Wall clock time and date at job start Tue Mar 31 2020 17:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46912 * 2 1 4 4 C 1.46504 * 119.99615 * 274.91152 * 3 2 1 5 5 C 1.50703 * 109.47125 * 263.41568 * 4 3 2 6 6 H 1.07999 * 119.99955 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99826 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99919 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46924 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47161 * 119.99775 * 9 7 5 12 12 H 1.48496 * 109.47275 * 240.00146 * 9 7 5 13 13 C 1.34777 * 120.00368 * 94.91070 * 3 2 1 14 14 O 1.21648 * 119.99714 * 4.10814 * 13 3 2 15 15 C 1.46978 * 120.00114 * 184.10126 * 13 3 2 16 16 O 1.34944 * 125.12976 * 353.18177 * 15 13 3 17 17 C 1.34719 * 110.86341 * 180.02562 * 16 15 13 18 18 C 1.39026 * 133.24570 * 179.97438 * 17 16 15 19 19 C 1.37795 * 119.85425 * 180.02562 * 18 17 16 20 20 C 1.38834 * 120.74651 * 0.02562 * 19 18 17 21 21 C 1.36628 * 120.44317 * 359.97438 * 20 19 18 22 22 C 1.39709 * 119.70761 * 359.97438 * 21 20 19 23 23 C 1.35801 * 125.13287 * 173.20506 * 15 13 3 24 24 C 1.50708 * 126.95837 * 359.96536 * 23 15 13 25 25 N 1.46898 * 109.46839 * 270.01862 * 24 23 15 26 26 C 1.46909 * 110.99907 * 66.04751 * 25 24 23 27 27 C 1.46897 * 111.00126 * 189.99891 * 25 24 23 28 28 H 1.08999 * 109.47599 * 300.00416 * 1 2 3 29 29 H 1.08999 * 109.46991 * 60.00645 * 1 2 3 30 30 H 1.09005 * 109.46715 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47599 * 239.99584 * 2 1 3 32 32 H 1.08999 * 109.46991 * 119.99355 * 2 1 3 33 33 H 1.09003 * 109.47375 * 23.41807 * 4 3 2 34 34 H 1.09007 * 109.46868 * 143.41510 * 4 3 2 35 35 H 0.97008 * 119.99665 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.07377 * 0.04830 * 18 17 16 37 37 H 1.08001 * 119.62473 * 180.28141 * 19 18 17 38 38 H 1.07999 * 119.78009 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.14695 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.46998 * 30.02253 * 24 23 15 41 41 H 1.08999 * 109.47111 * 150.02587 * 24 23 15 42 42 H 1.08998 * 109.47110 * 59.99857 * 26 25 24 43 43 H 1.08995 * 109.47143 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.46962 * 300.00139 * 26 25 24 45 45 H 1.09002 * 109.46769 * 60.00322 * 27 25 24 46 46 H 1.08997 * 109.47332 * 180.02562 * 27 25 24 47 47 H 1.08999 * 109.47196 * 300.00220 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1600 2.1080 -1.2642 5 6 3.5880 2.0192 -1.7373 6 1 4.3172 1.4761 -1.1545 7 6 3.9638 2.6322 -2.9138 8 7 3.0762 3.2947 -3.6227 9 14 5.7341 2.5227 -3.4999 10 1 6.5287 1.7281 -2.5291 11 1 5.7752 1.8643 -4.8303 12 1 6.3059 3.8891 -3.6059 13 6 2.3371 1.9834 1.1629 14 8 2.2910 1.3570 2.2047 15 6 2.7406 3.3966 1.1722 16 8 2.9533 4.1507 0.0736 17 6 3.3125 5.4038 0.4138 18 6 3.6348 6.5362 -0.3254 19 6 3.9712 7.7052 0.3220 20 6 3.9932 7.7675 1.7087 21 6 3.6802 6.6675 2.4562 22 6 3.3354 5.4728 1.8192 23 6 2.9562 4.1404 2.2878 24 6 2.8295 3.6852 3.7189 25 7 1.4566 3.9178 4.1869 26 6 0.5025 3.0666 3.4636 27 6 1.3527 3.7102 5.6374 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5012 1.6673 -2.0125 34 1 1.8912 3.1537 -1.1141 35 1 3.3407 3.7263 -4.4502 36 1 3.6212 6.4999 -1.4047 37 1 4.2164 8.5840 -0.2560 38 1 4.2595 8.6917 2.2000 39 1 3.6985 6.7215 3.5347 40 1 3.0603 2.6219 3.7836 41 1 3.5257 4.2468 4.3418 42 1 0.7545 2.0187 3.6264 43 1 -0.5059 3.2586 3.8299 44 1 0.5511 3.2906 2.3979 45 1 2.0193 4.4021 6.1521 46 1 0.3261 3.8885 5.9573 47 1 1.6354 2.6856 5.8790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133261695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:53 Heat of formation + Delta-G solvation = -6.826519 kcal Electronic energy + Delta-G solvation = -29985.418357 eV Core-core repulsion = 26134.550566 eV Total energy + Delta-G solvation = -3850.867792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.46851 -40.71702 -38.71239 -38.41871 -36.99732 -34.75491 -33.95668 -32.37051 -31.30192 -30.50314 -29.11281 -28.56379 -28.02806 -25.57837 -25.07651 -23.67141 -23.37549 -23.09003 -21.04561 -20.48370 -18.96270 -18.57963 -17.86777 -17.45448 -17.34915 -16.95467 -16.44389 -16.10258 -16.08109 -15.95720 -15.58893 -15.45422 -14.96241 -14.71654 -14.49426 -14.37195 -14.19323 -13.74851 -13.54228 -13.28281 -13.21306 -13.15807 -13.07199 -12.82359 -12.73942 -12.72528 -12.54559 -12.52081 -12.42183 -12.22959 -11.87346 -11.77288 -11.71860 -11.11460 -10.97141 -10.59145 -9.68266 -9.51503 -9.33020 -9.01431 -8.20664 -6.32274 -0.35909 0.47857 0.86559 1.33182 1.35871 1.45922 1.68887 2.11300 2.23353 2.40900 2.80038 3.10523 3.16366 3.37420 3.59733 3.78750 3.98025 4.14785 4.16619 4.25127 4.32742 4.37003 4.41117 4.48899 4.49752 4.57149 4.58070 4.65100 4.71598 4.76018 4.85935 4.91988 4.97050 4.98965 5.00604 5.02559 5.11184 5.25044 5.33808 5.42970 5.47015 5.53512 5.62713 5.70341 5.83826 5.95042 6.03784 6.10838 6.22616 6.37302 6.75690 7.07183 7.36280 8.86260 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.006368 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.702524 B = 4395.980165 C = 6746.698903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.106 3.894 3 N -0.589 5.589 4 C 0.251 3.749 5 C -0.532 4.532 6 H 0.041 0.959 7 C 0.030 3.970 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.277 1.277 13 C 0.590 3.410 14 O -0.552 6.552 15 C -0.036 4.036 16 O -0.161 6.161 17 C 0.028 3.972 18 C -0.134 4.134 19 C -0.076 4.076 20 C -0.134 4.134 21 C -0.059 4.059 22 C -0.145 4.145 23 C -0.094 4.094 24 C 0.125 3.875 25 N -0.544 5.544 26 C 0.035 3.965 27 C 0.027 3.973 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.152 0.848 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 6.146 13.369 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.317 5.317 4 C 0.130 3.870 5 C -0.571 4.571 6 H 0.059 0.941 7 C -0.170 4.170 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.378 3.622 14 O -0.436 6.436 15 C -0.087 4.087 16 O -0.061 6.061 17 C -0.020 4.020 18 C -0.153 4.153 19 C -0.094 4.094 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.146 4.146 23 C -0.097 4.097 24 C -0.003 4.003 25 N -0.268 5.268 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.170 0.830 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.066 6.258 13.318 14.859 hybrid contribution 1.020 -1.161 -1.074 1.882 sum -1.046 5.097 12.244 13.304 Atomic orbital electron populations 1.22028 0.94175 1.03422 1.01386 1.21572 0.95521 0.81343 1.03122 1.48277 1.61404 1.14848 1.07193 1.19280 0.96306 0.91780 0.79596 1.21443 0.95027 1.33653 1.06945 0.94107 1.25463 1.00757 0.94427 0.96364 1.70015 1.35197 1.34634 1.15480 0.85697 0.80773 0.78070 0.78322 1.20194 1.19697 1.20247 1.16870 0.77554 0.83649 0.84081 1.90674 1.57013 1.64071 1.31797 1.21985 1.08092 0.93219 0.85434 1.84744 1.70059 1.19350 1.31990 1.20564 1.00766 0.85956 0.94725 1.20287 1.04724 0.90278 1.00014 1.21384 0.96352 0.96131 0.95524 1.21194 1.01203 0.99489 0.93307 1.20651 0.96216 0.89598 1.01246 1.19957 1.07201 0.95323 0.92166 1.21338 1.01488 0.91540 0.95375 1.20534 0.91259 0.99867 0.88597 1.62028 1.04098 1.54782 1.05938 1.22335 0.96246 0.95134 0.97611 1.22444 1.03640 1.00063 0.85884 0.93389 0.93206 0.88743 0.90270 0.90059 0.95570 0.94725 0.92446 0.86266 0.81546 0.81169 0.83004 0.93014 0.87846 0.94887 0.90492 0.95105 0.89615 0.90082 0.95764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.11 3.90 6.18 86.38 0.53 4.43 16 3 N -0.59 -26.48 2.48 -830.52 -2.06 -28.54 16 4 C 0.25 12.93 4.79 85.63 0.41 13.34 16 5 C -0.53 -29.57 8.40 25.60 0.22 -29.35 16 6 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 7 C 0.03 1.67 5.46 84.66 0.46 2.14 16 8 N -0.91 -52.01 13.29 21.45 0.28 -51.72 16 9 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.59 26.56 6.46 86.53 0.56 27.12 16 14 O -0.55 -24.07 11.50 -4.18 -0.05 -24.12 16 15 C -0.04 -1.63 5.86 24.00 0.14 -1.49 16 16 O -0.16 -7.89 6.41 -13.00 -0.08 -7.98 16 17 C 0.03 1.20 7.41 23.07 0.17 1.37 16 18 C -0.13 -4.80 10.07 22.35 0.23 -4.58 16 19 C -0.08 -1.92 10.01 22.31 0.22 -1.70 16 20 C -0.13 -2.95 9.98 22.04 0.22 -2.73 16 21 C -0.06 -1.58 10.06 22.25 0.22 -1.35 16 22 C -0.15 -5.27 6.37 -20.24 -0.13 -5.40 16 23 C -0.09 -3.61 5.25 -18.35 -0.10 -3.70 16 24 C 0.12 3.98 5.14 85.56 0.44 4.42 16 25 N -0.54 -15.89 5.01 -953.46 -4.78 -20.66 16 26 C 0.04 1.13 8.13 127.69 1.04 2.17 16 27 C 0.03 0.57 9.57 127.69 1.22 1.79 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 32 H 0.08 2.90 7.23 -2.39 -0.02 2.88 16 33 H 0.03 1.40 8.02 -2.39 -0.02 1.38 16 34 H 0.04 1.97 5.37 -2.38 -0.01 1.95 16 35 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.05 1.86 6.23 -2.39 -0.01 1.84 16 41 H 0.10 2.70 8.06 -2.39 -0.02 2.68 16 42 H 0.03 1.13 6.53 -2.39 -0.02 1.12 16 43 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 44 H 0.03 1.16 5.72 -2.39 -0.01 1.15 16 45 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 46 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 47 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -67.86 379.45 2.91 -64.95 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.97 Total: 19.47 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.59 Total: 2.58 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -6.55 Total: -100.92 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.13 Total: -32.10 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.86 2.91 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133261695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.128 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds