Wall clock time and date at job start Tue Mar 31 2020 17:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 14 14 O 1.21273 * 120.00093 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99767 * 359.97438 * 13 3 2 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 3 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.39830 * 119.77269 * 90.00417 * 17 16 15 19 19 C 1.38862 * 120.19397 * 18.44673 * 18 17 16 20 20 C 1.38107 * 119.89197 * 179.97438 * 19 18 17 21 21 C 1.38302 * 120.09124 * 0.03233 * 20 19 18 22 22 C 1.38281 * 120.14801 * 359.97438 * 21 20 19 23 23 C 1.38092 * 120.02411 * 359.97438 * 22 21 20 24 24 C 1.50656 * 120.17777 * 179.97438 * 23 22 21 25 25 C 1.52908 * 109.52195 * 146.07472 * 24 23 22 26 26 C 1.34562 * 119.77384 * 269.72517 * 17 16 15 27 27 O 1.21287 * 119.61582 * 0.84063 * 26 17 16 28 28 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 29 29 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 30 30 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 33 33 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 34 34 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 35 35 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46797 * 60.00350 * 15 13 3 37 37 H 1.08992 * 109.47518 * 300.00347 * 15 13 3 38 38 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 39 39 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 40 40 H 1.07999 * 120.05410 * 0.02582 * 19 18 17 41 41 H 1.07995 * 119.95417 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.92607 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.98685 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46742 * 266.09393 * 24 23 22 45 45 H 1.09000 * 109.46418 * 26.07150 * 24 23 22 46 46 H 1.09007 * 109.39912 * 168.71013 * 25 24 23 47 47 H 1.08998 * 109.40153 * 288.53736 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 7 2.0780 1.5533 4.9039 18 6 3.1067 0.8219 5.5055 19 6 4.4278 1.0443 5.1401 20 6 5.4390 0.3187 5.7387 21 6 5.1372 -0.6286 6.7001 22 6 3.8226 -0.8525 7.0659 23 6 2.8073 -0.1293 6.4717 24 6 1.3738 -0.3707 6.8672 25 6 0.5959 0.9439 6.7968 26 6 0.8669 1.6319 5.4852 27 8 -0.0175 2.2621 4.9450 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7173 2.5730 -4.0836 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0126 2.5299 38 1 3.3701 2.5382 3.5779 39 1 1.6919 3.1314 3.5771 40 1 4.6642 1.7842 4.3897 41 1 6.4668 0.4912 5.4556 42 1 5.9301 -1.1942 7.1667 43 1 3.5898 -1.5931 7.8166 44 1 0.9260 -1.0946 6.1862 45 1 1.3383 -0.7594 7.8849 46 1 -0.4710 0.7385 6.8853 47 1 0.9086 1.5938 7.6141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133403863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:59 Heat of formation + Delta-G solvation = -66.535380 kcal Electronic energy + Delta-G solvation = -28577.174966 eV Core-core repulsion = 24723.718004 eV Total energy + Delta-G solvation = -3853.456962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27875 -40.83339 -39.68225 -37.23326 -36.78521 -35.59929 -34.89925 -32.76651 -31.77813 -30.94172 -30.37992 -29.55279 -26.51133 -25.16650 -24.46447 -23.89350 -23.77813 -22.23613 -19.97344 -19.92614 -19.14125 -18.84538 -18.36998 -17.51463 -17.37111 -16.95646 -16.67734 -16.21359 -15.98262 -15.73135 -15.34143 -15.01305 -14.91124 -14.79014 -14.70233 -14.56243 -14.31618 -14.04847 -13.80121 -13.62580 -13.48887 -13.35819 -13.26835 -13.11245 -12.60617 -12.50808 -12.48639 -12.35223 -12.14300 -12.06698 -11.93649 -11.77016 -11.75973 -11.41180 -10.96322 -10.85729 -10.76700 -9.72500 -9.49884 -8.92986 -8.36692 -6.41636 0.24335 0.41879 1.29907 1.34046 1.42197 1.45128 1.59126 1.67600 2.27817 2.29414 2.84772 2.97432 3.33312 3.55362 3.66909 3.76772 3.79119 3.88204 4.01294 4.07726 4.14758 4.26946 4.31277 4.34396 4.38812 4.48248 4.52994 4.60236 4.64640 4.75126 4.76854 4.83297 4.87027 4.91932 4.93164 4.94646 4.99081 5.15968 5.18379 5.31124 5.42942 5.45497 5.58641 5.60215 5.64387 5.96825 6.20279 6.29122 6.58418 6.60599 6.84132 7.16890 7.31571 8.80102 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003183 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.944378 B = 8793.365780 C = 9648.496367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.598 5.598 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.241 1.241 13 C 0.505 3.495 14 O -0.591 6.591 15 C -0.130 4.130 16 C 0.126 3.874 17 N -0.550 5.550 18 C 0.138 3.862 19 C -0.172 4.172 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.070 4.070 25 C -0.129 4.129 26 C 0.506 3.494 27 O -0.569 6.569 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.269 0.731 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 -12.146 25.130 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.329 5.329 4 C 0.103 3.897 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.583 5.583 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.197 1.197 12 H -0.164 1.164 13 C 0.293 3.707 14 O -0.473 6.473 15 C -0.170 4.170 16 C 0.003 3.997 17 N -0.272 5.272 18 C 0.045 3.955 19 C -0.192 4.192 20 C -0.118 4.118 21 C -0.157 4.157 22 C -0.098 4.098 23 C -0.128 4.128 24 C -0.107 4.107 25 C -0.168 4.168 26 C 0.298 3.702 27 O -0.447 6.447 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.181 0.819 44 H 0.106 0.894 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.674 -11.165 24.658 28.424 hybrid contribution 0.445 1.125 -1.386 1.840 sum -8.229 -10.041 23.272 26.648 Atomic orbital electron populations 1.22150 0.94169 1.03698 1.01824 1.21767 0.95460 0.81108 1.03971 1.48052 1.63786 1.15201 1.05815 1.19318 0.95058 0.92943 0.82401 1.21523 0.96890 1.32223 1.06785 0.95100 1.25803 0.96691 0.97099 0.98862 1.70038 1.17280 1.46463 1.24494 0.85756 0.80443 0.79046 0.77972 1.20261 1.19723 1.16396 1.20927 0.76980 0.86451 0.86338 1.90637 1.48111 1.20412 1.88125 1.21814 1.04895 0.99926 0.90412 1.21154 1.02892 0.94709 0.80960 1.45584 1.11425 1.48669 1.21528 1.17936 0.87412 0.94050 0.96151 1.21033 0.91653 1.02986 1.03548 1.21240 0.99120 0.95476 0.95993 1.21477 0.97740 0.98611 0.97892 1.21235 0.91242 0.98292 0.99028 1.19845 0.97917 0.96756 0.98299 1.20512 0.88916 0.95864 1.05370 1.21799 1.04666 0.98054 0.92262 1.21784 0.80271 0.79856 0.88253 1.90737 1.44431 1.43467 1.66077 0.92873 0.93212 0.88505 0.90401 0.89004 0.93360 0.96525 0.92198 0.87372 0.87614 0.89490 0.90762 0.86960 0.84648 0.83198 0.81893 0.89377 0.85490 0.85777 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.08 5.93 86.38 0.51 3.60 16 3 N -0.60 -25.40 2.46 -826.15 -2.03 -27.43 16 4 C 0.23 11.36 4.23 85.64 0.36 11.72 16 5 C -0.54 -32.10 9.94 25.60 0.25 -31.85 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.01 0.82 5.47 84.65 0.46 1.29 16 8 N -0.94 -60.07 13.96 21.45 0.30 -59.78 16 9 Si 0.95 45.39 27.47 68.60 1.88 47.27 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 13 C 0.50 21.64 7.67 87.66 0.67 22.31 16 14 O -0.59 -30.83 15.56 -3.01 -0.05 -30.88 16 15 C -0.13 -4.11 4.58 29.85 0.14 -3.97 16 16 C 0.13 4.01 4.43 86.38 0.38 4.39 16 17 N -0.55 -14.17 2.69 -631.85 -1.70 -15.87 16 18 C 0.14 3.01 6.32 38.16 0.24 3.25 16 19 C -0.17 -3.95 9.33 22.39 0.21 -3.74 16 20 C -0.10 -1.80 10.04 22.25 0.22 -1.57 16 21 C -0.14 -1.80 10.04 22.30 0.22 -1.57 16 22 C -0.08 -0.88 9.69 22.25 0.22 -0.67 16 23 C -0.13 -1.87 5.66 -19.77 -0.11 -1.98 16 24 C -0.07 -0.65 6.00 29.80 0.18 -0.47 16 25 C -0.13 -1.72 6.08 29.78 0.18 -1.54 16 26 C 0.51 12.64 7.46 87.65 0.65 13.29 16 27 O -0.57 -18.99 16.60 -3.05 -0.05 -19.04 16 28 H 0.05 1.32 7.22 -2.39 -0.02 1.31 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 32 H 0.09 2.38 6.44 -2.39 -0.02 2.37 16 33 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 34 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 35 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 36 H 0.11 3.04 7.40 -2.39 -0.02 3.03 16 37 H 0.11 3.07 7.18 -2.39 -0.02 3.05 16 38 H 0.09 2.87 5.77 -2.39 -0.01 2.86 16 39 H 0.07 2.74 7.35 -2.39 -0.02 2.72 16 40 H 0.11 2.95 6.02 -2.91 -0.02 2.94 16 41 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.13 0.32 8.06 -2.39 -0.02 0.30 16 46 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -84.03 381.34 4.81 -79.22 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.91 Total: 17.26 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.54 Total: 9.24 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.43 Total: -103.07 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.10 Total: -49.91 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -84.03 4.81 -79.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133403863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.683 kcal (2) G-P(sol) polarization free energy of solvation -84.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds