 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.457 3.543 13 O -0.575 6.575 14 C 0.122 3.878 15 H 0.087 0.913 16 C -0.122 4.122 17 C -0.130 4.130 18 C 0.104 3.896 19 N -0.608 5.608 20 C 0.527 3.473 21 O -0.492 6.492 22 C -0.094 4.094 23 C -0.060 4.060 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.099 4.099 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.097 0.903 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 2.075 -16.507 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 N -0.162 5.162 4 C -0.424 4.424 5 H 0.119 0.881 6 C -0.174 4.174 7 N -0.508 5.508 8 Si 0.739 3.261 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.244 3.756 13 O -0.458 6.458 14 C 0.015 3.985 15 H 0.105 0.895 16 C -0.161 4.161 17 C -0.168 4.168 18 C -0.020 4.020 19 N -0.346 5.346 20 C 0.314 3.686 21 O -0.363 6.363 22 C -0.134 4.134 23 C -0.061 4.061 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.117 4.117 29 H 0.113 0.887 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.950 2.712 -15.672 16.176 hybrid contribution 0.318 -0.122 0.838 0.905 sum -2.632 2.590 -14.834 15.287 Atomic orbital electron populations 1.22137 0.96678 1.00409 1.01166 1.21379 0.94562 0.83859 1.00102 1.43691 1.56282 1.11100 1.05090 1.19623 1.35458 1.05499 0.81867 0.88131 1.25114 0.96021 0.97508 0.98729 1.70171 1.23760 1.30368 1.26484 0.86136 0.80877 0.77704 0.81337 1.20681 1.20897 1.19580 1.19562 0.85191 0.86429 0.84453 1.90491 1.48753 1.20356 1.86176 1.21987 0.96852 0.89297 0.90377 0.89520 1.22826 0.98099 1.01011 0.94122 1.22614 1.00288 0.96537 0.97328 1.21961 0.98728 0.96622 0.84650 1.48204 1.58862 1.20311 1.07219 1.19940 0.78113 0.80812 0.89686 1.90839 1.49218 1.75611 1.20647 1.20629 1.01797 0.93546 0.97449 1.19299 0.93542 0.94316 0.98931 1.20939 0.93657 0.98035 0.99844 1.21040 0.99593 0.94259 0.99113 1.21087 0.94312 0.98662 1.00167 1.21082 0.94538 0.98561 0.99566 1.21010 0.99827 0.93430 0.97454 0.88729 0.96114 0.94481 0.95291 0.88507 0.92579 0.89627 0.90141 0.90537 0.90081 0.91720 0.91679 0.88413 0.88697 0.86462 0.86325 0.86416 0.86232 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.38 37.16 0.35 -2.91 16 2 C 0.12 2.87 4.93 -4.04 -0.02 2.85 16 3 N -0.44 -11.80 2.64 -114.81 -0.30 -12.10 16 4 C -0.30 -8.67 9.42 -14.93 -0.14 -8.81 16 5 H 0.10 3.16 7.31 -52.49 -0.38 2.78 16 6 C 0.03 0.77 4.86 -17.47 -0.08 0.68 16 7 N -0.87 -23.20 8.65 55.50 0.48 -22.72 16 8 Si 0.91 21.39 29.63 -169.99 -5.04 16.35 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.46 11.73 5.48 -10.98 -0.06 11.67 16 13 O -0.57 -16.87 14.66 -14.92 -0.22 -17.09 16 14 C 0.12 2.37 2.60 -67.31 -0.18 2.19 16 15 H 0.09 1.69 5.07 -51.93 -0.26 1.43 16 16 C -0.12 -1.81 6.34 -24.32 -0.15 -1.96 16 17 C -0.13 -1.36 6.94 -24.90 -0.17 -1.54 16 18 C 0.10 1.22 6.49 -3.07 -0.02 1.20 16 19 N -0.61 -10.73 3.12 -164.06 -0.51 -11.24 16 20 C 0.53 10.35 7.05 -10.98 -0.08 10.28 16 21 O -0.49 -12.55 14.20 -14.91 -0.21 -12.76 16 22 C -0.09 -1.34 5.03 -29.03 -0.15 -1.48 16 23 C -0.06 -0.94 4.37 -104.62 -0.46 -1.40 16 24 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 25 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 26 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 27 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 28 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 29 H 0.09 2.48 6.39 -51.93 -0.33 2.15 16 30 H 0.02 0.44 6.37 -51.93 -0.33 0.11 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.56 6.23 -51.93 -0.32 0.24 16 33 H 0.10 2.37 6.00 -51.93 -0.31 2.06 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.09 1.14 7.47 -51.93 -0.39 0.75 16 36 H 0.08 1.30 8.06 -51.93 -0.42 0.89 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 42 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -36.69 375.00 -10.22 -46.91 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.95 Total: 6.26 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.12 Total: 0.75 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.33 Total: -46.06 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.43 Total: -29.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.69 -10.22 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127970090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.247 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds