Wall clock time and date at job start Tue Mar 31 2020 16:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46698 * 2 1 4 4 C 1.46759 * 124.34780 * 269.98942 * 3 2 1 5 5 C 1.54485 * 105.47140 * 162.96577 * 4 3 2 6 6 H 1.08999 * 111.00589 * 267.28689 * 5 4 3 7 7 C 1.50702 * 110.96519 * 143.53662 * 5 4 3 8 8 O 1.21278 * 120.00502 * 6.17265 * 7 5 4 9 9 N 1.34779 * 119.99728 * 186.16847 * 7 5 4 10 10 C 1.46499 * 120.00310 * 179.97438 * 9 7 5 11 11 H 1.08994 * 109.47162 * 325.00948 * 10 9 7 12 12 C 1.52993 * 109.47517 * 205.00051 * 10 9 7 13 13 C 1.50707 * 109.47162 * 65.00472 * 12 10 9 14 14 H 1.07999 * 119.99547 * 359.97438 * 13 12 10 15 15 C 1.37868 * 120.00200 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99877 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00159 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47099 * 89.99631 * 17 15 13 19 19 H 1.48499 * 109.47412 * 209.99961 * 17 15 13 20 20 H 1.48506 * 109.46847 * 329.99819 * 17 15 13 21 21 C 1.50707 * 109.46610 * 85.00183 * 10 9 7 22 22 C 1.38238 * 119.99792 * 220.00359 * 21 10 9 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 10 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 39.98296 * 21 10 9 27 27 C 1.54632 * 101.76058 * 25.42141 * 5 4 3 28 28 C 1.34419 * 124.34684 * 89.97771 * 3 2 1 29 29 O 1.21277 * 124.94572 * 0.38824 * 28 3 2 30 30 H 1.09007 * 109.46877 * 60.00375 * 1 2 3 31 31 H 1.09005 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47233 * 300.00113 * 1 2 3 33 33 H 1.08995 * 109.47233 * 239.99887 * 2 1 3 34 34 H 1.08997 * 109.46824 * 119.99650 * 2 1 3 35 35 H 1.09001 * 110.24493 * 43.97170 * 4 3 2 36 36 H 1.08996 * 110.25164 * 281.96685 * 4 3 2 37 37 H 0.97001 * 119.99985 * 0.02562 * 9 7 5 38 38 H 1.09002 * 109.47166 * 184.99786 * 12 10 9 39 39 H 1.08997 * 109.47303 * 305.00404 * 12 10 9 40 40 H 0.97001 * 119.99689 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 10 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 10 46 46 H 1.08997 * 110.48513 * 93.88228 * 27 5 4 47 47 H 1.09007 * 110.48273 * 216.38712 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 2.3523 3.6346 -0.7488 6 1 1.3777 4.1131 -0.8452 7 6 3.4031 4.3989 -1.5123 8 8 3.9862 3.8709 -2.4353 9 7 3.6947 5.6693 -1.1693 10 6 4.7166 6.4121 -1.9110 11 1 5.5112 5.7313 -2.2158 12 6 5.2992 7.5088 -1.0174 13 6 6.0275 6.8783 0.1416 14 1 6.0701 5.8029 0.2319 15 6 6.6385 7.6742 1.0871 16 7 6.5863 8.9837 0.9773 17 14 7.5407 6.8926 2.5240 18 1 8.9615 6.6697 2.1543 19 1 7.4712 7.7945 3.7017 20 1 6.9063 5.5922 2.8584 21 6 4.0948 7.0375 -3.1332 22 6 4.7860 7.0509 -4.3303 23 6 4.2155 7.6240 -5.4514 24 6 2.9536 8.1833 -5.3756 25 6 2.2647 8.1747 -4.1772 26 6 2.8333 7.5974 -3.0572 27 6 2.7495 3.4824 0.7378 28 6 2.2706 2.0964 1.1098 29 8 2.1336 1.6900 2.2442 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4935 2.0262 -1.9385 36 1 3.2503 1.8641 -1.6426 37 1 3.2285 6.0915 -0.4308 38 1 5.9946 8.1174 -1.5956 39 1 4.4924 8.1375 -0.6408 40 1 7.0165 9.5437 1.6423 41 1 5.7718 6.6135 -4.3896 42 1 4.7557 7.6348 -6.3865 43 1 2.5078 8.6307 -6.2516 44 1 1.2806 8.6156 -4.1168 45 1 2.2930 7.5864 -2.1221 46 1 3.8309 3.5562 0.8532 47 1 2.2496 4.2368 1.3454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153464811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:02 Heat of formation + Delta-G solvation = -56.485585 kcal Electronic energy + Delta-G solvation = -28382.620209 eV Core-core repulsion = 24529.599038 eV Total energy + Delta-G solvation = -3853.021170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81027 -39.50128 -38.44088 -36.36418 -35.26832 -34.02564 -32.77758 -31.27337 -30.52779 -29.73017 -28.76921 -27.72634 -25.21584 -23.90151 -22.83238 -22.33566 -21.99245 -20.20907 -19.72706 -19.39805 -17.38433 -17.10705 -16.77409 -16.21312 -15.86074 -15.63795 -15.05052 -14.94860 -14.58162 -14.48056 -14.15917 -14.00284 -13.84223 -13.48115 -13.28233 -13.10869 -13.03248 -12.62566 -12.55723 -12.43014 -12.15666 -12.12909 -11.69466 -11.52043 -11.42742 -11.23723 -11.16692 -10.97168 -10.77417 -10.64247 -10.51975 -9.96645 -9.83305 -9.48560 -9.32114 -8.83652 -8.61169 -8.52866 -8.48673 -8.24180 -6.12798 -4.16907 1.72241 1.74977 2.54435 2.83297 2.90110 3.26457 3.34057 3.37015 3.54385 4.15872 4.21830 4.34869 4.37696 4.77858 4.80394 4.91352 4.97181 5.14665 5.18545 5.22027 5.23540 5.26001 5.34127 5.36498 5.48044 5.50344 5.56857 5.61760 5.77483 5.85062 5.86155 5.89040 5.93217 6.10644 6.29786 6.37719 6.42456 6.51575 6.78782 6.79580 6.80903 6.99706 7.04423 7.34977 7.44087 7.55192 7.83201 7.98126 8.11018 8.20601 8.58850 8.88828 9.49002 10.97568 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007659 B = 0.004604 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.148597 B = 6079.571903 C = 9119.775366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.120 3.880 5 C -0.123 4.123 6 H 0.115 0.885 7 C 0.523 3.477 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.184 3.816 11 H 0.088 0.912 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.108 4.108 27 C -0.147 4.147 28 C 0.522 3.478 29 O -0.533 6.533 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.403 0.597 38 H 0.034 0.966 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 -9.283 -8.179 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.003 4.003 5 C -0.145 4.145 6 H 0.133 0.867 7 C 0.307 3.693 8 O -0.423 6.423 9 N -0.343 5.343 10 C 0.080 3.920 11 H 0.106 0.894 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.073 4.073 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.187 4.187 28 C 0.309 3.691 29 O -0.409 6.409 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.237 0.763 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.841 -9.779 -8.141 17.382 hybrid contribution 0.293 0.047 1.079 1.119 sum -11.548 -9.733 -7.062 16.672 Atomic orbital electron populations 1.22163 0.95818 1.02252 1.02499 1.21322 0.94282 0.81208 1.03195 1.48378 1.65981 1.13884 1.07385 1.21951 1.03263 0.88430 0.86694 1.22231 1.00470 0.96376 0.95410 0.86729 1.19927 0.83172 0.82281 0.83893 1.90677 1.52595 1.68708 1.30285 1.45954 1.40432 1.12680 1.35195 1.20283 0.88334 0.94650 0.88739 0.89408 1.19394 0.96347 0.92040 0.93562 1.21104 1.34035 0.93029 1.07864 0.92394 1.24967 0.96166 0.94753 0.98068 1.69955 1.43993 1.03283 1.35709 0.86630 0.80320 0.79283 0.82041 1.20636 1.21209 1.19741 1.20529 0.94379 0.96860 0.95491 1.21023 0.99959 0.99420 0.92243 1.21048 0.95679 0.99089 0.98239 1.21004 0.95484 1.01177 0.97612 1.21046 0.99734 1.00262 0.93251 1.20907 0.95422 0.98191 0.98157 1.22387 1.05180 0.96155 0.95024 1.20844 0.76166 0.87720 0.84326 1.90716 1.53512 1.75594 1.21115 0.92371 0.91489 0.92217 0.90266 0.90033 0.90025 0.89034 0.76252 0.94739 0.95680 0.92818 0.86173 0.86604 0.86843 0.86728 0.86540 0.86636 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 1.15 6.65 -4.04 -0.03 1.12 16 3 N -0.62 -7.20 2.93 -172.42 -0.51 -7.71 16 4 C 0.12 1.30 6.66 -3.12 -0.02 1.28 16 5 C -0.12 -1.40 3.55 -90.13 -0.32 -1.72 16 6 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.52 7.91 7.03 -10.98 -0.08 7.84 16 8 O -0.54 -9.97 15.23 5.56 0.08 -9.88 16 9 N -0.69 -11.08 3.98 -54.93 -0.22 -11.30 16 10 C 0.18 3.46 2.12 -69.08 -0.15 3.32 16 11 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 12 C 0.02 0.54 4.49 -27.88 -0.13 0.42 16 13 C -0.52 -13.22 8.84 -34.44 -0.30 -13.53 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 17 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 21 C -0.07 -1.23 4.91 -104.62 -0.51 -1.75 16 22 C -0.11 -1.77 9.67 -39.58 -0.38 -2.15 16 23 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 24 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 26 C -0.11 -1.68 9.32 -39.58 -0.37 -2.05 16 27 C -0.15 -1.83 6.37 -26.74 -0.17 -2.00 16 28 C 0.52 7.37 8.02 -10.86 -0.09 7.29 16 29 O -0.53 -9.43 17.59 5.56 0.10 -9.33 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.14 7.06 -51.93 -0.37 0.77 16 37 H 0.40 5.86 8.60 -40.82 -0.35 5.51 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 1.89 8.04 -52.48 -0.42 1.47 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.66 7.72 -52.49 -0.41 1.26 16 46 H 0.12 1.62 7.89 -51.93 -0.41 1.21 16 47 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -32.13 395.52 -9.69 -41.82 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.37 Total: 6.81 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.45 Total: -7.82 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.01 Total: -43.25 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.13 -9.69 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.668 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds