Wall clock time and date at job start Tue Mar 31 2020 16:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46957 * 2 1 4 4 C 1.36087 * 126.34697 * 270.02655 * 3 2 1 5 5 C 1.50695 * 124.95629 * 0.02562 * 4 3 2 6 6 N 1.46907 * 109.47122 * 270.02523 * 5 4 3 7 7 C 1.46894 * 110.99754 * 189.99925 * 6 5 4 8 8 C 1.50703 * 109.46982 * 159.78302 * 7 6 5 9 9 H 1.07999 * 119.99895 * 357.81830 * 8 7 6 10 10 C 1.37874 * 120.00419 * 177.82199 * 8 7 6 11 11 N 1.31512 * 120.00275 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99634 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47070 * 90.00574 * 12 10 8 14 14 H 1.48505 * 109.47029 * 209.99872 * 12 10 8 15 15 H 1.48499 * 109.47297 * 330.00251 * 12 10 8 16 16 C 1.46903 * 110.99814 * 66.04391 * 6 5 4 17 17 C 1.53001 * 109.46901 * 195.42876 * 16 6 5 18 18 C 1.47200 * 109.47047 * 173.93122 * 17 16 6 19 19 N 5.01740 * 146.19071 * 200.40611 * 2 1 3 20 20 N 1.30082 * 110.08508 * 180.02562 * 4 3 2 21 21 C 1.35808 * 109.64121 * 359.97438 * 20 4 3 22 22 C 1.38077 * 126.34715 * 90.02502 * 3 2 1 23 23 C 1.38830 * 134.03855 * 0.02562 * 22 3 2 24 24 C 1.37858 * 119.87154 * 179.97438 * 23 22 3 25 25 C 1.38739 * 120.47734 * 359.97438 * 24 23 22 26 26 C 1.37838 * 120.49906 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.14067 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47230 * 60.00305 * 1 2 3 29 29 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47156 * 299.99804 * 1 2 3 31 31 H 1.09006 * 109.47020 * 240.00229 * 2 1 3 32 32 H 1.08994 * 109.47364 * 120.00159 * 2 1 3 33 33 H 1.09008 * 109.47178 * 30.02323 * 5 4 3 34 34 H 1.09000 * 109.47265 * 150.02491 * 5 4 3 35 35 H 1.08997 * 109.47419 * 279.77724 * 7 6 5 36 36 H 1.08998 * 109.47684 * 39.78748 * 7 6 5 37 37 H 0.97001 * 120.00237 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47364 * 315.42791 * 16 6 5 39 39 H 1.09001 * 109.47105 * 75.43201 * 16 6 5 40 40 H 1.09000 * 109.46987 * 293.92864 * 17 16 6 41 41 H 1.08994 * 109.46973 * 53.93211 * 17 16 6 42 42 H 1.07999 * 120.06747 * 0.02562 * 23 22 3 43 43 H 1.07998 * 119.75718 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.75193 * 179.72469 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2867 2.1418 -1.0961 5 6 2.1246 1.6867 -2.5235 6 7 3.3774 1.0762 -2.9882 7 6 3.3402 0.8360 -4.4369 8 6 4.7467 0.6905 -4.9582 9 1 5.5856 0.8037 -4.2875 10 6 4.9626 0.4130 -6.2913 11 7 6.1900 0.2866 -6.7463 12 14 3.5116 0.2166 -7.4513 13 1 3.1649 1.5359 -8.0381 14 1 3.8713 -0.7294 -8.5381 15 1 2.3453 -0.3129 -6.6999 16 6 3.6614 -0.1651 -2.2557 17 6 5.1220 -0.5641 -2.4755 18 6 5.4468 -1.7232 -1.6284 19 7 5.6990 -2.6166 -0.9734 20 7 2.7036 3.3189 -0.7318 21 6 2.7307 3.3942 0.6239 22 6 2.2916 2.1526 1.1121 23 6 2.2153 1.9336 2.4809 24 6 2.5706 2.9365 3.3576 25 6 3.0053 4.1653 2.8822 26 6 3.0878 4.4016 1.5267 27 9 3.5115 5.6011 1.0718 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3197 0.9539 -2.5821 34 1 1.8826 2.5433 -3.1527 35 1 2.7814 -0.0777 -4.6395 36 1 2.8543 1.6765 -4.9323 37 1 6.3419 0.0910 -7.6842 38 1 3.4838 -0.0080 -1.1918 39 1 3.0092 -0.9590 -2.6196 40 1 5.2736 -0.8256 -3.5228 41 1 5.7704 0.2715 -2.2121 42 1 1.8790 0.9792 2.8583 43 1 2.5110 2.7640 4.4220 44 1 3.2765 4.9442 3.5795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132814491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:38 Heat of formation + Delta-G solvation = 54.731621 kcal Electronic energy + Delta-G solvation = -28298.012772 eV Core-core repulsion = 24358.646787 eV Total energy + Delta-G solvation = -3939.365984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82597 -43.29871 -39.39129 -38.08900 -37.33955 -36.05998 -34.57898 -32.77163 -31.92956 -31.19903 -30.19656 -29.55122 -27.05525 -25.20669 -24.53125 -23.38029 -23.03565 -22.11622 -20.70124 -19.47123 -18.73302 -18.44027 -17.80101 -17.28875 -17.11183 -16.71182 -16.52481 -16.43870 -16.11410 -15.76222 -15.70052 -15.31061 -15.17544 -14.66353 -14.52314 -14.29290 -14.21538 -13.82707 -13.79406 -13.64071 -13.28486 -13.26359 -13.08538 -12.79261 -12.63575 -12.53857 -12.46423 -12.42551 -12.18433 -12.07802 -11.86532 -11.59278 -11.28643 -11.17122 -11.03858 -10.61034 -9.45484 -9.10345 -8.97569 -8.13679 -6.14539 -0.20557 0.37955 1.45904 1.48304 1.51461 1.55202 1.63401 1.75353 1.79779 2.45755 2.66461 2.87508 2.97414 3.20026 3.22957 3.44059 3.57928 3.66194 3.96385 3.98555 4.04817 4.12631 4.15965 4.23889 4.29701 4.34331 4.46690 4.50652 4.55056 4.72272 4.79738 4.83593 4.88751 4.99031 5.10057 5.14196 5.18660 5.29109 5.30959 5.32400 5.42216 5.65870 5.86314 5.94304 6.11096 6.23371 6.55803 6.64507 6.86811 6.93771 7.46926 9.00428 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.003698 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.507788 B = 7570.714876 C = 8123.424182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 N -0.479 5.479 4 C 0.299 3.701 5 C 0.132 3.868 6 N -0.535 5.535 7 C 0.166 3.834 8 C -0.509 4.509 9 H 0.066 0.934 10 C 0.016 3.984 11 N -0.945 5.945 12 Si 0.929 3.071 13 H -0.277 1.277 14 H -0.295 1.295 15 H -0.238 1.238 16 C 0.070 3.930 17 C -0.027 4.027 18 C 0.240 3.760 19 N -0.490 5.490 20 N -0.516 5.516 21 C -0.025 4.025 22 C 0.067 3.933 23 C -0.115 4.115 24 C -0.069 4.069 25 C -0.155 4.155 26 C 0.111 3.889 27 F -0.150 7.150 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.015 0.985 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 0.080 19.344 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.036 4.036 3 N -0.169 5.169 4 C 0.033 3.967 5 C 0.003 3.997 6 N -0.260 5.260 7 C 0.040 3.960 8 C -0.547 4.547 9 H 0.084 0.916 10 C -0.182 4.182 11 N -0.586 5.586 12 Si 0.754 3.246 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.161 1.161 16 C -0.059 4.059 17 C -0.067 4.067 18 C -0.077 4.077 19 N -0.168 5.168 20 N -0.235 5.235 21 C -0.144 4.144 22 C -0.044 4.044 23 C -0.136 4.136 24 C -0.089 4.089 25 C -0.176 4.176 26 C 0.090 3.910 27 F -0.128 7.128 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.032 0.968 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.176 0.824 43 H 0.199 0.801 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.576 -0.400 19.689 24.500 hybrid contribution -0.588 -0.230 -1.376 1.513 sum -15.164 -0.629 18.313 23.785 Atomic orbital electron populations 1.22151 0.92369 1.04603 1.02948 1.22400 0.97107 0.77898 1.06223 1.45663 1.53612 1.13667 1.03959 1.23620 0.95717 0.86168 0.91197 1.20631 0.92120 1.00824 0.86134 1.61606 1.32273 1.26046 1.06053 1.20159 0.96500 0.96018 0.83328 1.21425 0.92935 1.46123 0.94211 0.91566 1.25651 0.97551 0.95170 0.99839 1.70027 1.22015 1.51031 1.15504 0.85996 0.81264 0.78155 0.79184 1.20222 1.22162 1.16081 1.22120 0.94340 0.91205 0.98247 1.19762 0.98623 0.89406 0.98899 1.29674 0.91843 0.93922 0.92244 1.81135 1.10375 1.12916 1.12406 1.70405 1.21833 1.20364 1.10918 1.19325 1.08594 0.95525 0.90986 1.18926 1.03662 0.91114 0.90654 1.20430 1.03830 1.02144 0.87212 1.21177 0.95967 0.90237 1.01476 1.21239 1.04133 1.00976 0.91236 1.17370 1.01833 0.79559 0.92223 1.91440 1.87668 1.43479 1.90250 0.92358 0.88121 0.91788 0.87974 0.87178 0.89942 0.87549 0.96764 0.94888 0.92843 0.90504 0.92253 0.85249 0.87942 0.82415 0.80075 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.08 1.27 5.51 86.38 0.48 1.74 16 3 N -0.48 -11.17 2.39 -505.60 -1.21 -12.37 16 4 C 0.30 8.88 6.57 137.91 0.91 9.79 16 5 C 0.13 3.66 5.15 85.55 0.44 4.10 16 6 N -0.53 -17.82 4.47 -905.35 -4.05 -21.87 16 7 C 0.17 6.39 3.84 85.56 0.33 6.72 16 8 C -0.51 -24.65 7.48 25.60 0.19 -24.46 16 9 H 0.07 3.52 6.12 -2.91 -0.02 3.50 16 10 C 0.02 0.81 5.47 84.65 0.46 1.28 16 11 N -0.94 -54.36 13.96 21.45 0.30 -54.06 16 12 Si 0.93 39.29 27.51 68.60 1.89 41.18 16 13 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 14 H -0.30 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.24 -8.82 6.48 99.48 0.64 -8.17 16 16 C 0.07 2.00 3.48 86.30 0.30 2.30 16 17 C -0.03 -0.88 4.40 28.79 0.13 -0.75 16 18 C 0.24 7.78 15.43 89.44 1.38 9.16 16 19 N -0.49 -17.21 18.54 20.01 0.37 -16.84 16 20 N -0.52 -18.76 11.27 -179.84 -2.03 -20.78 16 21 C -0.03 -0.81 7.21 39.47 0.28 -0.53 16 22 C 0.07 1.66 6.87 38.84 0.27 1.92 16 23 C -0.12 -1.91 10.04 22.32 0.22 -1.69 16 24 C -0.07 -0.96 10.02 22.30 0.22 -0.73 16 25 C -0.16 -2.96 9.99 22.29 0.22 -2.73 16 26 C 0.11 3.22 7.34 22.58 0.17 3.39 16 27 F -0.15 -4.95 17.27 44.97 0.78 -4.17 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.59 4.71 -2.38 -0.01 1.57 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.72 7.63 -2.38 -0.02 1.70 16 34 H 0.11 3.06 7.82 -2.39 -0.02 3.04 16 35 H 0.01 0.53 6.68 -2.39 -0.02 0.51 16 36 H 0.03 1.27 7.26 -2.39 -0.02 1.26 16 37 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.08 1.98 4.37 -2.39 -0.01 1.97 16 39 H 0.06 1.47 7.56 -2.39 -0.02 1.46 16 40 H 0.13 5.02 5.49 -2.39 -0.01 5.01 16 41 H 0.10 3.59 7.92 -2.39 -0.02 3.57 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -70.34 365.77 3.77 -66.57 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.98 Total: 13.93 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.74 Total: 8.42 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -6.61 Total: -125.93 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.17 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.89 Total: 41.18 kcal Total: -70.34 3.77 -66.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132814491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.298 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds