Wall clock time and date at job start Tue Mar 31 2020 17:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.37094 * 120.00184 * 95.22160 * 3 2 1 5 5 H 1.07995 * 119.99962 * 170.94540 * 4 3 2 6 6 C 1.38952 * 119.99667 * 350.94639 * 4 3 2 7 7 N 1.31407 * 120.00163 * 333.99589 * 6 4 3 8 8 Si 1.86802 * 119.99946 * 153.99611 * 6 4 3 9 9 H 1.48507 * 109.47091 * 94.99140 * 8 6 4 10 10 H 1.48493 * 109.47204 * 214.99033 * 8 6 4 11 11 H 1.48499 * 109.47152 * 334.99428 * 8 6 4 12 12 C 1.34780 * 119.99888 * 275.22008 * 3 2 1 13 13 O 1.21295 * 119.99816 * 184.99724 * 12 3 2 14 14 C 1.50703 * 120.00118 * 5.00435 * 12 3 2 15 15 H 1.08997 * 110.32583 * 28.51266 * 14 12 3 16 16 C 1.55388 * 110.33871 * 266.20296 * 14 12 3 17 17 C 1.55154 * 101.36584 * 204.16620 * 16 14 12 18 18 C 1.54322 * 103.10305 * 35.49494 * 17 16 14 19 19 N 1.47020 * 107.26840 * 337.72053 * 18 17 16 20 20 C 1.34783 * 125.64752 * 178.90858 * 19 18 17 21 21 O 1.21281 * 119.99636 * 175.36018 * 20 19 18 22 22 C 1.50696 * 119.99763 * 355.35500 * 20 19 18 23 23 C 1.50704 * 109.46772 * 180.02562 * 22 20 19 24 24 C 1.38239 * 119.99956 * 269.72593 * 23 22 20 25 25 C 1.38236 * 119.99845 * 179.76813 * 24 23 22 26 26 C 1.38234 * 119.99897 * 0.48500 * 25 24 23 27 27 C 1.38237 * 119.99898 * 359.79707 * 26 25 24 28 28 C 1.38232 * 119.99840 * 90.00390 * 23 22 20 29 29 H 1.09002 * 109.46986 * 306.28937 * 1 2 3 30 30 H 1.09001 * 109.47263 * 66.28062 * 1 2 3 31 31 H 1.08997 * 109.47282 * 186.28658 * 1 2 3 32 32 H 1.09004 * 109.46890 * 240.00075 * 2 1 3 33 33 H 1.08993 * 109.47237 * 120.00269 * 2 1 3 34 34 H 0.97002 * 120.00116 * 180.02562 * 7 6 4 35 35 H 1.09003 * 111.18925 * 86.12788 * 16 14 12 36 36 H 1.09000 * 111.02424 * 322.13337 * 16 14 12 37 37 H 1.09002 * 110.71920 * 277.04047 * 17 16 14 38 38 H 1.08998 * 110.72163 * 153.94748 * 17 16 14 39 39 H 1.09000 * 109.88155 * 97.13606 * 18 17 16 40 40 H 1.09006 * 109.88469 * 218.30516 * 18 17 16 41 41 H 1.08995 * 109.47353 * 300.00425 * 22 20 19 42 42 H 1.08997 * 109.46941 * 60.00973 * 22 20 19 43 43 H 1.08002 * 119.99725 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99683 * 180.25763 * 25 24 23 45 45 H 1.07995 * 120.00149 * 179.76465 * 26 25 24 46 46 H 1.08005 * 119.99844 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00022 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3487 1.9915 1.1823 5 1 2.8441 2.9511 1.1747 6 6 2.0463 1.3753 2.3904 7 7 1.0468 0.5252 2.4623 8 14 3.0605 1.7553 3.9124 9 1 2.3936 2.8253 4.6972 10 1 3.1803 0.5320 4.7456 11 1 4.4137 2.2110 3.5045 12 6 2.1429 2.0520 -1.1624 13 8 2.6318 3.1619 -1.1727 14 6 1.6745 1.4229 -2.4493 15 1 0.8576 0.7278 -2.2555 16 6 2.8520 0.6938 -3.1539 17 6 2.3742 0.6972 -4.6300 18 6 1.6433 2.0503 -4.7581 19 7 1.2482 2.4628 -3.4033 20 6 0.6036 3.6031 -3.0861 21 8 0.2519 3.8029 -1.9427 22 6 0.3200 4.6299 -4.1521 23 6 -0.4043 5.8016 -3.5408 24 6 -1.7859 5.8130 -3.4956 25 6 -2.4501 6.8856 -2.9305 26 6 -1.7330 7.9514 -2.4198 27 6 -0.3516 7.9426 -2.4704 28 6 0.3128 6.8676 -3.0306 29 1 -0.3633 0.6083 0.8284 30 1 -0.3634 0.4134 -0.9408 31 1 -0.3634 -1.0214 0.1125 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.8354 0.0953 3.3058 35 1 2.9639 -0.3247 -2.7818 36 1 3.7809 1.2530 -3.0426 37 1 1.6894 -0.1302 -4.8157 38 1 3.2244 0.6523 -5.3106 39 1 2.3124 2.7935 -5.1915 40 1 0.7580 1.9357 -5.3836 41 1 1.2593 4.9707 -4.5874 42 1 -0.3004 4.1844 -4.9297 43 1 -2.3462 4.9823 -3.8987 44 1 -3.5294 6.8926 -2.8915 45 1 -2.2520 8.7911 -1.9818 46 1 0.2086 8.7755 -2.0717 47 1 1.3920 6.8605 -3.0696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127970090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:35 Heat of formation + Delta-G solvation = -41.997726 kcal Electronic energy + Delta-G solvation = -29470.794391 eV Core-core repulsion = 25618.401461 eV Total energy + Delta-G solvation = -3852.392930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59709 -40.33723 -39.37759 -38.04028 -36.88223 -34.00565 -33.73904 -32.45815 -31.78628 -31.30588 -30.42039 -28.45158 -26.89186 -24.84662 -23.92727 -23.49835 -22.66813 -22.39276 -21.23776 -19.52096 -18.90632 -18.39336 -17.91100 -17.67469 -16.87960 -16.50128 -16.32186 -16.00339 -15.91446 -15.52317 -15.42476 -15.10501 -14.65174 -14.43707 -14.29376 -14.11655 -14.00767 -13.85574 -13.73453 -13.42634 -13.32070 -13.12843 -12.91455 -12.79752 -12.65652 -12.44556 -12.24629 -12.13138 -12.08414 -11.98457 -11.89353 -11.76048 -11.52240 -10.84525 -10.79412 -10.29810 -9.81388 -9.66191 -9.63823 -9.47496 -8.31276 -5.79333 0.40483 0.50510 1.31370 1.37278 1.51057 1.74255 1.96280 2.25708 2.30234 2.88819 3.06176 3.13816 3.57534 3.68893 3.73651 3.90945 3.99136 4.06185 4.14091 4.21052 4.24585 4.25120 4.36482 4.42135 4.49019 4.57496 4.63294 4.75209 4.77225 4.81729 4.85631 4.91467 4.93572 5.08668 5.09694 5.13236 5.14663 5.30595 5.41184 5.42212 5.47554 5.54121 5.59301 5.66702 5.89046 6.10129 6.12041 6.57351 6.67204 7.23690 7.39867 7.57023 8.15421 8.67374 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.004488 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.938378 B = 6237.785676 C = 7895.212504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.127 3.873 3 N -0.459 5.459 4 C -0.344 4.344 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.870 5.870 8 Si 0.975 3.025 9 H -0.282 1.282 10 H -0.259 1.259 11 H -0.278 1.278 12 C 0.445 3.555 13 O -0.627 6.627 14 C 0.121 3.879 15 H 0.089 0.911 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.091 3.909 19 N -0.612 5.612 20 C 0.515 3.485 21 O -0.568 6.568 22 C -0.081 4.081 23 C -0.081 4.081 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.133 4.133 28 C -0.128 4.128 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.135 0.865 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 0.234 -18.829 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 N -0.178 5.178 4 C -0.472 4.472 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.509 5.509 8 Si 0.799 3.201 9 H -0.209 1.209 10 H -0.183 1.183 11 H -0.203 1.203 12 C 0.234 3.766 13 O -0.513 6.513 14 C 0.014 3.986 15 H 0.106 0.894 16 C -0.158 4.158 17 C -0.150 4.150 18 C -0.030 4.030 19 N -0.348 5.348 20 C 0.305 3.695 21 O -0.445 6.445 22 C -0.121 4.121 23 C -0.081 4.081 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.153 0.847 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.698 0.805 -18.053 18.445 hybrid contribution 0.517 0.474 1.588 1.736 sum -3.181 1.278 -16.464 16.817 Atomic orbital electron populations 1.21947 0.96208 1.01370 0.99511 1.21449 0.94845 0.82185 1.01093 1.43932 1.56587 1.12435 1.04828 1.19376 1.38160 1.05442 0.84242 0.92354 1.25781 0.96317 0.97192 1.00634 1.70251 1.23243 1.29886 1.27502 0.85236 0.78729 0.78228 0.77903 1.20864 1.18316 1.20321 1.20710 0.83677 0.85976 0.86229 1.90434 1.50770 1.22767 1.87347 1.21968 0.98574 0.89807 0.88260 0.89366 1.22853 0.95175 1.00733 0.97048 1.22674 1.01678 0.96517 0.94178 1.22446 1.00920 0.97782 0.81827 1.48462 1.57633 1.19434 1.09253 1.20937 0.77039 0.81752 0.89818 1.90797 1.52545 1.77299 1.23895 1.20646 1.03300 0.91733 0.96378 1.19566 0.94370 0.94640 0.99532 1.21264 0.93499 0.98976 1.00071 1.21459 1.01131 0.93822 0.98206 1.21471 0.94025 0.99601 0.99695 1.21387 0.95501 0.98761 0.99485 1.21196 0.99776 0.94737 0.98908 0.93017 0.95731 0.91334 0.91342 0.90255 0.91822 0.87819 0.92240 0.87991 0.86902 0.90195 0.88026 0.86717 0.84647 0.84768 0.83626 0.83694 0.84730 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 9.38 71.98 0.68 -5.22 16 2 C 0.13 5.86 4.93 86.38 0.43 6.29 16 3 N -0.46 -25.58 2.64 -635.53 -1.67 -27.26 16 4 C -0.34 -21.37 9.42 84.04 0.79 -20.58 16 5 H 0.06 4.01 7.31 -2.91 -0.02 3.99 16 6 C 0.00 0.17 4.86 84.93 0.41 0.58 16 7 N -0.87 -47.24 8.65 21.66 0.19 -47.05 16 8 Si 0.98 45.04 29.63 68.60 2.03 47.07 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.45 23.92 5.48 87.66 0.48 24.40 16 13 O -0.63 -39.43 14.66 16.49 0.24 -39.18 16 14 C 0.12 4.68 2.60 44.89 0.12 4.79 16 15 H 0.09 3.35 5.07 -2.39 -0.01 3.33 16 16 C -0.12 -3.28 6.34 32.15 0.20 -3.08 16 17 C -0.11 -1.84 6.94 31.78 0.22 -1.61 16 18 C 0.09 1.79 6.49 86.73 0.56 2.35 16 19 N -0.61 -20.97 3.12 -791.34 -2.47 -23.44 16 20 C 0.51 20.49 7.05 87.65 0.62 21.11 16 21 O -0.57 -30.65 14.20 16.53 0.23 -30.41 16 22 C -0.08 -2.23 5.03 29.10 0.15 -2.09 16 23 C -0.08 -2.53 4.37 -19.86 -0.09 -2.62 16 24 C -0.12 -3.41 9.70 22.27 0.22 -3.19 16 25 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 27 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 28 C -0.13 -4.20 9.70 22.27 0.22 -3.99 16 29 H 0.05 2.77 6.39 -2.39 -0.02 2.75 16 30 H 0.02 1.04 6.37 -2.39 -0.02 1.02 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.56 6.23 -2.39 -0.01 2.55 16 33 H 0.08 3.91 6.00 -2.39 -0.01 3.90 16 34 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.10 2.44 7.47 -2.39 -0.02 2.42 16 36 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.11 2.71 8.08 -2.39 -0.02 2.69 16 42 H 0.14 2.52 8.08 -2.39 -0.02 2.50 16 43 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 46 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 47 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -89.91 375.00 5.19 -84.72 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.97 Total: 28.31 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.67 Total: 7.25 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.96 Total: -97.75 kcal Atomic # 8 Polarization: -70.07 SS G_CDS: 0.48 Total: -69.60 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -89.91 5.19 -84.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127970090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.718 kcal (2) G-P(sol) polarization free energy of solvation -89.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds