Wall clock time and date at job start Tue Mar 31 2020 16:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 H 1.09002 * 111.19115 * 267.59212 * 5 4 3 7 7 C 1.50703 * 110.85550 * 143.78754 * 5 4 3 8 8 O 1.21280 * 119.99669 * 6.33312 * 7 5 4 9 9 N 1.34772 * 120.00061 * 186.33421 * 7 5 4 10 10 C 1.46496 * 120.00005 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.47463 * 34.99831 * 10 9 7 12 12 C 1.53002 * 109.47218 * 154.99678 * 10 9 7 13 13 C 1.50701 * 109.47296 * 294.99819 * 12 10 9 14 14 H 1.08009 * 119.99630 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00368 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46863 * 60.00542 * 17 15 13 19 19 H 1.48503 * 109.47197 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47514 * 300.00127 * 17 15 13 21 21 C 1.50698 * 109.46952 * 274.99442 * 10 9 7 22 22 C 1.38230 * 120.00027 * 319.72912 * 21 10 9 23 23 C 1.38238 * 119.99959 * 179.77056 * 22 21 10 24 24 C 1.38235 * 119.99912 * 0.47880 * 23 22 21 25 25 C 1.38235 * 120.00000 * 359.79349 * 24 23 22 26 26 C 1.38232 * 119.99761 * 140.00077 * 21 10 9 27 27 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 28 28 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 29 29 O 1.21276 * 124.94635 * 0.38997 * 28 3 2 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 36 36 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 37 37 H 0.97005 * 119.99719 * 359.97438 * 9 7 5 38 38 H 1.09004 * 109.47204 * 54.99574 * 12 10 9 39 39 H 1.09002 * 109.47253 * 174.99909 * 12 10 9 40 40 H 0.96998 * 120.00092 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.00168 * 359.97438 * 22 21 10 42 42 H 1.08000 * 120.00055 * 180.25392 * 23 22 21 43 43 H 1.08001 * 120.00098 * 179.77732 * 24 23 22 44 44 H 1.08005 * 119.99830 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00447 * 0.02562 * 26 21 10 46 46 H 1.09005 * 110.48385 * 216.31096 * 27 5 4 47 47 H 1.08995 * 110.60048 * 93.72728 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 1 1.3778 4.1128 -0.8440 7 6 3.4027 4.3996 -1.5122 8 8 3.9854 3.8721 -2.4358 9 7 3.6943 5.6699 -1.1688 10 6 4.7146 6.4137 -1.9116 11 1 4.6827 6.1242 -2.9619 12 6 4.4432 7.9143 -1.7877 13 6 3.1374 8.2461 -2.4630 14 1 2.5592 7.4647 -2.9339 15 6 2.6809 9.5470 -2.4798 16 7 3.3852 10.4984 -1.9068 17 14 1.0627 9.9582 -3.3175 18 1 -0.0372 9.2004 -2.6685 19 1 0.7985 11.4145 -3.1961 20 1 1.1400 9.5866 -4.7531 21 6 6.0758 6.1010 -1.3454 22 6 6.2467 5.9894 0.0217 23 6 7.4944 5.6979 0.5407 24 6 8.5730 5.5278 -0.3069 25 6 8.4032 5.6450 -1.6737 26 6 7.1545 5.9314 -2.1930 27 6 2.7508 3.4819 0.7379 28 6 2.2716 2.0960 1.1099 29 8 2.1355 1.6893 2.2443 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.2575 1.8612 -1.6381 36 1 1.5020 2.0235 -1.9416 37 1 3.2279 6.0918 -0.4302 38 1 4.3869 8.1876 -0.7340 39 1 5.2504 8.4702 -2.2647 40 1 3.0643 11.4136 -1.9189 41 1 5.4049 6.1266 0.6842 42 1 7.6271 5.6066 1.6086 43 1 9.5485 5.3037 0.0988 44 1 9.2461 5.5126 -2.3359 45 1 7.0220 6.0234 -3.2609 46 1 2.2497 4.2349 1.3463 47 1 3.8319 3.5560 0.8549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153464582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:54 Heat of formation + Delta-G solvation = -74.735543 kcal Electronic energy + Delta-G solvation = -28432.009903 eV Core-core repulsion = 24578.197355 eV Total energy + Delta-G solvation = -3853.812548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89900 -40.73280 -39.64168 -37.49072 -36.72258 -34.97631 -34.63556 -32.54195 -31.67801 -30.74109 -30.32923 -28.73074 -26.82237 -24.93036 -23.85246 -23.74901 -23.26370 -21.52713 -20.99036 -20.39497 -18.78106 -18.33532 -17.99235 -17.62842 -17.01577 -16.88861 -16.45776 -16.21349 -16.07165 -15.66212 -15.27731 -15.03182 -14.74404 -14.69347 -14.41047 -14.27100 -14.20768 -14.11711 -13.83436 -13.64920 -13.42025 -13.30410 -12.88569 -12.85565 -12.65081 -12.48287 -12.42105 -12.38028 -12.12834 -12.00584 -11.85000 -11.55765 -11.30850 -11.13312 -10.72840 -10.52783 -9.96392 -9.78424 -9.73227 -9.49884 -8.16967 -6.27068 0.53150 0.58075 1.43529 1.45123 1.46124 1.52413 1.67299 1.90802 2.33758 2.42791 2.98668 3.17144 3.20915 3.35726 3.77995 3.86547 4.03407 4.06410 4.10911 4.22169 4.23828 4.25003 4.34435 4.47466 4.50175 4.55290 4.59326 4.68500 4.75532 4.79055 4.81973 4.83455 4.94044 4.94428 5.15308 5.22401 5.27170 5.31307 5.47435 5.53871 5.63107 5.63591 5.66835 5.81395 5.92786 6.02067 6.18303 6.23013 6.70224 6.86341 7.06019 7.33483 7.42347 8.93530 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.004219 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.312685 B = 6634.284186 C = 9018.223501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.123 3.877 5 C -0.112 4.112 6 H 0.142 0.858 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.692 5.692 10 C 0.201 3.799 11 H 0.063 0.937 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.011 3.989 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.132 4.132 27 C -0.139 4.139 28 C 0.516 3.484 29 O -0.574 6.574 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.410 0.590 38 H 0.012 0.988 39 H 0.001 0.999 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -16.714 3.706 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.347 5.347 4 C 0.000 4.000 5 C -0.134 4.134 6 H 0.159 0.841 7 C 0.312 3.688 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.096 3.904 11 H 0.081 0.919 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.188 4.188 16 N -0.568 5.568 17 Si 0.780 3.220 18 H -0.188 1.188 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.097 4.097 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.180 4.180 28 C 0.304 3.696 29 O -0.454 6.454 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.030 0.970 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.132 0.868 46 H 0.147 0.853 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.519 -17.192 3.651 17.583 hybrid contribution -0.898 1.059 -0.305 1.422 sum -0.379 -16.132 3.345 16.480 Atomic orbital electron populations 1.22106 0.94733 1.03386 1.01878 1.21557 0.95184 0.80096 1.03850 1.48504 1.64647 1.14641 1.06930 1.22004 1.03543 0.87699 0.86752 1.22231 1.00307 0.96341 0.94518 0.84074 1.20452 0.82978 0.81786 0.83613 1.90667 1.54100 1.69250 1.31670 1.45845 1.39776 1.12756 1.35717 1.19720 0.83494 0.92735 0.94447 0.91922 1.19135 0.95724 0.88573 0.96598 1.21402 1.06097 0.93450 1.35625 0.92297 1.25768 1.00505 0.96471 0.96018 1.70065 1.40035 1.01280 1.45385 0.85667 0.80315 0.76936 0.79113 1.18804 1.21393 1.20049 1.20433 0.95694 0.98788 0.94755 1.21084 0.98384 1.00211 0.94197 1.21433 0.92481 0.99587 1.00914 1.21450 0.99788 1.00355 0.93295 1.21376 0.96804 0.99717 0.96349 1.21183 0.93549 1.00633 0.99706 1.22341 1.04509 0.95866 0.95237 1.21076 0.75937 0.88394 0.84145 1.90692 1.55647 1.76479 1.22604 0.91609 0.94170 0.89544 0.91004 0.87943 0.90257 0.87706 0.75391 0.96957 0.98068 0.92846 0.85831 0.83904 0.83478 0.84056 0.86805 0.85321 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.11 1.86 6.65 86.38 0.57 2.44 16 3 N -0.61 -12.61 2.93 -817.64 -2.40 -15.01 16 4 C 0.12 2.40 6.65 86.90 0.58 2.98 16 5 C -0.11 -2.35 3.56 -10.42 -0.04 -2.39 16 6 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 7 C 0.53 15.62 7.03 87.66 0.62 16.24 16 8 O -0.58 -21.16 15.23 -3.03 -0.05 -21.21 16 9 N -0.69 -22.19 3.99 -446.11 -1.78 -23.97 16 10 C 0.20 7.86 2.11 44.25 0.09 7.95 16 11 H 0.06 2.74 7.44 -2.39 -0.02 2.72 16 12 C 0.04 1.76 4.49 29.85 0.13 1.90 16 13 C -0.53 -27.09 8.84 25.60 0.23 -26.86 16 14 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 15 C 0.01 0.59 5.46 84.65 0.46 1.05 16 16 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 17 Si 0.95 41.69 29.54 68.60 2.03 43.71 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.10 -3.40 4.91 -19.87 -0.10 -3.49 16 22 C -0.12 -3.75 9.32 22.27 0.21 -3.54 16 23 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 24 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 25 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.13 -4.45 9.67 22.27 0.22 -4.24 16 27 C -0.14 -2.86 6.36 30.59 0.19 -2.67 16 28 C 0.52 12.96 8.02 87.90 0.71 13.66 16 29 O -0.57 -18.72 17.59 -3.02 -0.05 -18.78 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.81 7.07 -2.38 -0.02 1.80 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 11.84 8.60 -92.70 -0.80 11.04 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.12 3.54 7.73 -2.91 -0.02 3.52 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.11 3.81 8.04 -2.91 -0.02 3.79 16 46 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.11 2.30 7.89 -2.39 -0.02 2.28 16 Total: -1.00 -70.46 395.56 3.48 -66.98 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.17 Total: 28.71 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.28 Total: -7.89 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -3.89 Total: -91.53 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.98 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -70.46 3.48 -66.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.754 kcal (2) G-P(sol) polarization free energy of solvation -70.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds