Wall clock time and date at job start Tue Mar 31 2020 16:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46698 * 2 1 4 4 C 1.46759 * 124.34780 * 269.98942 * 3 2 1 5 5 C 1.54485 * 105.47140 * 162.96577 * 4 3 2 6 6 H 1.08999 * 111.00589 * 267.28689 * 5 4 3 7 7 C 1.50702 * 110.96519 * 143.53662 * 5 4 3 8 8 O 1.21278 * 120.00502 * 6.17265 * 7 5 4 9 9 N 1.34779 * 119.99728 * 186.16847 * 7 5 4 10 10 C 1.46499 * 120.00310 * 179.97438 * 9 7 5 11 11 H 1.08994 * 109.47162 * 325.00948 * 10 9 7 12 12 C 1.52993 * 109.47517 * 205.00051 * 10 9 7 13 13 C 1.50707 * 109.47162 * 65.00472 * 12 10 9 14 14 H 1.07999 * 119.99547 * 359.97438 * 13 12 10 15 15 C 1.37868 * 120.00200 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99877 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00159 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47099 * 89.99631 * 17 15 13 19 19 H 1.48499 * 109.47412 * 209.99961 * 17 15 13 20 20 H 1.48506 * 109.46847 * 329.99819 * 17 15 13 21 21 C 1.50707 * 109.46610 * 85.00183 * 10 9 7 22 22 C 1.38238 * 119.99792 * 220.00359 * 21 10 9 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 10 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 39.98296 * 21 10 9 27 27 C 1.54632 * 101.76058 * 25.42141 * 5 4 3 28 28 C 1.34419 * 124.34684 * 89.97771 * 3 2 1 29 29 O 1.21277 * 124.94572 * 0.38824 * 28 3 2 30 30 H 1.09007 * 109.46877 * 60.00375 * 1 2 3 31 31 H 1.09005 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47233 * 300.00113 * 1 2 3 33 33 H 1.08995 * 109.47233 * 239.99887 * 2 1 3 34 34 H 1.08997 * 109.46824 * 119.99650 * 2 1 3 35 35 H 1.09001 * 110.24493 * 43.97170 * 4 3 2 36 36 H 1.08996 * 110.25164 * 281.96685 * 4 3 2 37 37 H 0.97001 * 119.99985 * 0.02562 * 9 7 5 38 38 H 1.09002 * 109.47166 * 184.99786 * 12 10 9 39 39 H 1.08997 * 109.47303 * 305.00404 * 12 10 9 40 40 H 0.97001 * 119.99689 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 10 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 10 46 46 H 1.08997 * 110.48513 * 93.88228 * 27 5 4 47 47 H 1.09007 * 110.48273 * 216.38712 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 2.3523 3.6346 -0.7488 6 1 1.3777 4.1131 -0.8452 7 6 3.4031 4.3989 -1.5123 8 8 3.9862 3.8709 -2.4353 9 7 3.6947 5.6693 -1.1693 10 6 4.7166 6.4121 -1.9110 11 1 5.5112 5.7313 -2.2158 12 6 5.2992 7.5088 -1.0174 13 6 6.0275 6.8783 0.1416 14 1 6.0701 5.8029 0.2319 15 6 6.6385 7.6742 1.0871 16 7 6.5863 8.9837 0.9773 17 14 7.5407 6.8926 2.5240 18 1 8.9615 6.6697 2.1543 19 1 7.4712 7.7945 3.7017 20 1 6.9063 5.5922 2.8584 21 6 4.0948 7.0375 -3.1332 22 6 4.7860 7.0509 -4.3303 23 6 4.2155 7.6240 -5.4514 24 6 2.9536 8.1833 -5.3756 25 6 2.2647 8.1747 -4.1772 26 6 2.8333 7.5974 -3.0572 27 6 2.7495 3.4824 0.7378 28 6 2.2706 2.0964 1.1098 29 8 2.1336 1.6900 2.2442 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4935 2.0262 -1.9385 36 1 3.2503 1.8641 -1.6426 37 1 3.2285 6.0915 -0.4308 38 1 5.9946 8.1174 -1.5956 39 1 4.4924 8.1375 -0.6408 40 1 7.0165 9.5437 1.6423 41 1 5.7718 6.6135 -4.3896 42 1 4.7557 7.6348 -6.3865 43 1 2.5078 8.6307 -6.2516 44 1 1.2806 8.6156 -4.1168 45 1 2.2930 7.5864 -2.1221 46 1 3.8309 3.5562 0.8532 47 1 2.2496 4.2368 1.3454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153464811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:01 Heat of formation + Delta-G solvation = -75.011296 kcal Electronic energy + Delta-G solvation = -28383.423544 eV Core-core repulsion = 24529.599038 eV Total energy + Delta-G solvation = -3853.824505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90371 -40.73483 -39.63357 -37.50383 -36.72509 -34.97599 -34.65250 -32.53376 -31.65877 -30.71830 -30.34627 -28.74659 -26.82649 -24.93076 -23.85011 -23.72616 -23.26987 -21.50821 -20.99597 -20.40714 -18.69938 -18.44070 -17.99743 -17.61777 -17.09478 -16.81295 -16.47875 -16.19918 -16.07704 -15.63352 -15.25312 -15.03535 -14.73107 -14.69211 -14.55532 -14.24311 -14.15849 -14.08277 -13.84492 -13.64264 -13.42158 -13.30967 -12.90554 -12.85592 -12.65955 -12.51095 -12.44701 -12.37820 -12.11010 -12.00378 -11.83503 -11.56111 -11.30306 -11.13863 -10.74095 -10.54842 -9.96516 -9.78351 -9.71113 -9.48180 -8.19290 -6.28365 0.55104 0.60322 1.39209 1.42205 1.44479 1.50624 1.66897 1.89720 2.33688 2.40122 3.00620 3.15423 3.20913 3.36378 3.80066 3.86513 4.01539 4.08122 4.11159 4.22245 4.25037 4.26352 4.36789 4.47560 4.50090 4.56007 4.58909 4.69714 4.76593 4.80983 4.83022 4.84130 4.94058 4.95559 5.16891 5.24475 5.27820 5.31269 5.46860 5.54564 5.64198 5.65375 5.68876 5.80509 5.93965 6.00540 6.18542 6.23709 6.70149 6.85069 7.04908 7.33446 7.41002 8.91351 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007659 B = 0.004604 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.148597 B = 6079.571903 C = 9119.775366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.614 5.614 4 C 0.122 3.878 5 C -0.107 4.107 6 H 0.151 0.849 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.692 5.692 10 C 0.201 3.799 11 H 0.060 0.940 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.015 3.985 16 N -0.925 5.925 17 Si 0.947 3.053 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.145 4.145 28 C 0.515 3.485 29 O -0.576 6.576 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.410 0.590 38 H 0.002 0.998 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 -9.773 -9.529 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.008 4.008 3 N -0.347 5.347 4 C 0.000 4.000 5 C -0.129 4.129 6 H 0.169 0.831 7 C 0.311 3.689 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.096 3.904 11 H 0.078 0.922 12 C 0.000 4.000 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.565 5.565 17 Si 0.773 3.227 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.185 4.185 28 C 0.304 3.696 29 O -0.456 6.456 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.020 0.980 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.130 0.870 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.143 0.857 46 H 0.115 0.885 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.092 -10.290 -9.514 19.875 hybrid contribution 1.000 0.191 1.390 1.723 sum -13.092 -10.099 -8.125 18.423 Atomic orbital electron populations 1.22098 0.94412 1.03427 1.02005 1.21571 0.95427 0.80009 1.03759 1.48497 1.64707 1.14592 1.06866 1.22001 1.03681 0.87679 0.86683 1.22196 1.00476 0.96495 0.93693 0.83109 1.20472 0.83267 0.81650 0.83519 1.90667 1.53898 1.69196 1.31933 1.45845 1.39818 1.13160 1.35277 1.19714 0.88687 0.92954 0.89083 0.92188 1.19137 0.95158 0.92640 0.93099 1.21404 1.33611 0.92954 1.08345 0.92603 1.25678 0.97077 0.95123 1.00496 1.70059 1.45254 1.04473 1.36728 0.85714 0.79043 0.78631 0.79267 1.20607 1.20880 1.19118 1.20413 0.95668 0.98671 0.94958 1.21171 1.00067 1.00718 0.93202 1.21368 0.96369 0.98225 0.98324 1.21457 0.94818 0.99836 0.98694 1.21438 1.00931 0.99213 0.92625 1.21087 0.94811 0.98388 0.99466 1.22353 1.04102 0.95985 0.96047 1.21063 0.75914 0.88399 0.84233 1.90688 1.55615 1.76507 1.22789 0.91211 0.89563 0.94218 0.87824 0.91385 0.86982 0.90601 0.75384 0.97977 0.96763 0.92817 0.87040 0.84140 0.83378 0.83635 0.85736 0.88535 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.24 71.98 0.74 -1.51 16 2 C 0.11 1.94 6.65 86.38 0.57 2.51 16 3 N -0.61 -13.30 2.93 -818.00 -2.40 -15.70 16 4 C 0.12 2.39 6.66 86.83 0.58 2.97 16 5 C -0.11 -2.23 3.55 -10.48 -0.04 -2.27 16 6 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 7 C 0.52 15.61 7.03 87.66 0.62 16.23 16 8 O -0.58 -21.21 15.23 -3.02 -0.05 -21.26 16 9 N -0.69 -22.22 3.98 -446.10 -1.78 -23.99 16 10 C 0.20 7.85 2.12 44.25 0.09 7.94 16 11 H 0.06 2.65 7.44 -2.39 -0.02 2.63 16 12 C 0.04 1.76 4.49 29.85 0.13 1.90 16 13 C -0.53 -27.33 8.84 25.60 0.23 -27.10 16 14 H 0.06 2.88 7.74 -2.91 -0.02 2.85 16 15 C 0.02 0.82 5.46 84.65 0.46 1.28 16 16 N -0.93 -53.02 13.29 21.44 0.28 -52.74 16 17 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.10 -3.36 4.91 -19.86 -0.10 -3.46 16 22 C -0.13 -4.42 9.67 22.27 0.22 -4.20 16 23 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 24 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 25 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 26 C -0.12 -3.57 9.32 22.27 0.21 -3.36 16 27 C -0.14 -3.48 6.37 30.59 0.19 -3.29 16 28 C 0.52 14.30 8.02 87.90 0.71 15.01 16 29 O -0.58 -20.59 17.59 -3.02 -0.05 -20.64 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.79 7.06 -2.39 -0.02 1.78 16 37 H 0.41 11.84 8.60 -92.71 -0.80 11.04 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.11 3.73 8.04 -2.91 -0.02 3.70 16 42 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.12 3.40 7.72 -2.91 -0.02 3.38 16 46 H 0.10 2.73 7.89 -2.39 -0.02 2.71 16 47 H 0.13 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -72.14 395.52 3.49 -68.65 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.17 Total: 26.76 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.28 Total: -6.16 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.89 Total: -92.43 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.10 Total: -41.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.14 3.49 -68.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153464811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.360 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds