Wall clock time and date at job start Tue Mar 31 2020 17:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47265 * 2 1 4 4 C 1.46504 * 120.00496 * 270.00630 * 3 2 1 5 5 C 1.52998 * 109.46656 * 277.52306 * 4 3 2 6 6 C 1.34775 * 119.99611 * 89.99907 * 3 2 1 7 7 O 1.21554 * 119.99927 * 5.76444 * 6 3 2 8 8 C 1.47859 * 120.00220 * 185.75905 * 6 3 2 9 9 C 1.39604 * 120.11549 * 314.29488 * 8 6 3 10 10 C 1.37967 * 119.96240 * 180.02562 * 9 8 6 11 11 C 1.38286 * 120.20998 * 359.73008 * 10 9 8 12 12 C 1.38813 * 120.23441 * 0.54843 * 11 10 9 13 13 O 1.35915 * 119.98014 * 179.72583 * 12 11 10 14 14 C 1.42889 * 117.00303 * 359.72128 * 13 12 11 15 15 C 1.53006 * 109.47250 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46818 * 305.00452 * 15 14 13 17 17 C 1.47206 * 109.46825 * 65.00249 * 15 14 13 18 18 N 9.05806 * 113.91275 * 229.45907 * 3 1 2 19 19 C 1.52999 * 109.47141 * 185.00005 * 15 14 13 20 20 C 1.50703 * 109.46771 * 174.99911 * 19 15 14 21 21 H 1.08000 * 119.99959 * 0.02562 * 20 19 15 22 22 C 1.37880 * 119.99399 * 179.72605 * 20 19 15 23 23 N 1.31514 * 120.00570 * 0.27734 * 22 20 19 24 24 Si 1.86805 * 119.99675 * 180.27676 * 22 20 19 25 25 H 1.48508 * 109.46808 * 60.00044 * 24 22 20 26 26 H 1.48499 * 109.47177 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47255 * 300.00474 * 24 22 20 28 28 C 1.38492 * 120.03042 * 359.44788 * 12 11 10 29 29 H 1.08997 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47365 * 299.99803 * 1 2 3 31 31 H 1.09003 * 109.47526 * 59.99739 * 1 2 3 32 32 H 1.09000 * 109.46942 * 240.00527 * 2 1 3 33 33 H 1.08993 * 109.47366 * 120.00786 * 2 1 3 34 34 H 1.09004 * 109.46759 * 37.51754 * 4 3 2 35 35 H 1.08993 * 109.47342 * 157.52433 * 4 3 2 36 36 H 1.09001 * 109.47069 * 189.41800 * 5 4 3 37 37 H 1.09001 * 109.47210 * 309.40974 * 5 4 3 38 38 H 1.09000 * 109.47660 * 69.41454 * 5 4 3 39 39 H 1.07992 * 120.02134 * 0.02562 * 9 8 6 40 40 H 1.08003 * 119.89265 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.88538 * 180.27137 * 11 10 9 42 42 H 1.09000 * 109.47414 * 60.00505 * 14 13 12 43 43 H 1.09002 * 109.47408 * 300.00459 * 14 13 12 44 44 H 1.09001 * 109.46932 * 55.00709 * 19 15 14 45 45 H 1.08993 * 109.47496 * 295.00116 * 19 15 14 46 46 H 0.96993 * 120.00030 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.10068 * 180.25158 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6412 1.6814 -1.8048 6 6 2.2429 2.0165 1.1672 7 8 2.1415 1.4125 2.2172 8 6 2.6128 3.4480 1.1706 9 6 3.5834 3.9228 0.2866 10 6 3.9265 5.2591 0.2928 11 6 3.3079 6.1323 1.1687 12 6 2.3458 5.6683 2.0553 13 8 1.7450 6.5300 2.9177 14 6 2.1567 7.8971 2.8609 15 6 1.3766 8.7081 3.8977 16 1 0.3074 8.5691 3.7381 17 6 1.7347 8.2495 5.2499 18 7 2.0088 7.8965 6.2927 19 6 1.7255 10.1908 3.7530 20 6 0.8677 11.0023 4.6893 21 1 0.1462 10.5098 5.3244 22 6 1.0084 12.3730 4.7396 23 7 1.8873 12.9727 3.9667 24 14 -0.0495 13.3782 5.9058 25 1 0.2004 12.9403 7.3027 26 1 0.2933 14.8167 5.7697 27 1 -1.4825 13.1766 5.5727 28 6 1.9937 4.3288 2.0574 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 1.4975 1.7864 -1.9909 35 1 2.2268 3.1495 -1.1085 36 1 3.8937 2.3160 -2.6544 37 1 4.3864 1.8116 -1.0201 38 1 3.6258 0.6387 -2.1220 39 1 4.0654 3.2445 -0.4017 40 1 4.6773 5.6253 -0.3918 41 1 3.5773 7.1781 1.1661 42 1 1.9600 8.2947 1.8653 43 1 3.2233 7.9646 3.0750 44 1 1.5435 10.5083 2.7263 45 1 2.7763 10.3425 3.9994 46 1 1.9864 13.9369 4.0024 47 1 1.2424 3.9674 2.7439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155412359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:49 Heat of formation + Delta-G solvation = -42.100391 kcal Electronic energy + Delta-G solvation = -27130.944056 eV Core-core repulsion = 23278.546675 eV Total energy + Delta-G solvation = -3852.397381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75430 -40.72633 -38.70913 -37.65868 -37.35010 -35.67042 -33.89623 -33.36318 -32.20892 -30.92172 -30.37692 -28.87278 -26.10398 -25.12817 -24.47927 -23.77801 -23.34622 -22.93932 -20.49596 -19.06573 -18.76302 -18.43412 -17.93622 -17.42298 -17.29472 -16.83119 -16.56659 -16.32239 -16.07967 -15.32747 -15.15715 -14.86351 -14.84425 -14.68025 -14.38616 -14.34337 -14.05606 -13.88503 -13.83401 -13.50884 -13.44205 -13.21047 -13.05608 -12.96486 -12.85786 -12.62128 -12.48856 -12.37893 -12.19335 -12.07269 -11.92191 -11.90331 -11.72522 -11.56728 -11.27388 -11.01235 -10.55829 -10.07908 -9.76518 -9.22242 -8.21462 -6.29023 -0.10240 0.39483 1.41257 1.43125 1.49574 1.52908 1.82270 1.91272 1.94632 2.24047 2.43204 2.71496 3.10046 3.16740 3.38773 3.77984 3.94104 3.98786 4.09361 4.14082 4.16772 4.18770 4.23112 4.30874 4.43261 4.49029 4.49445 4.51432 4.61674 4.66669 4.75019 4.76408 4.88717 4.92714 4.99968 5.03983 5.18984 5.24995 5.31130 5.36236 5.42608 5.45777 5.55566 5.56668 5.68728 5.76057 6.15037 6.25661 6.39167 6.69657 6.83675 7.00656 7.39320 8.89081 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.002101 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.023674 B =13323.388212 C =13831.560270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.084 3.916 5 C -0.174 4.174 6 C 0.556 3.444 7 O -0.582 6.582 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.073 4.073 11 C -0.187 4.187 12 C 0.116 3.884 13 O -0.333 6.333 14 C 0.072 3.928 15 C 0.020 3.980 16 H 0.128 0.872 17 C 0.252 3.748 18 N -0.505 5.505 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.052 0.948 22 C 0.016 3.984 23 N -0.919 5.919 24 Si 0.946 3.054 25 H -0.284 1.284 26 H -0.280 1.280 27 H -0.264 1.264 28 C -0.129 4.129 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.154 0.846 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.011 0.989 46 H 0.265 0.735 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 -22.416 -21.942 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.331 5.331 4 C -0.037 4.037 5 C -0.231 4.231 6 C 0.345 3.655 7 O -0.463 6.463 8 C -0.107 4.107 9 C -0.152 4.152 10 C -0.091 4.091 11 C -0.206 4.206 12 C 0.071 3.929 13 O -0.247 6.247 14 C -0.003 4.003 15 C -0.002 4.002 16 H 0.145 0.855 17 C -0.064 4.064 18 N -0.182 5.182 19 C 0.004 3.996 20 C -0.581 4.581 21 H 0.071 0.929 22 C -0.184 4.184 23 N -0.558 5.558 24 Si 0.772 3.228 25 H -0.210 1.210 26 H -0.206 1.206 27 H -0.188 1.188 28 C -0.149 4.149 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.184 0.816 40 H 0.188 0.812 41 H 0.171 0.829 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.398 -23.151 -19.754 30.622 hybrid contribution -0.693 1.054 0.994 1.606 sum 2.705 -22.097 -18.760 29.112 Atomic orbital electron populations 1.22101 0.95356 1.03169 1.01563 1.21592 0.94755 0.81382 1.03885 1.48070 1.64276 1.14735 1.05977 1.22166 0.99176 0.98608 0.83778 1.22336 0.95415 1.03486 1.01911 1.18638 0.76206 0.86833 0.83776 1.90766 1.53898 1.68415 1.33208 1.19579 1.00287 0.92177 0.98681 1.21968 0.97228 0.97297 0.98679 1.21343 0.98332 0.92055 0.97367 1.21845 0.98191 1.02745 0.97816 1.18978 0.93639 0.89492 0.90836 1.86081 1.62224 1.19849 1.56595 1.23001 0.99131 0.77635 1.00539 1.19265 1.03087 0.96524 0.81302 0.85464 1.29475 0.91564 0.90266 0.95142 1.80954 1.11081 1.12649 1.13536 1.18972 0.96423 0.85741 0.98473 1.21457 1.21230 0.92391 1.23013 0.92926 1.25637 0.96520 0.99127 0.97098 1.69989 1.35601 1.10290 1.39927 0.85784 0.79984 0.77836 0.79176 1.20965 1.20563 1.18846 1.20292 1.03001 0.90919 1.00664 0.89803 0.95214 0.91168 0.87012 0.91836 0.88217 0.88960 0.88685 0.92641 0.91315 0.81619 0.81159 0.82851 0.86717 0.90655 0.93272 0.97107 0.92555 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.24 71.98 0.74 -1.41 16 2 C 0.11 1.44 6.19 86.38 0.53 1.98 16 3 N -0.60 -9.78 2.48 -825.22 -2.04 -11.82 16 4 C 0.08 0.72 5.60 86.38 0.48 1.21 16 5 C -0.17 -0.84 9.15 71.98 0.66 -0.19 16 6 C 0.56 14.02 7.27 86.79 0.63 14.65 16 7 O -0.58 -20.00 16.54 -3.88 -0.06 -20.07 16 8 C -0.10 -2.44 5.08 -20.10 -0.10 -2.55 16 9 C -0.13 -2.12 7.41 22.54 0.17 -1.96 16 10 C -0.07 -1.06 10.03 22.22 0.22 -0.84 16 11 C -0.19 -3.70 9.03 22.42 0.20 -3.50 16 12 C 0.12 3.09 6.68 22.47 0.15 3.24 16 13 O -0.33 -10.13 9.87 -92.59 -0.91 -11.04 16 14 C 0.07 2.00 4.09 71.98 0.29 2.29 16 15 C 0.02 0.70 2.45 -12.60 -0.03 0.67 16 16 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 17 C 0.25 10.65 13.71 89.46 1.23 11.87 16 18 N -0.50 -23.56 18.53 19.99 0.37 -23.19 16 19 C 0.04 1.84 4.42 29.85 0.13 1.97 16 20 C -0.54 -28.04 8.60 25.60 0.22 -27.82 16 21 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 22 C 0.02 0.84 5.46 84.66 0.46 1.31 16 23 N -0.92 -50.92 13.29 21.45 0.28 -50.63 16 24 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 C -0.13 -3.65 9.63 22.63 0.22 -3.43 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 33 H 0.06 1.17 7.35 -2.39 -0.02 1.15 16 34 H 0.10 0.48 8.13 -2.38 -0.02 0.46 16 35 H 0.09 0.90 5.10 -2.39 -0.01 0.88 16 36 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.05 0.41 6.32 -2.39 -0.02 0.39 16 38 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.17 1.69 3.70 -2.91 -0.01 1.68 16 40 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 2.50 6.28 -2.91 -0.02 2.48 16 42 H 0.11 2.47 7.64 -2.39 -0.02 2.45 16 43 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 47 H 0.11 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -74.00 394.00 6.84 -67.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.98 Total: 7.27 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 6.21 Total: -2.48 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.39 Total: -85.64 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.98 Total: -31.11 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.00 6.84 -67.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155412359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.054 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds