Wall clock time and date at job start Tue Mar 31 2020 16:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47132 * 2 1 4 4 C 1.46768 * 124.34672 * 89.99765 * 3 2 1 5 5 C 1.54482 * 105.46786 * 196.99885 * 4 3 2 6 6 H 1.09001 * 110.97079 * 92.74642 * 5 4 3 7 7 C 1.50703 * 110.96582 * 216.46733 * 5 4 3 8 8 O 1.21285 * 119.99803 * 0.02562 * 7 5 4 9 9 N 1.34771 * 120.00221 * 180.02562 * 7 5 4 10 10 C 1.46495 * 120.00262 * 179.97438 * 9 7 5 11 11 H 1.09000 * 109.47236 * 34.99729 * 10 9 7 12 12 C 1.53006 * 109.47168 * 155.00062 * 10 9 7 13 13 C 1.50699 * 109.46866 * 294.99936 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 10 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 C 1.50698 * 109.47239 * 274.99907 * 10 9 7 22 22 C 1.38241 * 120.00018 * 319.72429 * 21 10 9 23 23 C 1.38230 * 120.00097 * 179.76592 * 22 21 10 24 24 C 1.38243 * 119.99892 * 0.48541 * 23 22 21 25 25 C 1.38237 * 119.99830 * 359.79451 * 24 23 22 26 26 C 1.38229 * 119.99906 * 359.95073 * 25 24 23 27 27 C 1.54629 * 101.76793 * 334.58596 * 5 4 3 28 28 C 1.34411 * 124.34935 * 269.97951 * 3 2 1 29 29 O 1.21284 * 124.94223 * 359.61103 * 28 3 2 30 30 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47271 * 299.99763 * 1 2 3 32 32 H 1.09001 * 109.47251 * 60.00090 * 1 2 3 33 33 H 1.08994 * 109.47238 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47251 * 119.99909 * 2 1 3 35 35 H 1.09001 * 110.24221 * 77.99842 * 4 3 2 36 36 H 1.09000 * 110.24762 * 316.00106 * 4 3 2 37 37 H 0.97007 * 119.99885 * 359.97438 * 9 7 5 38 38 H 1.08993 * 109.46955 * 55.00154 * 12 10 9 39 39 H 1.09000 * 109.47050 * 174.99983 * 12 10 9 40 40 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 41 41 H 1.07998 * 119.99440 * 0.02562 * 22 21 10 42 42 H 1.07994 * 120.00211 * 180.25918 * 23 22 21 43 43 H 1.08002 * 119.99673 * 179.77019 * 24 23 22 44 44 H 1.08002 * 119.99664 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.99502 * 179.97438 * 26 25 24 46 46 H 1.08994 * 110.48420 * 143.47860 * 27 5 4 47 47 H 1.09001 * 110.48045 * 266.12391 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2118 5 6 2.3533 3.6346 0.7486 6 1 1.3788 4.1132 0.8451 7 6 3.4042 4.3984 1.5124 8 8 4.0650 3.8374 2.3606 9 7 3.6096 5.7049 1.2529 10 6 4.6307 6.4475 1.9957 11 1 5.4756 5.7919 2.2064 12 6 5.1049 7.6380 1.1596 13 6 5.7996 7.1361 -0.0800 14 1 5.8939 6.0744 -0.2538 15 6 6.3158 8.0324 -0.9916 16 7 6.2014 9.3254 -0.7797 17 14 7.1764 7.4105 -2.5285 18 1 6.2310 6.5903 -3.3276 19 1 7.6367 8.5658 -3.3400 20 1 8.3452 6.5809 -2.1400 21 6 4.0460 6.9455 3.2923 22 6 2.7567 7.4434 3.3230 23 6 2.2186 7.8957 4.5133 24 6 2.9734 7.8595 5.6709 25 6 4.2647 7.3671 5.6391 26 6 4.8008 6.9099 4.4498 27 6 2.7510 3.4820 -0.7378 28 6 2.2715 2.0962 -1.1097 29 8 2.1353 1.6895 -2.2442 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2498 1.8636 1.6432 36 1 1.4930 2.0268 1.9382 37 1 3.0813 6.1535 0.5742 38 1 4.2467 8.2462 0.8742 39 1 5.7984 8.2406 1.7461 40 1 6.5642 9.9560 -1.4213 41 1 2.1684 7.4750 2.4179 42 1 1.2100 8.2807 4.5381 43 1 2.5542 8.2164 6.6001 44 1 4.8544 7.3392 6.5434 45 1 5.8098 6.5255 4.4249 46 1 2.2500 4.2350 -1.3460 47 1 3.8325 3.5550 -0.8527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153464689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:57 Heat of formation + Delta-G solvation = -74.916579 kcal Electronic energy + Delta-G solvation = -28363.415281 eV Core-core repulsion = 24509.594883 eV Total energy + Delta-G solvation = -3853.820398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90281 -40.73525 -39.63360 -37.50367 -36.72143 -34.95762 -34.65634 -32.53804 -31.65936 -30.71876 -30.35095 -28.75442 -26.82655 -24.92787 -23.85244 -23.72181 -23.26520 -21.49624 -21.00503 -20.41023 -18.69904 -18.45430 -17.98833 -17.61456 -17.07616 -16.82068 -16.48011 -16.20096 -16.07396 -15.62211 -15.25452 -15.03277 -14.74716 -14.69378 -14.54622 -14.23670 -14.16082 -14.07913 -13.86506 -13.63499 -13.41685 -13.31067 -12.90557 -12.85293 -12.65097 -12.50499 -12.44552 -12.37026 -12.11714 -12.00199 -11.83432 -11.55947 -11.31831 -11.13904 -10.74210 -10.54206 -9.96318 -9.78077 -9.71138 -9.48122 -8.18937 -6.28169 0.55069 0.60384 1.41252 1.42453 1.44113 1.49352 1.66120 1.90237 2.33287 2.40496 3.00658 3.15626 3.21606 3.37667 3.80013 3.86311 4.01701 4.08109 4.11315 4.21721 4.25130 4.26264 4.36816 4.47601 4.49926 4.55741 4.59229 4.69779 4.76381 4.80975 4.82952 4.84120 4.94390 4.95504 5.16906 5.24521 5.27924 5.31420 5.46777 5.54563 5.64296 5.65416 5.68911 5.80559 5.94009 6.00517 6.18691 6.23775 6.70341 6.85071 7.04817 7.33618 7.41137 8.91506 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.004574 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.814458 B = 6120.565641 C = 9178.716728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.613 5.613 4 C 0.121 3.879 5 C -0.108 4.108 6 H 0.150 0.850 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.692 5.692 10 C 0.201 3.799 11 H 0.060 0.940 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.015 3.985 16 N -0.925 5.925 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.143 4.143 28 C 0.515 3.485 29 O -0.576 6.576 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.410 0.590 38 H 0.014 0.986 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.111 0.889 46 H 0.127 0.873 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -10.915 9.597 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.346 5.346 4 C -0.001 4.001 5 C -0.129 4.129 6 H 0.168 0.832 7 C 0.311 3.689 8 O -0.457 6.457 9 N -0.340 5.340 10 C 0.096 3.904 11 H 0.078 0.922 12 C 0.000 4.000 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.565 5.565 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.097 4.097 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.183 4.183 28 C 0.304 3.696 29 O -0.456 6.456 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.246 0.754 38 H 0.032 0.968 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.129 0.871 46 H 0.145 0.855 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.320 -11.440 9.541 19.983 hybrid contribution 0.920 0.324 -1.413 1.717 sum -12.399 -11.116 8.128 18.530 Atomic orbital electron populations 1.22098 0.94427 1.03427 1.02002 1.21573 0.95412 0.79998 1.03773 1.48493 1.64664 1.14595 1.06859 1.22023 1.03749 0.87665 0.86711 1.22192 1.00457 0.96529 0.93745 0.83231 1.20463 0.83835 0.81983 0.82628 1.90666 1.50208 1.69136 1.35706 1.45838 1.38390 1.09776 1.40043 1.19713 0.89097 0.93331 0.88300 0.92222 1.19132 0.95605 0.91892 0.93365 1.21379 1.36526 0.92816 1.05719 0.92597 1.25685 0.96754 0.94932 1.01002 1.70051 1.47004 1.01995 1.37477 0.85771 0.79229 0.77784 0.79900 1.19143 1.21105 1.20213 1.20410 0.95474 0.98819 0.95007 1.21088 0.94747 0.98898 0.99003 1.21437 1.00940 0.99501 0.92315 1.21461 0.94247 0.99812 0.99277 1.21367 0.96533 0.98781 0.97610 1.21167 0.99886 1.00919 0.93192 1.22328 1.04056 0.95969 0.95974 1.21057 0.75931 0.88372 0.84242 1.90690 1.55661 1.76479 1.22785 0.89559 0.91210 0.94234 0.91372 0.87806 0.90443 0.86981 0.75355 0.96758 0.98007 0.92806 0.85722 0.83623 0.83375 0.84150 0.87070 0.85518 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.24 71.98 0.74 -1.50 16 2 C 0.11 1.92 6.65 86.38 0.57 2.50 16 3 N -0.61 -13.22 2.93 -817.97 -2.40 -15.62 16 4 C 0.12 2.35 6.71 86.83 0.58 2.94 16 5 C -0.11 -2.24 3.54 -10.48 -0.04 -2.28 16 6 H 0.15 2.11 8.14 -2.39 -0.02 2.10 16 7 C 0.52 15.60 7.02 87.66 0.61 16.21 16 8 O -0.58 -21.24 15.17 -3.05 -0.05 -21.29 16 9 N -0.69 -22.15 4.04 -446.10 -1.80 -23.95 16 10 C 0.20 7.85 2.11 44.25 0.09 7.94 16 11 H 0.06 2.64 7.44 -2.39 -0.02 2.62 16 12 C 0.04 1.78 4.49 29.85 0.13 1.92 16 13 C -0.53 -27.38 8.84 25.60 0.23 -27.16 16 14 H 0.06 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.02 0.82 5.46 84.65 0.46 1.28 16 16 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 17 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C -0.10 -3.35 4.91 -19.87 -0.10 -3.45 16 22 C -0.12 -3.56 9.32 22.27 0.21 -3.35 16 23 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 24 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 25 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 26 C -0.13 -4.42 9.67 22.27 0.22 -4.21 16 27 C -0.14 -3.45 6.41 30.59 0.20 -3.25 16 28 C 0.52 14.26 8.02 87.90 0.71 14.97 16 29 O -0.58 -20.53 17.59 -3.04 -0.05 -20.58 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.36 7.92 -2.39 -0.02 1.34 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.82 6.96 -2.39 -0.02 1.81 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 11.78 8.60 -92.70 -0.80 10.99 16 38 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.12 3.39 7.73 -2.91 -0.02 3.37 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.11 3.72 8.04 -2.91 -0.02 3.70 16 46 H 0.13 2.67 8.14 -2.39 -0.02 2.66 16 47 H 0.10 2.71 7.89 -2.39 -0.02 2.69 16 Total: -1.00 -72.09 395.49 3.46 -68.63 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.17 Total: 26.81 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 5.29 Total: -6.23 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -3.92 Total: -92.31 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.10 Total: -41.87 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.09 3.46 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.289 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds