Wall clock time and date at job start Tue Mar 31 2020 17:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47299 * 2 1 4 4 C 1.46504 * 119.99978 * 280.79440 * 3 2 1 5 5 C 1.52995 * 109.47016 * 269.72529 * 4 3 2 6 6 C 1.34771 * 120.00435 * 100.51588 * 3 2 1 7 7 O 1.21584 * 120.00888 * 177.10061 * 6 3 2 8 8 C 1.47608 * 119.99752 * 357.10407 * 6 3 2 9 9 C 1.39739 * 120.08266 * 322.13597 * 8 6 3 10 10 C 1.37708 * 119.90606 * 179.79011 * 9 8 6 11 11 C 1.38997 * 120.08970 * 0.48804 * 10 9 8 12 12 O 1.35711 * 119.91157 * 179.76535 * 11 10 9 13 13 C 1.42894 * 116.99978 * 359.97438 * 12 11 10 14 14 C 1.53000 * 109.47068 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47201 * 304.99813 * 14 13 12 16 16 C 1.47196 * 109.47212 * 64.99953 * 14 13 12 17 17 N 9.44628 * 86.40343 * 93.86571 * 2 1 3 18 18 C 1.53002 * 109.47342 * 184.99625 * 14 13 12 19 19 C 1.50692 * 109.47402 * 174.99595 * 18 14 13 20 20 H 1.08001 * 120.00041 * 0.02562 * 19 18 14 21 21 C 1.37877 * 120.00129 * 180.02562 * 19 18 14 22 22 N 1.31509 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47077 * 90.00198 * 23 21 19 25 25 H 1.48506 * 109.47058 * 210.00092 * 23 21 19 26 26 H 1.48503 * 109.47131 * 329.99760 * 23 21 19 27 27 C 1.38996 * 120.17331 * 359.74125 * 11 10 9 28 28 C 1.37696 * 120.09392 * 0.02562 * 27 11 10 29 29 H 1.08999 * 109.47343 * 200.56132 * 1 2 3 30 30 H 1.08997 * 109.47114 * 320.56373 * 1 2 3 31 31 H 1.09006 * 109.47228 * 80.56278 * 1 2 3 32 32 H 1.09002 * 109.46871 * 239.99953 * 2 1 3 33 33 H 1.08999 * 109.47335 * 119.99900 * 2 1 3 34 34 H 1.09005 * 109.46868 * 29.72330 * 4 3 2 35 35 H 1.09001 * 109.47297 * 149.71974 * 4 3 2 36 36 H 1.09001 * 109.47541 * 59.99594 * 5 4 3 37 37 H 1.08998 * 109.47256 * 180.02562 * 5 4 3 38 38 H 1.09005 * 109.47139 * 299.99635 * 5 4 3 39 39 H 1.07994 * 120.04706 * 0.02562 * 9 8 6 40 40 H 1.07997 * 119.95550 * 180.22894 * 10 9 8 41 41 H 1.09001 * 109.47134 * 299.99588 * 13 12 11 42 42 H 1.08996 * 109.47303 * 59.99753 * 13 12 11 43 43 H 1.08999 * 109.47439 * 295.00250 * 18 14 13 44 44 H 1.09004 * 109.46627 * 55.00103 * 18 14 13 45 45 H 0.97000 * 120.00001 * 179.97438 * 22 21 19 46 46 H 1.08005 * 119.95112 * 180.02562 * 27 11 10 47 47 H 1.08000 * 120.04971 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0385 2.1510 -1.2463 5 6 3.3840 1.9520 -1.9469 6 6 2.4438 1.9456 1.1475 7 8 2.8982 3.0732 1.1385 8 6 2.3582 1.1945 2.4154 9 6 1.2582 0.3709 2.6687 10 6 1.1841 -0.3315 3.8509 11 6 2.1967 -0.2141 4.7958 12 8 2.1177 -0.9042 5.9616 13 6 0.9670 -1.7302 6.1499 14 6 1.0537 -2.4229 7.5113 15 1 1.9955 -2.9669 7.5829 16 6 0.9876 -1.4135 8.5806 17 7 0.9374 -0.6356 9.4062 18 6 -0.1131 -3.4014 7.6609 19 6 0.0395 -4.1722 8.9468 20 1 0.8839 -3.9829 9.5929 21 6 -0.8990 -5.1192 9.2983 22 7 -1.9269 -5.3500 8.5113 23 14 -0.7102 -6.0742 10.8927 24 1 -1.3971 -5.3465 11.9898 25 1 -1.3154 -7.4214 10.7373 26 1 0.7319 -6.2140 11.2182 27 6 3.2902 0.6079 4.5495 28 6 3.3741 1.3098 3.3679 29 1 -0.3634 -0.9622 0.3609 30 1 -0.3633 0.7937 0.6528 31 1 -0.3634 0.1685 -1.0138 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.2351 1.8079 -1.8983 35 1 1.8982 3.2085 -1.0225 36 1 3.5243 0.8945 -2.1707 37 1 3.3992 2.5251 -2.8739 38 1 4.1874 2.2951 -1.2949 39 1 0.4690 0.2823 1.9368 40 1 0.3361 -0.9711 4.0459 41 1 0.0680 -1.1149 6.1123 42 1 0.9262 -2.4816 5.3614 43 1 -1.0518 -2.8476 7.6784 44 1 -0.1158 -4.0947 6.8198 45 1 -2.5870 -6.0165 8.7585 46 1 4.0752 0.6961 5.2861 47 1 4.2239 1.9486 3.1774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155398286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:42 Heat of formation + Delta-G solvation = -22.842221 kcal Electronic energy + Delta-G solvation = -27145.331203 eV Core-core repulsion = 23293.768919 eV Total energy + Delta-G solvation = -3851.562285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89128 -39.79027 -37.56523 -36.59168 -36.19093 -33.91683 -32.92155 -32.05716 -31.10323 -30.51027 -29.49656 -27.36981 -24.70580 -24.10254 -23.85986 -22.90841 -21.98638 -21.80388 -19.55523 -18.31712 -17.61943 -17.35418 -16.95234 -16.51884 -15.74700 -15.59377 -15.33764 -15.17238 -14.77132 -14.62295 -14.14242 -14.03687 -13.79425 -13.41332 -13.20849 -13.16416 -12.92903 -12.87095 -12.68509 -12.55504 -12.41068 -12.25931 -12.07455 -12.00795 -11.59723 -11.47871 -11.34751 -11.20877 -11.06856 -10.83380 -10.73054 -10.66800 -10.37297 -10.05826 -9.79109 -9.40253 -9.22262 -9.06109 -8.56091 -8.30992 -6.20619 -4.24436 0.86036 1.16623 2.56502 2.68950 3.09631 3.24180 3.31130 3.34915 3.52920 3.59308 3.61290 4.22058 4.32958 4.40420 4.58701 4.62963 4.70488 4.72461 4.75637 4.94915 4.96075 5.03783 5.07191 5.16003 5.18180 5.24706 5.28794 5.33718 5.37624 5.42817 5.45549 5.57240 5.62806 5.70136 5.81898 5.85381 5.94983 6.10114 6.13625 6.15573 6.26487 6.27459 6.53781 7.06292 7.23204 7.31393 7.34078 7.74250 7.93077 8.08398 8.33328 8.79504 9.41897 10.90234 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.002135 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.739658 B =13113.474648 C =14025.635329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 N -0.611 5.611 4 C 0.112 3.888 5 C -0.167 4.167 6 C 0.567 3.433 7 O -0.539 6.539 8 C -0.185 4.185 9 C -0.063 4.063 10 C -0.219 4.219 11 C 0.167 3.833 12 O -0.309 6.309 13 C 0.063 3.937 14 C 0.012 3.988 15 H 0.114 0.886 16 C 0.242 3.758 17 N -0.465 5.465 18 C 0.034 3.966 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.164 4.164 28 C -0.025 4.025 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.264 0.736 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 8.816 -22.913 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.030 4.030 3 N -0.344 5.344 4 C -0.010 4.010 5 C -0.226 4.226 6 C 0.357 3.643 7 O -0.417 6.417 8 C -0.189 4.189 9 C -0.081 4.081 10 C -0.238 4.238 11 C 0.120 3.880 12 O -0.222 6.222 13 C -0.013 4.013 14 C -0.010 4.010 15 H 0.132 0.868 16 C -0.076 4.076 17 N -0.141 5.141 18 C -0.004 4.004 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.182 4.182 28 C -0.044 4.044 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.155 0.845 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.945 10.464 -21.529 24.925 hybrid contribution -0.296 -1.081 0.481 1.220 sum 6.649 9.383 -21.048 23.985 Atomic orbital electron populations 1.22404 0.95739 1.03078 1.02745 1.21895 0.94501 0.82439 1.04185 1.47950 1.64276 1.14130 1.08025 1.21403 0.97768 0.97325 0.84553 1.22119 0.97987 1.01864 1.00595 1.18361 0.76833 0.85746 0.83369 1.90772 1.45367 1.18907 1.86635 1.19642 0.98903 1.04105 0.96222 1.21770 0.97060 0.92503 0.96736 1.21325 1.00916 1.05986 0.95530 1.19350 0.93503 0.90136 0.85037 1.86114 1.44788 1.57001 1.34269 1.23169 0.86620 0.93176 0.98325 1.19307 1.05976 0.91268 0.84420 0.86784 1.28884 0.91944 0.92792 0.93934 1.81005 1.10096 1.12227 1.10805 1.19177 0.90186 0.92088 0.98943 1.21066 1.09516 1.20684 1.05433 0.92265 1.24945 0.94990 0.96854 0.97103 1.69922 1.12083 1.33744 1.37110 0.86545 0.78562 0.79203 0.83513 1.20578 1.21017 1.19655 1.20413 0.98813 1.00088 0.98905 1.20921 0.97268 0.95211 0.90965 0.90636 0.91436 0.91904 0.90442 0.88698 0.90543 0.89916 0.92589 0.91637 0.92112 0.83676 0.84286 0.91113 0.89595 0.95242 0.93924 0.92639 0.84498 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 8.59 37.16 0.32 -0.60 16 2 C 0.09 0.57 5.57 -4.05 -0.02 0.55 16 3 N -0.61 -5.25 2.48 -174.89 -0.43 -5.68 16 4 C 0.11 0.81 6.09 -4.04 -0.02 0.79 16 5 C -0.17 -1.11 10.24 37.15 0.38 -0.73 16 6 C 0.57 6.67 7.34 -12.44 -0.09 6.58 16 7 O -0.54 -8.12 16.49 5.29 0.09 -8.03 16 8 C -0.19 -2.09 5.16 -104.95 -0.54 -2.63 16 9 C -0.06 -0.62 7.43 -39.21 -0.29 -0.91 16 10 C -0.22 -2.36 9.01 -39.49 -0.36 -2.72 16 11 C 0.17 2.10 6.70 -39.02 -0.26 1.84 16 12 O -0.31 -4.38 9.86 -18.84 -0.19 -4.57 16 13 C 0.06 0.86 4.09 37.16 0.15 1.01 16 14 C 0.01 0.21 2.45 -93.41 -0.23 -0.02 16 15 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 16 C 0.24 4.88 13.71 -20.78 -0.28 4.59 16 17 N -0.46 -10.28 18.53 42.13 0.78 -9.50 16 18 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 19 C -0.53 -13.45 8.60 -34.44 -0.30 -13.75 16 20 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 23 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.16 -1.93 9.97 -39.50 -0.39 -2.32 16 28 C -0.02 -0.28 9.61 -39.22 -0.38 -0.66 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 6.72 -51.93 -0.35 0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.64 5.19 -51.93 -0.27 0.37 16 34 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.08 0.72 7.47 -51.93 -0.39 0.33 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.15 1.12 3.24 -52.49 -0.17 0.95 16 40 H 0.14 1.30 6.28 -52.49 -0.33 0.97 16 41 H 0.07 0.93 7.65 -51.93 -0.40 0.54 16 42 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 47 H 0.13 1.41 8.03 -52.49 -0.42 0.99 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -31.86 393.46 -7.55 -39.40 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.90 Total: -2.72 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.54 Total: -6.78 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.08 Total: -38.86 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.10 Total: -12.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.86 -7.55 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155398286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds