Wall clock time and date at job start Tue Mar 31 2020 17:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47299 * 2 1 4 4 C 1.46504 * 119.99978 * 280.79440 * 3 2 1 5 5 C 1.52995 * 109.47016 * 269.72529 * 4 3 2 6 6 C 1.34771 * 120.00435 * 100.51588 * 3 2 1 7 7 O 1.21584 * 120.00888 * 177.10061 * 6 3 2 8 8 C 1.47608 * 119.99752 * 357.10407 * 6 3 2 9 9 C 1.39739 * 120.08266 * 322.13597 * 8 6 3 10 10 C 1.37708 * 119.90606 * 179.79011 * 9 8 6 11 11 C 1.38997 * 120.08970 * 0.48804 * 10 9 8 12 12 O 1.35711 * 119.91157 * 179.76535 * 11 10 9 13 13 C 1.42894 * 116.99978 * 359.97438 * 12 11 10 14 14 C 1.53000 * 109.47068 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47201 * 304.99813 * 14 13 12 16 16 C 1.47196 * 109.47212 * 64.99953 * 14 13 12 17 17 N 9.44628 * 86.40343 * 93.86571 * 2 1 3 18 18 C 1.53002 * 109.47342 * 184.99625 * 14 13 12 19 19 C 1.50692 * 109.47402 * 174.99595 * 18 14 13 20 20 H 1.08001 * 120.00041 * 0.02562 * 19 18 14 21 21 C 1.37877 * 120.00129 * 180.02562 * 19 18 14 22 22 N 1.31509 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47077 * 90.00198 * 23 21 19 25 25 H 1.48506 * 109.47058 * 210.00092 * 23 21 19 26 26 H 1.48503 * 109.47131 * 329.99760 * 23 21 19 27 27 C 1.38996 * 120.17331 * 359.74125 * 11 10 9 28 28 C 1.37696 * 120.09392 * 0.02562 * 27 11 10 29 29 H 1.08999 * 109.47343 * 200.56132 * 1 2 3 30 30 H 1.08997 * 109.47114 * 320.56373 * 1 2 3 31 31 H 1.09006 * 109.47228 * 80.56278 * 1 2 3 32 32 H 1.09002 * 109.46871 * 239.99953 * 2 1 3 33 33 H 1.08999 * 109.47335 * 119.99900 * 2 1 3 34 34 H 1.09005 * 109.46868 * 29.72330 * 4 3 2 35 35 H 1.09001 * 109.47297 * 149.71974 * 4 3 2 36 36 H 1.09001 * 109.47541 * 59.99594 * 5 4 3 37 37 H 1.08998 * 109.47256 * 180.02562 * 5 4 3 38 38 H 1.09005 * 109.47139 * 299.99635 * 5 4 3 39 39 H 1.07994 * 120.04706 * 0.02562 * 9 8 6 40 40 H 1.07997 * 119.95550 * 180.22894 * 10 9 8 41 41 H 1.09001 * 109.47134 * 299.99588 * 13 12 11 42 42 H 1.08996 * 109.47303 * 59.99753 * 13 12 11 43 43 H 1.08999 * 109.47439 * 295.00250 * 18 14 13 44 44 H 1.09004 * 109.46627 * 55.00103 * 18 14 13 45 45 H 0.97000 * 120.00001 * 179.97438 * 22 21 19 46 46 H 1.08005 * 119.95112 * 180.02562 * 27 11 10 47 47 H 1.08000 * 120.04971 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0385 2.1510 -1.2463 5 6 3.3840 1.9520 -1.9469 6 6 2.4438 1.9456 1.1475 7 8 2.8982 3.0732 1.1385 8 6 2.3582 1.1945 2.4154 9 6 1.2582 0.3709 2.6687 10 6 1.1841 -0.3315 3.8509 11 6 2.1967 -0.2141 4.7958 12 8 2.1177 -0.9042 5.9616 13 6 0.9670 -1.7302 6.1499 14 6 1.0537 -2.4229 7.5113 15 1 1.9955 -2.9669 7.5829 16 6 0.9876 -1.4135 8.5806 17 7 0.9374 -0.6356 9.4062 18 6 -0.1131 -3.4014 7.6609 19 6 0.0395 -4.1722 8.9468 20 1 0.8839 -3.9829 9.5929 21 6 -0.8990 -5.1192 9.2983 22 7 -1.9269 -5.3500 8.5113 23 14 -0.7102 -6.0742 10.8927 24 1 -1.3971 -5.3465 11.9898 25 1 -1.3154 -7.4214 10.7373 26 1 0.7319 -6.2140 11.2182 27 6 3.2902 0.6079 4.5495 28 6 3.3741 1.3098 3.3679 29 1 -0.3634 -0.9622 0.3609 30 1 -0.3633 0.7937 0.6528 31 1 -0.3634 0.1685 -1.0138 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.2351 1.8079 -1.8983 35 1 1.8982 3.2085 -1.0225 36 1 3.5243 0.8945 -2.1707 37 1 3.3992 2.5251 -2.8739 38 1 4.1874 2.2951 -1.2949 39 1 0.4690 0.2823 1.9368 40 1 0.3361 -0.9711 4.0459 41 1 0.0680 -1.1149 6.1123 42 1 0.9262 -2.4816 5.3614 43 1 -1.0518 -2.8476 7.6784 44 1 -0.1158 -4.0947 6.8198 45 1 -2.5870 -6.0165 8.7585 46 1 4.0752 0.6961 5.2861 47 1 4.2239 1.9486 3.1774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155398286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:41 Heat of formation + Delta-G solvation = -39.489677 kcal Electronic energy + Delta-G solvation = -27146.053091 eV Core-core repulsion = 23293.768919 eV Total energy + Delta-G solvation = -3852.284172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73988 -40.73602 -38.67057 -37.60133 -37.35535 -35.64680 -33.92882 -33.38062 -31.93249 -31.31060 -30.24084 -28.91229 -25.95096 -24.92844 -24.46820 -23.99780 -23.40007 -22.74424 -20.30339 -19.30073 -18.74823 -18.43137 -18.34577 -17.67521 -16.78669 -16.61663 -16.44175 -16.14909 -16.05957 -15.43651 -15.24059 -14.96226 -14.71122 -14.58501 -14.39005 -14.16408 -13.92442 -13.80962 -13.78853 -13.61049 -13.42290 -13.32641 -13.13355 -12.99349 -12.88695 -12.62127 -12.50448 -12.43817 -12.27432 -11.98487 -11.92265 -11.75350 -11.64589 -11.53508 -11.24326 -10.95288 -10.55308 -10.05732 -9.77618 -9.22128 -8.20482 -6.27635 -0.03277 0.32036 1.40886 1.44167 1.52174 1.69545 1.85305 1.96704 1.99299 2.15907 2.43536 2.74012 3.12163 3.18374 3.48709 3.71215 3.85329 3.99835 4.05556 4.16652 4.19569 4.20306 4.24136 4.38313 4.43955 4.49363 4.52051 4.53328 4.59463 4.71674 4.76775 4.78947 4.92367 4.97041 5.01280 5.05327 5.13563 5.24825 5.29274 5.31925 5.40934 5.44951 5.57951 5.60112 5.66906 5.77674 6.16307 6.32250 6.37197 6.72539 6.85852 7.09672 7.40849 8.90197 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.002135 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.739658 B =13113.474648 C =14025.635329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 N -0.603 5.603 4 C 0.107 3.893 5 C -0.162 4.162 6 C 0.561 3.439 7 O -0.583 6.583 8 C -0.192 4.192 9 C -0.053 4.053 10 C -0.216 4.216 11 C 0.149 3.851 12 O -0.324 6.324 13 C 0.070 3.930 14 C 0.020 3.980 15 H 0.130 0.870 16 C 0.252 3.748 17 N -0.504 5.504 18 C 0.041 3.959 19 C -0.540 4.540 20 H 0.054 0.946 21 C 0.015 3.985 22 N -0.919 5.919 23 Si 0.945 3.055 24 H -0.286 1.286 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.170 4.170 28 C -0.032 4.032 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.010 0.990 44 H 0.049 0.951 45 H 0.265 0.735 46 H 0.141 0.859 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 7.705 -24.726 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.035 4.035 3 N -0.334 5.334 4 C -0.015 4.015 5 C -0.220 4.220 6 C 0.351 3.649 7 O -0.465 6.465 8 C -0.195 4.195 9 C -0.070 4.070 10 C -0.235 4.235 11 C 0.103 3.897 12 O -0.237 6.237 13 C -0.006 4.006 14 C -0.001 4.001 15 H 0.148 0.852 16 C -0.064 4.064 17 N -0.182 5.182 18 C 0.002 3.998 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.184 4.184 22 N -0.559 5.559 23 Si 0.771 3.229 24 H -0.212 1.212 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.188 4.188 28 C -0.051 4.051 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.186 0.814 40 H 0.175 0.825 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.159 0.841 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.609 9.326 -23.369 26.015 hybrid contribution -0.176 -0.713 0.957 1.206 sum 6.433 8.613 -22.412 24.857 Atomic orbital electron populations 1.22384 0.94524 1.03426 1.03410 1.22117 0.95429 0.80884 1.05030 1.48072 1.62761 1.15065 1.07515 1.21566 0.99174 0.96366 0.84367 1.22072 0.96596 1.02748 1.00587 1.18522 0.76729 0.85290 0.84368 1.90746 1.47656 1.20756 1.87323 1.19782 0.99353 1.04286 0.96123 1.21990 0.96872 0.91351 0.96828 1.21535 1.00817 1.05999 0.95136 1.19510 0.94441 0.90728 0.85053 1.86051 1.44810 1.57543 1.35310 1.23051 0.86832 0.94002 0.96697 1.19249 1.04891 0.90303 0.85661 0.85226 1.29490 0.90819 0.92477 0.93663 1.81003 1.11325 1.13719 1.12108 1.18982 0.90869 0.92426 0.97473 1.21491 1.08944 1.20641 1.06765 0.92798 1.25631 0.95084 0.98051 0.99679 1.69995 1.12793 1.34570 1.38500 0.85744 0.78653 0.78233 0.80247 1.21220 1.20344 1.19008 1.20500 0.99058 1.00157 0.99116 1.20998 0.97700 0.95350 0.91067 0.89228 0.92545 0.90665 0.88321 0.89208 0.87488 0.91835 0.91432 0.90020 0.94804 0.81439 0.82466 0.90564 0.86564 0.97159 0.93269 0.92620 0.84110 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.59 71.98 0.62 -0.61 16 2 C 0.09 0.83 5.57 86.38 0.48 1.31 16 3 N -0.60 -9.49 2.48 -825.50 -2.04 -11.54 16 4 C 0.11 1.39 6.09 86.38 0.53 1.92 16 5 C -0.16 -1.94 10.24 71.98 0.74 -1.20 16 6 C 0.56 13.06 7.34 86.72 0.64 13.70 16 7 O -0.58 -18.13 16.49 -3.98 -0.07 -18.19 16 8 C -0.19 -4.19 5.16 -20.08 -0.10 -4.29 16 9 C -0.05 -0.93 7.43 22.51 0.17 -0.77 16 10 C -0.22 -4.18 9.01 22.33 0.20 -3.98 16 11 C 0.15 3.55 6.70 22.63 0.15 3.70 16 12 O -0.32 -8.65 9.86 -90.32 -0.89 -9.54 16 13 C 0.07 1.75 4.09 71.98 0.29 2.04 16 14 C 0.02 0.67 2.45 -12.60 -0.03 0.64 16 15 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 16 C 0.25 10.01 13.71 89.45 1.23 11.23 16 17 N -0.50 -22.27 18.53 20.00 0.37 -21.90 16 18 C 0.04 1.71 4.42 29.85 0.13 1.84 16 19 C -0.54 -27.10 8.60 25.60 0.22 -26.88 16 20 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 21 C 0.02 0.79 5.46 84.66 0.46 1.25 16 22 N -0.92 -50.06 13.29 21.45 0.28 -49.77 16 23 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 C -0.17 -3.93 9.97 22.32 0.22 -3.70 16 28 C -0.03 -0.73 9.61 22.50 0.22 -0.52 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.54 6.72 -2.39 -0.02 0.52 16 31 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.98 5.19 -2.39 -0.01 0.97 16 34 H 0.11 0.75 8.06 -2.38 -0.02 0.73 16 35 H 0.06 1.10 7.47 -2.39 -0.02 1.08 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.17 2.15 3.24 -2.91 -0.01 2.14 16 40 H 0.16 2.42 6.28 -2.91 -0.02 2.40 16 41 H 0.08 1.84 7.65 -2.39 -0.02 1.82 16 42 H 0.12 2.23 7.65 -2.39 -0.02 2.21 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.14 2.95 8.03 -2.91 -0.02 2.93 16 Total: -1.00 -69.24 393.46 6.82 -62.43 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.98 Total: 8.85 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 6.16 Total: -4.31 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.39 Total: -83.21 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.96 Total: -27.73 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.24 6.82 -62.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155398286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.938 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds