Wall clock time and date at job start Tue Mar 31 2020 16:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 H 1.09002 * 111.19115 * 267.59212 * 5 4 3 7 7 C 1.50703 * 110.85550 * 143.78754 * 5 4 3 8 8 O 1.21280 * 119.99669 * 6.33312 * 7 5 4 9 9 N 1.34772 * 120.00061 * 186.33421 * 7 5 4 10 10 C 1.46496 * 120.00005 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.47463 * 34.99831 * 10 9 7 12 12 C 1.53002 * 109.47218 * 154.99678 * 10 9 7 13 13 C 1.50701 * 109.47296 * 294.99819 * 12 10 9 14 14 H 1.08009 * 119.99630 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00368 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46863 * 60.00542 * 17 15 13 19 19 H 1.48503 * 109.47197 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47514 * 300.00127 * 17 15 13 21 21 C 1.50698 * 109.46952 * 274.99442 * 10 9 7 22 22 C 1.38230 * 120.00027 * 319.72912 * 21 10 9 23 23 C 1.38238 * 119.99959 * 179.77056 * 22 21 10 24 24 C 1.38235 * 119.99912 * 0.47880 * 23 22 21 25 25 C 1.38235 * 120.00000 * 359.79349 * 24 23 22 26 26 C 1.38232 * 119.99761 * 140.00077 * 21 10 9 27 27 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 28 28 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 29 29 O 1.21276 * 124.94635 * 0.38997 * 28 3 2 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 36 36 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 37 37 H 0.97005 * 119.99719 * 359.97438 * 9 7 5 38 38 H 1.09004 * 109.47204 * 54.99574 * 12 10 9 39 39 H 1.09002 * 109.47253 * 174.99909 * 12 10 9 40 40 H 0.96998 * 120.00092 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.00168 * 359.97438 * 22 21 10 42 42 H 1.08000 * 120.00055 * 180.25392 * 23 22 21 43 43 H 1.08001 * 120.00098 * 179.77732 * 24 23 22 44 44 H 1.08005 * 119.99830 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00447 * 0.02562 * 26 21 10 46 46 H 1.09005 * 110.48385 * 216.31096 * 27 5 4 47 47 H 1.08995 * 110.60048 * 93.72728 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 1 1.3778 4.1128 -0.8440 7 6 3.4027 4.3996 -1.5122 8 8 3.9854 3.8721 -2.4358 9 7 3.6943 5.6699 -1.1688 10 6 4.7146 6.4137 -1.9116 11 1 4.6827 6.1242 -2.9619 12 6 4.4432 7.9143 -1.7877 13 6 3.1374 8.2461 -2.4630 14 1 2.5592 7.4647 -2.9339 15 6 2.6809 9.5470 -2.4798 16 7 3.3852 10.4984 -1.9068 17 14 1.0627 9.9582 -3.3175 18 1 -0.0372 9.2004 -2.6685 19 1 0.7985 11.4145 -3.1961 20 1 1.1400 9.5866 -4.7531 21 6 6.0758 6.1010 -1.3454 22 6 6.2467 5.9894 0.0217 23 6 7.4944 5.6979 0.5407 24 6 8.5730 5.5278 -0.3069 25 6 8.4032 5.6450 -1.6737 26 6 7.1545 5.9314 -2.1930 27 6 2.7508 3.4819 0.7379 28 6 2.2716 2.0960 1.1099 29 8 2.1355 1.6893 2.2443 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.2575 1.8612 -1.6381 36 1 1.5020 2.0235 -1.9416 37 1 3.2279 6.0918 -0.4302 38 1 4.3869 8.1876 -0.7340 39 1 5.2504 8.4702 -2.2647 40 1 3.0643 11.4136 -1.9189 41 1 5.4049 6.1266 0.6842 42 1 7.6271 5.6066 1.6086 43 1 9.5485 5.3037 0.0988 44 1 9.2461 5.5126 -2.3359 45 1 7.0220 6.0234 -3.2609 46 1 2.2497 4.2349 1.3463 47 1 3.8319 3.5560 0.8549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153464582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:54 Heat of formation + Delta-G solvation = -56.683011 kcal Electronic energy + Delta-G solvation = -28431.227086 eV Core-core repulsion = 24578.197355 eV Total energy + Delta-G solvation = -3853.029731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85325 -39.50801 -38.44273 -36.41501 -35.26939 -34.05918 -32.78756 -31.27464 -30.51377 -29.77041 -28.76057 -27.77622 -25.22411 -23.91796 -22.88581 -22.32192 -21.97814 -20.22752 -19.72317 -19.44827 -17.50033 -17.06269 -16.75051 -16.21279 -15.88055 -15.68974 -15.05836 -14.96857 -14.57702 -14.54304 -14.20943 -14.00900 -13.87980 -13.53029 -13.31647 -13.08621 -12.97506 -12.68966 -12.54354 -12.47569 -12.16281 -12.14345 -11.74971 -11.51471 -11.46242 -11.26979 -11.18392 -10.96868 -10.76776 -10.68014 -10.52134 -10.02819 -9.83989 -9.49805 -9.34674 -8.87643 -8.60883 -8.52514 -8.49798 -8.23268 -6.13818 -4.17998 1.73370 1.76171 2.46593 2.78778 2.90442 3.24525 3.30694 3.32496 3.53320 4.14232 4.19482 4.29396 4.35181 4.74388 4.78489 4.87185 4.94485 5.12896 5.20941 5.22917 5.23275 5.26669 5.33570 5.34893 5.43491 5.48693 5.52321 5.58726 5.66931 5.82804 5.86156 5.89674 5.92204 6.11115 6.30722 6.37126 6.39057 6.51886 6.79253 6.80831 6.81978 6.94486 7.04998 7.36146 7.43536 7.55043 7.82045 7.97969 8.04050 8.19849 8.58781 8.87548 9.47436 10.96600 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.004219 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.312685 B = 6634.284186 C = 9018.223501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.119 3.881 5 C -0.124 4.124 6 H 0.119 0.881 7 C 0.523 3.477 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.184 3.816 11 H 0.088 0.912 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.072 4.072 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.146 4.146 28 C 0.522 3.478 29 O -0.534 6.534 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.403 0.597 38 H 0.025 0.975 39 H 0.035 0.965 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -15.413 3.436 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.004 4.004 5 C -0.146 4.146 6 H 0.137 0.863 7 C 0.308 3.692 8 O -0.423 6.423 9 N -0.342 5.342 10 C 0.080 3.920 11 H 0.106 0.894 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.073 4.073 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.187 4.187 28 C 0.309 3.691 29 O -0.411 6.411 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.238 0.762 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.130 0.870 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.995 -15.865 3.396 16.255 hybrid contribution -1.139 0.701 -0.196 1.352 sum -0.144 -15.165 3.200 15.499 Atomic orbital electron populations 1.22163 0.95728 1.02294 1.02603 1.21331 0.94375 0.81122 1.03171 1.48384 1.65673 1.13979 1.07413 1.22010 1.03312 0.88386 0.86688 1.22291 1.00950 0.96349 0.95022 0.86294 1.19911 0.82940 0.82364 0.84024 1.90679 1.52807 1.68716 1.30066 1.45955 1.40134 1.12353 1.35807 1.20280 0.81400 0.95167 0.95145 0.89391 1.19391 0.97732 0.85951 0.98250 1.21083 1.05456 0.93404 1.36193 0.92430 1.24981 0.97261 0.96450 0.95345 1.69941 1.38250 1.00992 1.43756 0.86660 0.83898 0.77270 0.80192 1.20253 1.21297 1.20206 1.20519 0.96467 0.96633 0.93674 1.20912 0.97038 0.99916 0.94862 1.21058 0.93164 1.00780 0.99251 1.21008 0.98423 1.02072 0.93745 1.21050 0.97058 1.00716 0.95227 1.21017 0.92461 0.99389 0.99796 1.22360 1.04479 0.96379 0.95449 1.20803 0.76272 0.87648 0.84344 1.90714 1.53724 1.75591 1.21106 0.92271 0.92208 0.91459 0.90057 0.90227 0.89032 0.89853 0.76249 0.95677 0.94730 0.92746 0.86518 0.86692 0.86839 0.86611 0.86180 0.87018 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.98 16 2 C 0.12 1.10 6.65 -4.04 -0.03 1.07 16 3 N -0.62 -6.84 2.93 -172.30 -0.51 -7.35 16 4 C 0.12 1.27 6.65 -3.03 -0.02 1.25 16 5 C -0.12 -1.41 3.56 -90.04 -0.32 -1.73 16 6 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 7 C 0.52 7.92 7.03 -10.99 -0.08 7.84 16 8 O -0.54 -9.96 15.23 5.56 0.08 -9.88 16 9 N -0.69 -11.09 3.99 -54.94 -0.22 -11.31 16 10 C 0.18 3.47 2.11 -69.08 -0.15 3.32 16 11 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 12 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 13 C -0.52 -13.20 8.84 -34.44 -0.30 -13.51 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 17 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 C -0.07 -1.25 4.91 -104.63 -0.51 -1.76 16 22 C -0.11 -1.72 9.32 -39.58 -0.37 -2.09 16 23 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 24 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 26 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 27 C -0.15 -1.61 6.36 -26.74 -0.17 -1.78 16 28 C 0.52 6.81 8.02 -10.86 -0.09 6.72 16 29 O -0.53 -8.79 17.59 5.56 0.10 -8.69 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.10 7.07 -51.93 -0.37 0.74 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 5.88 8.60 -40.82 -0.35 5.53 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 1.69 7.73 -52.49 -0.41 1.29 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 45 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 46 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -31.85 395.56 -9.69 -41.53 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.37 Total: 6.95 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.45 Total: -8.41 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.01 Total: -42.80 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.85 -9.69 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.148 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds