Wall clock time and date at job start Tue Mar 31 2020 16:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47132 * 2 1 4 4 C 1.46768 * 124.34672 * 89.99765 * 3 2 1 5 5 C 1.54482 * 105.46786 * 196.99885 * 4 3 2 6 6 H 1.09001 * 110.97079 * 92.74642 * 5 4 3 7 7 C 1.50703 * 110.96582 * 216.46733 * 5 4 3 8 8 O 1.21285 * 119.99803 * 0.02562 * 7 5 4 9 9 N 1.34771 * 120.00221 * 180.02562 * 7 5 4 10 10 C 1.46495 * 120.00262 * 179.97438 * 9 7 5 11 11 H 1.09000 * 109.47236 * 34.99729 * 10 9 7 12 12 C 1.53006 * 109.47168 * 155.00062 * 10 9 7 13 13 C 1.50699 * 109.46866 * 294.99936 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 10 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 C 1.50698 * 109.47239 * 274.99907 * 10 9 7 22 22 C 1.38241 * 120.00018 * 319.72429 * 21 10 9 23 23 C 1.38230 * 120.00097 * 179.76592 * 22 21 10 24 24 C 1.38243 * 119.99892 * 0.48541 * 23 22 21 25 25 C 1.38237 * 119.99830 * 359.79451 * 24 23 22 26 26 C 1.38229 * 119.99906 * 359.95073 * 25 24 23 27 27 C 1.54629 * 101.76793 * 334.58596 * 5 4 3 28 28 C 1.34411 * 124.34935 * 269.97951 * 3 2 1 29 29 O 1.21284 * 124.94223 * 359.61103 * 28 3 2 30 30 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47271 * 299.99763 * 1 2 3 32 32 H 1.09001 * 109.47251 * 60.00090 * 1 2 3 33 33 H 1.08994 * 109.47238 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47251 * 119.99909 * 2 1 3 35 35 H 1.09001 * 110.24221 * 77.99842 * 4 3 2 36 36 H 1.09000 * 110.24762 * 316.00106 * 4 3 2 37 37 H 0.97007 * 119.99885 * 359.97438 * 9 7 5 38 38 H 1.08993 * 109.46955 * 55.00154 * 12 10 9 39 39 H 1.09000 * 109.47050 * 174.99983 * 12 10 9 40 40 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 41 41 H 1.07998 * 119.99440 * 0.02562 * 22 21 10 42 42 H 1.07994 * 120.00211 * 180.25918 * 23 22 21 43 43 H 1.08002 * 119.99673 * 179.77019 * 24 23 22 44 44 H 1.08002 * 119.99664 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.99502 * 179.97438 * 26 25 24 46 46 H 1.08994 * 110.48420 * 143.47860 * 27 5 4 47 47 H 1.09001 * 110.48045 * 266.12391 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2118 5 6 2.3533 3.6346 0.7486 6 1 1.3788 4.1132 0.8451 7 6 3.4042 4.3984 1.5124 8 8 4.0650 3.8374 2.3606 9 7 3.6096 5.7049 1.2529 10 6 4.6307 6.4475 1.9957 11 1 5.4756 5.7919 2.2064 12 6 5.1049 7.6380 1.1596 13 6 5.7996 7.1361 -0.0800 14 1 5.8939 6.0744 -0.2538 15 6 6.3158 8.0324 -0.9916 16 7 6.2014 9.3254 -0.7797 17 14 7.1764 7.4105 -2.5285 18 1 6.2310 6.5903 -3.3276 19 1 7.6367 8.5658 -3.3400 20 1 8.3452 6.5809 -2.1400 21 6 4.0460 6.9455 3.2923 22 6 2.7567 7.4434 3.3230 23 6 2.2186 7.8957 4.5133 24 6 2.9734 7.8595 5.6709 25 6 4.2647 7.3671 5.6391 26 6 4.8008 6.9099 4.4498 27 6 2.7510 3.4820 -0.7378 28 6 2.2715 2.0962 -1.1097 29 8 2.1353 1.6895 -2.2442 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2498 1.8636 1.6432 36 1 1.4930 2.0268 1.9382 37 1 3.0813 6.1535 0.5742 38 1 4.2467 8.2462 0.8742 39 1 5.7984 8.2406 1.7461 40 1 6.5642 9.9560 -1.4213 41 1 2.1684 7.4750 2.4179 42 1 1.2100 8.2807 4.5381 43 1 2.5542 8.2164 6.6001 44 1 4.8544 7.3392 6.5434 45 1 5.8098 6.5255 4.4249 46 1 2.2500 4.2350 -1.3460 47 1 3.8325 3.5550 -0.8527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153464689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:58 Heat of formation + Delta-G solvation = -56.402263 kcal Electronic energy + Delta-G solvation = -28362.612440 eV Core-core repulsion = 24509.594883 eV Total energy + Delta-G solvation = -3853.017557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81236 -39.50297 -38.44249 -36.36684 -35.26856 -34.01416 -32.77881 -31.27531 -30.52947 -29.73856 -28.77390 -27.73556 -25.21863 -23.90318 -22.82862 -22.33790 -21.99008 -20.19810 -19.73697 -19.40554 -17.40037 -17.10705 -16.77153 -16.21061 -15.84330 -15.65319 -15.04804 -14.94982 -14.58256 -14.46703 -14.15798 -14.00867 -13.85114 -13.50497 -13.28285 -13.10496 -13.03641 -12.62679 -12.55918 -12.44380 -12.15438 -12.12917 -11.68184 -11.52326 -11.42498 -11.24008 -11.17472 -10.96343 -10.76118 -10.66571 -10.51478 -9.97028 -9.83270 -9.49436 -9.33216 -8.83338 -8.61400 -8.53141 -8.48240 -8.24214 -6.12621 -4.16807 1.72068 1.74895 2.53772 2.81960 2.90612 3.27855 3.33156 3.36186 3.53946 4.15797 4.22419 4.35364 4.37837 4.77555 4.80213 4.91242 4.96870 5.14334 5.18209 5.21914 5.23394 5.25754 5.33914 5.35955 5.47846 5.49905 5.57128 5.61453 5.77352 5.84897 5.85653 5.88917 5.93021 6.10557 6.29694 6.37601 6.42050 6.51521 6.78767 6.79445 6.80821 6.99315 7.04324 7.34862 7.43921 7.55198 7.83214 7.98081 8.10534 8.20704 8.58778 8.88699 9.48986 10.97726 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.004574 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.814458 B = 6120.565641 C = 9178.716728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.118 3.882 5 C -0.123 4.123 6 H 0.114 0.886 7 C 0.523 3.477 8 O -0.544 6.544 9 N -0.694 5.694 10 C 0.184 3.816 11 H 0.088 0.912 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.145 4.145 28 C 0.521 3.479 29 O -0.533 6.533 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.403 0.597 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 -10.289 8.211 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.005 4.005 5 C -0.145 4.145 6 H 0.132 0.868 7 C 0.307 3.693 8 O -0.423 6.423 9 N -0.342 5.342 10 C 0.080 3.920 11 H 0.106 0.894 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.073 4.073 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.126 4.126 27 C -0.185 4.185 28 C 0.309 3.691 29 O -0.410 6.410 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.238 0.762 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.087 -10.793 8.132 17.480 hybrid contribution 0.214 0.143 -1.094 1.124 sum -10.873 -10.650 7.038 16.768 Atomic orbital electron populations 1.22162 0.95815 1.02254 1.02505 1.21324 0.94284 0.81205 1.03192 1.48375 1.65948 1.13883 1.07381 1.21975 1.03314 0.88458 0.86722 1.22224 1.00441 0.96369 0.95475 0.86844 1.19920 0.83725 0.82601 0.83044 1.90677 1.48842 1.68667 1.34074 1.45948 1.39001 1.09273 1.40000 1.20285 0.88804 0.95384 0.87547 0.89407 1.19388 0.97010 0.90852 0.94044 1.21069 1.37046 0.92940 1.05054 0.92440 1.24969 0.95943 0.94804 0.98223 1.69942 1.45670 1.00959 1.36396 0.86687 0.80223 0.78311 0.83019 1.20076 1.21288 1.20206 1.20527 0.94184 0.96775 0.95776 1.20907 0.95418 0.98745 0.97596 1.21045 0.99553 1.00652 0.93053 1.21007 0.94907 1.01387 0.97970 1.21048 0.95653 0.99633 0.97722 1.21021 0.99904 0.99605 0.92109 1.22359 1.05070 0.96144 0.94961 1.20850 0.76179 0.87716 0.84330 1.90718 1.53561 1.75574 1.21116 0.91487 0.92369 0.92214 0.90035 0.90265 0.88873 0.90075 0.76245 0.95695 0.94748 0.92754 0.86539 0.86731 0.86841 0.86603 0.86176 0.86924 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 1.14 6.65 -4.04 -0.03 1.11 16 3 N -0.62 -7.17 2.93 -172.41 -0.51 -7.67 16 4 C 0.12 1.28 6.71 -3.12 -0.02 1.26 16 5 C -0.12 -1.40 3.54 -90.14 -0.32 -1.72 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.52 7.90 7.02 -10.99 -0.08 7.82 16 8 O -0.54 -9.96 15.17 5.55 0.08 -9.88 16 9 N -0.69 -11.06 4.04 -54.93 -0.22 -11.28 16 10 C 0.18 3.46 2.11 -69.08 -0.15 3.31 16 11 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 12 C 0.02 0.55 4.49 -27.88 -0.13 0.43 16 13 C -0.52 -13.24 8.84 -34.44 -0.30 -13.55 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 17 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.07 -1.23 4.91 -104.62 -0.51 -1.75 16 22 C -0.11 -1.68 9.32 -39.58 -0.37 -2.05 16 23 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 24 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 26 C -0.11 -1.77 9.67 -39.59 -0.38 -2.15 16 27 C -0.14 -1.81 6.41 -26.74 -0.17 -1.98 16 28 C 0.52 7.35 8.02 -10.86 -0.09 7.26 16 29 O -0.53 -9.40 17.59 5.55 0.10 -9.31 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.15 6.96 -51.93 -0.36 0.79 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 5.85 8.60 -40.82 -0.35 5.50 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.66 7.73 -52.49 -0.41 1.25 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.89 8.04 -52.48 -0.42 1.47 16 46 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.11 1.59 7.89 -51.93 -0.41 1.18 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -32.09 395.49 -9.69 -41.78 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.36 Total: 6.83 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.45 Total: -7.85 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.01 Total: -43.21 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.09 -9.69 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.626 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds