Wall clock time and date at job start Tue Mar 31 2020 16:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46957 * 2 1 4 4 C 1.36087 * 126.34697 * 270.02655 * 3 2 1 5 5 C 1.50695 * 124.95629 * 0.02562 * 4 3 2 6 6 N 1.46907 * 109.47122 * 270.02523 * 5 4 3 7 7 C 1.46894 * 110.99754 * 189.99925 * 6 5 4 8 8 C 1.50703 * 109.46982 * 159.78302 * 7 6 5 9 9 H 1.07999 * 119.99895 * 357.81830 * 8 7 6 10 10 C 1.37874 * 120.00419 * 177.82199 * 8 7 6 11 11 N 1.31512 * 120.00275 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99634 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47070 * 90.00574 * 12 10 8 14 14 H 1.48505 * 109.47029 * 209.99872 * 12 10 8 15 15 H 1.48499 * 109.47297 * 330.00251 * 12 10 8 16 16 C 1.46903 * 110.99814 * 66.04391 * 6 5 4 17 17 C 1.53001 * 109.46901 * 195.42876 * 16 6 5 18 18 C 1.47200 * 109.47047 * 173.93122 * 17 16 6 19 19 N 5.01740 * 146.19071 * 200.40611 * 2 1 3 20 20 N 1.30082 * 110.08508 * 180.02562 * 4 3 2 21 21 C 1.35808 * 109.64121 * 359.97438 * 20 4 3 22 22 C 1.38077 * 126.34715 * 90.02502 * 3 2 1 23 23 C 1.38830 * 134.03855 * 0.02562 * 22 3 2 24 24 C 1.37858 * 119.87154 * 179.97438 * 23 22 3 25 25 C 1.38739 * 120.47734 * 359.97438 * 24 23 22 26 26 C 1.37838 * 120.49906 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.14067 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47230 * 60.00305 * 1 2 3 29 29 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47156 * 299.99804 * 1 2 3 31 31 H 1.09006 * 109.47020 * 240.00229 * 2 1 3 32 32 H 1.08994 * 109.47364 * 120.00159 * 2 1 3 33 33 H 1.09008 * 109.47178 * 30.02323 * 5 4 3 34 34 H 1.09000 * 109.47265 * 150.02491 * 5 4 3 35 35 H 1.08997 * 109.47419 * 279.77724 * 7 6 5 36 36 H 1.08998 * 109.47684 * 39.78748 * 7 6 5 37 37 H 0.97001 * 120.00237 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47364 * 315.42791 * 16 6 5 39 39 H 1.09001 * 109.47105 * 75.43201 * 16 6 5 40 40 H 1.09000 * 109.46987 * 293.92864 * 17 16 6 41 41 H 1.08994 * 109.46973 * 53.93211 * 17 16 6 42 42 H 1.07999 * 120.06747 * 0.02562 * 23 22 3 43 43 H 1.07998 * 119.75718 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.75193 * 179.72469 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2867 2.1418 -1.0961 5 6 2.1246 1.6867 -2.5235 6 7 3.3774 1.0762 -2.9882 7 6 3.3402 0.8360 -4.4369 8 6 4.7467 0.6905 -4.9582 9 1 5.5856 0.8037 -4.2875 10 6 4.9626 0.4130 -6.2913 11 7 6.1900 0.2866 -6.7463 12 14 3.5116 0.2166 -7.4513 13 1 3.1649 1.5359 -8.0381 14 1 3.8713 -0.7294 -8.5381 15 1 2.3453 -0.3129 -6.6999 16 6 3.6614 -0.1651 -2.2557 17 6 5.1220 -0.5641 -2.4755 18 6 5.4468 -1.7232 -1.6284 19 7 5.6990 -2.6166 -0.9734 20 7 2.7036 3.3189 -0.7318 21 6 2.7307 3.3942 0.6239 22 6 2.2916 2.1526 1.1121 23 6 2.2153 1.9336 2.4809 24 6 2.5706 2.9365 3.3576 25 6 3.0053 4.1653 2.8822 26 6 3.0878 4.4016 1.5267 27 9 3.5115 5.6011 1.0718 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3197 0.9539 -2.5821 34 1 1.8826 2.5433 -3.1527 35 1 2.7814 -0.0777 -4.6395 36 1 2.8543 1.6765 -4.9323 37 1 6.3419 0.0910 -7.6842 38 1 3.4838 -0.0080 -1.1918 39 1 3.0092 -0.9590 -2.6196 40 1 5.2736 -0.8256 -3.5228 41 1 5.7704 0.2715 -2.2121 42 1 1.8790 0.9792 2.8583 43 1 2.5110 2.7640 4.4220 44 1 3.2765 4.9442 3.5795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132814491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:38 Heat of formation + Delta-G solvation = 72.587857 kcal Electronic energy + Delta-G solvation = -28297.238467 eV Core-core repulsion = 24358.646787 eV Total energy + Delta-G solvation = -3938.591680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.75708 -42.32809 -38.17727 -37.05952 -35.95668 -35.19682 -32.73653 -31.51045 -31.07371 -29.94576 -29.34551 -28.14959 -25.81280 -24.31325 -23.21770 -22.48186 -21.93650 -20.77372 -19.64899 -17.99401 -17.83083 -17.35796 -16.37052 -16.10850 -16.05124 -15.64078 -15.46728 -15.19061 -14.94057 -14.66090 -14.43518 -14.15942 -14.03807 -13.56800 -13.30656 -13.12618 -12.86682 -12.69552 -12.63329 -12.49838 -12.31618 -12.03000 -11.83846 -11.80520 -11.70436 -11.54308 -11.35325 -11.01069 -10.88108 -10.56800 -10.34043 -10.32260 -10.05895 -9.98284 -9.35147 -8.68263 -8.51413 -8.03392 -7.78957 -6.18894 -4.17815 0.72247 1.25427 2.40463 2.66568 3.10828 3.17937 3.21329 3.25767 3.29390 3.59122 3.93793 4.15663 4.21079 4.30408 4.32663 4.42574 4.65355 4.74554 4.85376 4.90468 4.92066 5.05880 5.11753 5.17355 5.26736 5.29868 5.35033 5.45649 5.53538 5.58933 5.68564 5.72514 5.76711 5.90147 6.12182 6.23051 6.28934 6.31545 6.49142 6.63030 6.70964 6.74826 7.01260 7.34841 7.52085 7.64842 7.89616 7.95513 8.44899 8.87819 9.40523 10.92197 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.003698 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.507788 B = 7570.714876 C = 8123.424182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 N -0.486 5.486 4 C 0.309 3.691 5 C 0.128 3.872 6 N -0.515 5.515 7 C 0.159 3.841 8 C -0.521 4.521 9 H 0.095 0.905 10 C 0.074 3.926 11 N -0.891 5.891 12 Si 0.870 3.130 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.065 3.935 17 C -0.039 4.039 18 C 0.220 3.780 19 N -0.471 5.471 20 N -0.464 5.464 21 C 0.015 3.985 22 C 0.075 3.925 23 C -0.121 4.121 24 C -0.081 4.081 25 C -0.170 4.170 26 C 0.155 3.845 27 F -0.129 7.129 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.000 1.000 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.155 0.845 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 1.596 16.596 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 N -0.176 5.176 4 C 0.043 3.957 5 C -0.002 4.002 6 N -0.240 5.240 7 C 0.034 3.966 8 C -0.559 4.559 9 H 0.112 0.888 10 C -0.129 4.129 11 N -0.528 5.528 12 Si 0.697 3.303 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.065 4.065 17 C -0.078 4.078 18 C -0.096 4.096 19 N -0.150 5.150 20 N -0.182 5.182 21 C -0.105 4.105 22 C -0.035 4.035 23 C -0.142 4.142 24 C -0.101 4.101 25 C -0.192 4.192 26 C 0.134 3.866 27 F -0.108 7.108 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.172 0.828 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.737 1.131 16.903 20.609 hybrid contribution -1.504 -0.740 -0.724 1.826 sum -13.241 0.390 16.179 20.910 Atomic orbital electron populations 1.22183 0.93997 1.03290 1.03284 1.22100 0.95777 0.79702 1.05435 1.45543 1.54313 1.12884 1.04877 1.23727 0.95242 0.86131 0.90562 1.20656 0.92638 1.00527 0.86389 1.61857 1.29925 1.24824 1.07385 1.20377 0.99262 0.95469 0.81525 1.21119 0.91343 1.48657 0.94773 0.88758 1.24878 0.95344 0.94770 0.97899 1.69866 1.19531 1.48070 1.15371 0.86956 0.83458 0.78558 0.81335 1.20025 1.21225 1.19218 1.22100 0.95466 0.91397 0.97506 1.20000 0.97308 0.89936 1.00601 1.29850 0.92552 0.94433 0.92798 1.81116 1.09656 1.12458 1.11730 1.70530 1.20112 1.18434 1.09171 1.18924 1.06739 0.93607 0.91239 1.18567 1.03618 0.91990 0.89374 1.19934 1.05151 1.00476 0.88643 1.20609 0.98377 0.91711 0.99436 1.20805 1.06239 0.99540 0.92590 1.16819 0.99198 0.79887 0.90697 1.91507 1.87049 1.42397 1.89806 0.91581 0.90348 0.91845 0.87786 0.89000 0.93212 0.86844 0.98225 0.95092 0.92383 0.92029 0.94291 0.82767 0.86917 0.85733 0.84536 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.09 0.84 5.51 -4.04 -0.02 0.82 16 3 N -0.49 -6.12 2.39 -111.16 -0.27 -6.39 16 4 C 0.31 4.66 6.57 -154.80 -1.02 3.65 16 5 C 0.13 1.84 5.15 -4.97 -0.03 1.82 16 6 N -0.52 -8.79 4.47 -237.51 -1.06 -9.86 16 7 C 0.16 3.15 3.84 -4.98 -0.02 3.13 16 8 C -0.52 -12.43 7.48 -34.44 -0.26 -12.68 16 9 H 0.09 2.40 6.12 -52.49 -0.32 2.08 16 10 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.89 -24.67 13.96 55.43 0.77 -23.90 16 12 Si 0.87 19.15 27.51 -169.99 -4.68 14.48 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -5.53 6.48 56.52 0.37 -5.16 16 16 C 0.06 0.98 3.48 -3.82 -0.01 0.96 16 17 C -0.04 -0.63 4.40 -29.52 -0.13 -0.76 16 18 C 0.22 3.67 15.43 -20.76 -0.32 3.35 16 19 N -0.47 -8.57 18.54 42.16 0.78 -7.79 16 20 N -0.46 -8.20 11.27 -8.19 -0.09 -8.29 16 21 C 0.01 0.23 7.21 -84.64 -0.61 -0.38 16 22 C 0.07 0.99 6.87 -83.99 -0.58 0.41 16 23 C -0.12 -1.23 10.04 -39.50 -0.40 -1.63 16 24 C -0.08 -0.74 10.02 -39.54 -0.40 -1.13 16 25 C -0.17 -1.82 9.99 -39.54 -0.40 -2.21 16 26 C 0.15 2.23 7.34 -39.10 -0.29 1.94 16 27 F -0.13 -2.02 17.27 2.25 0.04 -1.98 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.99 4.71 -51.93 -0.24 0.74 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.59 7.63 -51.92 -0.40 0.19 16 34 H 0.11 1.65 7.82 -51.93 -0.41 1.24 16 35 H 0.00 0.00 6.68 -51.93 -0.35 -0.35 16 36 H 0.03 0.62 7.26 -51.93 -0.38 0.24 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 0.85 4.37 -51.93 -0.23 0.63 16 39 H 0.04 0.54 7.56 -51.93 -0.39 0.15 16 40 H 0.16 2.92 5.49 -51.93 -0.28 2.64 16 41 H 0.11 1.90 7.92 -51.93 -0.41 1.49 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -30.35 365.77 -8.71 -39.06 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.54 Total: 0.94 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.18 Total: -1.79 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.14 Total: -56.22 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.68 Total: 14.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.35 -8.71 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132814491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.649 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds