Wall clock time and date at job start Tue Mar 31 2020 17:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 14 14 O 1.21273 * 120.00093 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99767 * 359.97438 * 13 3 2 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 3 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.39830 * 119.77269 * 90.00417 * 17 16 15 19 19 C 1.38862 * 120.19397 * 18.44673 * 18 17 16 20 20 C 1.38107 * 119.89197 * 179.97438 * 19 18 17 21 21 C 1.38302 * 120.09124 * 0.03233 * 20 19 18 22 22 C 1.38281 * 120.14801 * 359.97438 * 21 20 19 23 23 C 1.38092 * 120.02411 * 359.97438 * 22 21 20 24 24 C 1.50656 * 120.17777 * 179.97438 * 23 22 21 25 25 C 1.52908 * 109.52195 * 146.07472 * 24 23 22 26 26 C 1.34562 * 119.77384 * 269.72517 * 17 16 15 27 27 O 1.21287 * 119.61582 * 0.84063 * 26 17 16 28 28 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 29 29 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 30 30 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 33 33 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 34 34 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 35 35 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46797 * 60.00350 * 15 13 3 37 37 H 1.08992 * 109.47518 * 300.00347 * 15 13 3 38 38 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 39 39 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 40 40 H 1.07999 * 120.05410 * 0.02582 * 19 18 17 41 41 H 1.07995 * 119.95417 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.92607 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.98685 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46742 * 266.09393 * 24 23 22 45 45 H 1.09000 * 109.46418 * 26.07150 * 24 23 22 46 46 H 1.09007 * 109.39912 * 168.71013 * 25 24 23 47 47 H 1.08998 * 109.40153 * 288.53736 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 7 2.0780 1.5533 4.9039 18 6 3.1067 0.8219 5.5055 19 6 4.4278 1.0443 5.1401 20 6 5.4390 0.3187 5.7387 21 6 5.1372 -0.6286 6.7001 22 6 3.8226 -0.8525 7.0659 23 6 2.8073 -0.1293 6.4717 24 6 1.3738 -0.3707 6.8672 25 6 0.5959 0.9439 6.7968 26 6 0.8669 1.6319 5.4852 27 8 -0.0175 2.2621 4.9450 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7173 2.5730 -4.0836 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0126 2.5299 38 1 3.3701 2.5382 3.5779 39 1 1.6919 3.1314 3.5771 40 1 4.6642 1.7842 4.3897 41 1 6.4668 0.4912 5.4556 42 1 5.9301 -1.1942 7.1667 43 1 3.5898 -1.5931 7.8166 44 1 0.9260 -1.0946 6.1862 45 1 1.3383 -0.7594 7.8849 46 1 -0.4710 0.7385 6.8853 47 1 0.9086 1.5938 7.6141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133403863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:00 Heat of formation + Delta-G solvation = -44.421117 kcal Electronic energy + Delta-G solvation = -28576.216019 eV Core-core repulsion = 24723.718004 eV Total energy + Delta-G solvation = -3852.498016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38381 -39.22761 -38.80904 -35.96015 -35.39158 -34.85202 -32.78010 -31.46518 -30.36147 -30.12340 -29.56369 -27.76649 -25.32439 -24.29819 -23.04058 -22.97187 -22.31396 -21.19996 -19.15334 -18.37647 -17.93079 -17.20711 -16.90519 -16.37187 -16.23287 -15.53140 -15.34558 -15.10524 -14.86112 -14.52311 -14.20797 -14.11372 -13.83222 -13.55939 -13.46917 -13.38480 -12.95901 -12.76677 -12.70135 -12.43471 -12.18526 -12.14071 -11.87205 -11.78222 -11.47826 -11.43036 -11.25148 -11.03363 -10.91476 -10.63915 -10.53805 -10.42527 -10.15220 -10.01381 -9.54488 -9.06264 -9.04607 -8.58706 -8.09017 -7.73213 -6.08853 -4.07442 0.98621 1.11108 2.37141 2.56883 3.29681 3.32111 3.35676 3.37989 3.54657 3.85499 4.10170 4.34529 4.39993 4.40461 4.64335 4.81142 4.86865 4.92001 5.02374 5.05770 5.12222 5.15347 5.25475 5.26036 5.28028 5.38238 5.46739 5.54285 5.57047 5.60778 5.67946 5.76633 5.85507 5.89015 6.01474 6.05776 6.15666 6.17679 6.32716 6.37153 6.42566 6.65993 6.71657 6.95664 7.16496 7.34245 7.61304 7.78466 8.23709 8.46766 8.91102 8.96810 9.51727 11.04491 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003183 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.944378 B = 8793.365780 C = 9648.496367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.591 5.591 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.514 3.486 14 O -0.542 6.542 15 C -0.152 4.152 16 C 0.119 3.881 17 N -0.551 5.551 18 C 0.165 3.835 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.075 4.075 25 C -0.137 4.137 26 C 0.515 3.485 27 O -0.521 6.521 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -9.547 22.903 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.322 5.322 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.420 6.420 15 C -0.194 4.194 16 C -0.002 4.002 17 N -0.274 5.274 18 C 0.070 3.930 19 C -0.170 4.170 20 C -0.105 4.105 21 C -0.163 4.163 22 C -0.105 4.105 23 C -0.131 4.131 24 C -0.112 4.112 25 C -0.177 4.177 26 C 0.305 3.695 27 O -0.396 6.396 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.822 -8.493 22.395 24.904 hybrid contribution -0.289 0.390 -0.789 0.926 sum -7.111 -8.103 21.606 24.146 Atomic orbital electron populations 1.22230 0.96724 1.01580 1.02320 1.21443 0.93441 0.83806 1.03045 1.47920 1.63887 1.13400 1.07004 1.19655 0.97311 0.93420 0.80084 1.21323 0.95314 1.32875 1.07118 0.90780 1.24849 0.95000 0.95799 0.97338 1.69896 1.15134 1.45026 1.23581 0.86855 0.81500 0.81636 0.79743 1.19886 1.21071 1.19074 1.20057 0.78212 0.86791 0.84885 1.90672 1.45978 1.18072 1.87293 1.21976 1.03883 1.00129 0.93369 1.21483 1.04053 0.95303 0.79398 1.45635 1.10601 1.48665 1.22468 1.17707 0.88089 0.92606 0.94550 1.21033 0.90618 1.02368 1.02989 1.21045 0.99147 0.94988 0.95357 1.21101 0.96442 0.99653 0.99094 1.20803 0.92024 0.98477 0.99152 1.19499 0.96066 0.97926 0.99624 1.20402 0.90973 0.96726 1.03092 1.21718 1.03288 0.97491 0.95157 1.20789 0.81183 0.80494 0.87051 1.90764 1.43103 1.41215 1.64482 0.92916 0.92186 0.91994 0.89693 0.91489 0.95263 0.94558 0.92574 0.89102 0.89034 0.88604 0.88138 0.84791 0.85355 0.85821 0.85557 0.89956 0.89233 0.87402 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.59 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 9 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.51 10.59 7.67 -10.98 -0.08 10.51 16 14 O -0.54 -13.28 15.56 5.56 0.09 -13.19 16 15 C -0.15 -2.36 4.58 -27.88 -0.13 -2.49 16 16 C 0.12 1.78 4.43 -4.04 -0.02 1.76 16 17 N -0.55 -7.00 2.69 -113.61 -0.31 -7.31 16 18 C 0.17 1.85 6.32 -83.75 -0.53 1.32 16 19 C -0.15 -1.66 9.33 -39.40 -0.37 -2.03 16 20 C -0.09 -0.81 10.04 -39.61 -0.40 -1.21 16 21 C -0.14 -1.15 10.04 -39.54 -0.40 -1.55 16 22 C -0.09 -0.66 9.69 -39.62 -0.38 -1.04 16 23 C -0.13 -1.15 5.66 -104.47 -0.59 -1.74 16 24 C -0.07 -0.51 6.00 -27.95 -0.17 -0.67 16 25 C -0.14 -1.11 6.08 -28.00 -0.17 -1.28 16 26 C 0.52 6.54 7.46 -11.15 -0.08 6.46 16 27 O -0.52 -8.52 16.60 5.55 0.09 -8.43 16 28 H 0.05 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 33 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 37 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 38 H 0.10 1.42 5.77 -51.93 -0.30 1.12 16 39 H 0.10 1.69 7.35 -51.93 -0.38 1.31 16 40 H 0.13 1.56 6.02 -52.49 -0.32 1.25 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.39 8.06 -51.93 -0.42 -0.03 16 46 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -35.84 381.34 -9.13 -44.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.00 Total: 1.22 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.42 Total: -0.42 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.04 Total: -47.02 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.84 -9.13 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133403863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.547 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds