Wall clock time and date at job start Tue Mar 31 2020 17:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47265 * 2 1 4 4 C 1.46504 * 120.00496 * 270.00630 * 3 2 1 5 5 C 1.52998 * 109.46656 * 277.52306 * 4 3 2 6 6 C 1.34775 * 119.99611 * 89.99907 * 3 2 1 7 7 O 1.21554 * 119.99927 * 5.76444 * 6 3 2 8 8 C 1.47859 * 120.00220 * 185.75905 * 6 3 2 9 9 C 1.39604 * 120.11549 * 314.29488 * 8 6 3 10 10 C 1.37967 * 119.96240 * 180.02562 * 9 8 6 11 11 C 1.38286 * 120.20998 * 359.73008 * 10 9 8 12 12 C 1.38813 * 120.23441 * 0.54843 * 11 10 9 13 13 O 1.35915 * 119.98014 * 179.72583 * 12 11 10 14 14 C 1.42889 * 117.00303 * 359.72128 * 13 12 11 15 15 C 1.53006 * 109.47250 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46818 * 305.00452 * 15 14 13 17 17 C 1.47206 * 109.46825 * 65.00249 * 15 14 13 18 18 N 9.05806 * 113.91275 * 229.45907 * 3 1 2 19 19 C 1.52999 * 109.47141 * 185.00005 * 15 14 13 20 20 C 1.50703 * 109.46771 * 174.99911 * 19 15 14 21 21 H 1.08000 * 119.99959 * 0.02562 * 20 19 15 22 22 C 1.37880 * 119.99399 * 179.72605 * 20 19 15 23 23 N 1.31514 * 120.00570 * 0.27734 * 22 20 19 24 24 Si 1.86805 * 119.99675 * 180.27676 * 22 20 19 25 25 H 1.48508 * 109.46808 * 60.00044 * 24 22 20 26 26 H 1.48499 * 109.47177 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47255 * 300.00474 * 24 22 20 28 28 C 1.38492 * 120.03042 * 359.44788 * 12 11 10 29 29 H 1.08997 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47365 * 299.99803 * 1 2 3 31 31 H 1.09003 * 109.47526 * 59.99739 * 1 2 3 32 32 H 1.09000 * 109.46942 * 240.00527 * 2 1 3 33 33 H 1.08993 * 109.47366 * 120.00786 * 2 1 3 34 34 H 1.09004 * 109.46759 * 37.51754 * 4 3 2 35 35 H 1.08993 * 109.47342 * 157.52433 * 4 3 2 36 36 H 1.09001 * 109.47069 * 189.41800 * 5 4 3 37 37 H 1.09001 * 109.47210 * 309.40974 * 5 4 3 38 38 H 1.09000 * 109.47660 * 69.41454 * 5 4 3 39 39 H 1.07992 * 120.02134 * 0.02562 * 9 8 6 40 40 H 1.08003 * 119.89265 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.88538 * 180.27137 * 11 10 9 42 42 H 1.09000 * 109.47414 * 60.00505 * 14 13 12 43 43 H 1.09002 * 109.47408 * 300.00459 * 14 13 12 44 44 H 1.09001 * 109.46932 * 55.00709 * 19 15 14 45 45 H 1.08993 * 109.47496 * 295.00116 * 19 15 14 46 46 H 0.96993 * 120.00030 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.10068 * 180.25158 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6412 1.6814 -1.8048 6 6 2.2429 2.0165 1.1672 7 8 2.1415 1.4125 2.2172 8 6 2.6128 3.4480 1.1706 9 6 3.5834 3.9228 0.2866 10 6 3.9265 5.2591 0.2928 11 6 3.3079 6.1323 1.1687 12 6 2.3458 5.6683 2.0553 13 8 1.7450 6.5300 2.9177 14 6 2.1567 7.8971 2.8609 15 6 1.3766 8.7081 3.8977 16 1 0.3074 8.5691 3.7381 17 6 1.7347 8.2495 5.2499 18 7 2.0088 7.8965 6.2927 19 6 1.7255 10.1908 3.7530 20 6 0.8677 11.0023 4.6893 21 1 0.1462 10.5098 5.3244 22 6 1.0084 12.3730 4.7396 23 7 1.8873 12.9727 3.9667 24 14 -0.0495 13.3782 5.9058 25 1 0.2004 12.9403 7.3027 26 1 0.2933 14.8167 5.7697 27 1 -1.4825 13.1766 5.5727 28 6 1.9937 4.3288 2.0574 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 1.4975 1.7864 -1.9909 35 1 2.2268 3.1495 -1.1085 36 1 3.8937 2.3160 -2.6544 37 1 4.3864 1.8116 -1.0201 38 1 3.6258 0.6387 -2.1220 39 1 4.0654 3.2445 -0.4017 40 1 4.6773 5.6253 -0.3918 41 1 3.5773 7.1781 1.1661 42 1 1.9600 8.2947 1.8653 43 1 3.2233 7.9646 3.0750 44 1 1.5435 10.5083 2.7263 45 1 2.7763 10.3425 3.9994 46 1 1.9864 13.9369 4.0024 47 1 1.2424 3.9674 2.7439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155412359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:49 Heat of formation + Delta-G solvation = -24.099914 kcal Electronic energy + Delta-G solvation = -27130.163497 eV Core-core repulsion = 23278.546675 eV Total energy + Delta-G solvation = -3851.616822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88934 -39.73981 -37.57924 -36.59925 -36.15628 -33.87859 -32.83527 -32.08827 -31.36000 -30.04473 -29.68512 -27.26975 -25.03660 -24.05206 -23.85259 -22.64786 -22.17153 -21.81474 -19.65810 -18.21288 -17.27278 -17.13677 -16.77521 -16.60544 -16.20312 -15.85852 -15.32184 -15.08394 -14.64824 -14.50918 -14.31806 -14.02181 -13.75522 -13.69629 -13.18147 -13.17461 -12.95687 -12.92497 -12.60700 -12.54656 -12.32037 -12.19783 -12.05982 -11.71994 -11.63712 -11.43537 -11.35568 -11.24440 -11.15589 -10.83161 -10.73239 -10.66549 -10.34243 -10.11144 -9.75441 -9.38577 -9.21160 -9.05254 -8.52991 -8.30085 -6.17743 -4.21545 0.77425 1.25474 2.42169 2.63244 3.19393 3.27796 3.31984 3.36718 3.57133 3.59179 3.64914 4.14117 4.35548 4.45682 4.61725 4.64616 4.66158 4.71082 4.79587 4.93497 4.96733 5.01786 5.08035 5.13219 5.19935 5.20745 5.29440 5.31343 5.36888 5.39162 5.42543 5.58092 5.64750 5.69356 5.76437 5.84673 6.05401 6.11324 6.16244 6.20732 6.21201 6.30430 6.51484 7.00158 7.26546 7.36127 7.38965 7.76984 7.86162 8.11513 8.38202 8.82169 9.44553 10.93091 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.002101 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.023674 B =13323.388212 C =13831.560270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.609 5.609 4 C 0.091 3.909 5 C -0.177 4.177 6 C 0.564 3.436 7 O -0.529 6.529 8 C -0.094 4.094 9 C -0.150 4.150 10 C -0.083 4.083 11 C -0.188 4.188 12 C 0.138 3.862 13 O -0.311 6.311 14 C 0.064 3.936 15 C 0.012 3.988 16 H 0.114 0.886 17 C 0.242 3.758 18 N -0.465 5.465 19 C 0.035 3.965 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.064 3.936 23 N -0.891 5.891 24 Si 0.894 3.106 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.104 4.104 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.029 0.971 46 H 0.264 0.736 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -22.028 -18.605 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.342 5.342 4 C -0.031 4.031 5 C -0.235 4.235 6 C 0.353 3.647 7 O -0.405 6.405 8 C -0.098 4.098 9 C -0.168 4.168 10 C -0.102 4.102 11 C -0.207 4.207 12 C 0.092 3.908 13 O -0.225 6.225 14 C -0.012 4.012 15 C -0.010 4.010 16 H 0.132 0.868 17 C -0.075 4.075 18 N -0.141 5.141 19 C -0.004 4.004 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.124 4.124 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.692 -22.750 -16.361 28.152 hybrid contribution -0.479 1.030 0.054 1.137 sum 2.213 -21.721 -16.307 27.251 Atomic orbital electron populations 1.22139 0.95707 1.02316 1.02523 1.21427 0.94477 0.82002 1.03285 1.47919 1.66039 1.14330 1.05932 1.21885 0.97268 0.99009 0.84969 1.22358 0.97129 1.02414 1.01634 1.18409 0.76371 0.86546 0.83414 1.90802 1.51160 1.67372 1.31191 1.19500 0.99448 0.92631 0.98173 1.21625 0.98953 0.96538 0.99726 1.20887 0.98635 0.92713 0.97919 1.21579 0.99167 1.01532 0.98426 1.18856 0.92181 0.89948 0.89820 1.86156 1.61343 1.19614 1.55364 1.23131 0.99655 0.77803 1.00563 1.19303 1.01677 0.98203 0.81780 0.86828 1.28844 0.92672 0.91241 0.94787 1.80963 1.09620 1.11310 1.12226 1.19170 0.98330 0.83725 0.99134 1.21039 1.21143 0.91773 1.22768 0.92321 1.24943 0.95342 0.97909 0.95671 1.69914 1.34332 1.10070 1.38591 0.86606 0.80814 0.78941 0.81462 1.20166 1.21130 1.19944 1.20343 1.02211 0.90084 0.99750 0.91481 0.92115 0.92495 0.90488 0.89656 0.90386 0.88567 0.90888 0.91642 0.92101 0.84328 0.85111 0.84436 0.89742 0.91236 0.93947 0.95239 0.92599 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.11 0.81 6.19 -4.04 -0.03 0.78 16 3 N -0.61 -5.26 2.48 -174.80 -0.43 -5.70 16 4 C 0.09 0.53 5.60 -4.04 -0.02 0.50 16 5 C -0.18 -0.77 9.15 37.16 0.34 -0.43 16 6 C 0.56 6.91 7.27 -12.32 -0.09 6.82 16 7 O -0.53 -8.45 16.54 5.32 0.09 -8.36 16 8 C -0.09 -1.11 5.08 -104.99 -0.53 -1.64 16 9 C -0.15 -1.38 7.41 -39.17 -0.29 -1.67 16 10 C -0.08 -0.75 10.03 -39.66 -0.40 -1.15 16 11 C -0.19 -2.08 9.03 -39.35 -0.36 -2.44 16 12 C 0.14 1.86 6.68 -39.28 -0.26 1.60 16 13 O -0.31 -4.73 9.87 -19.47 -0.19 -4.93 16 14 C 0.06 0.93 4.09 37.16 0.15 1.08 16 15 C 0.01 0.22 2.45 -93.40 -0.23 -0.01 16 16 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 17 C 0.24 5.06 13.71 -20.80 -0.29 4.78 16 18 N -0.46 -10.63 18.53 42.10 0.78 -9.85 16 19 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 20 C -0.53 -13.70 8.60 -34.44 -0.30 -14.00 16 21 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 24 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C -0.10 -1.41 9.63 -39.02 -0.38 -1.78 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.09 0.76 7.35 -51.93 -0.38 0.38 16 34 H 0.08 0.34 8.13 -51.93 -0.42 -0.09 16 35 H 0.10 0.61 5.10 -51.93 -0.26 0.34 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.14 0.96 3.70 -52.49 -0.19 0.76 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.14 1.35 6.28 -52.49 -0.33 1.02 16 42 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 43 H 0.07 0.96 7.67 -51.93 -0.40 0.57 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -32.68 394.00 -7.51 -40.19 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.90 Total: -3.08 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.51 Total: -6.09 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 1.08 Total: -39.57 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.10 Total: -13.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.68 -7.51 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155412359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.089 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds