Wall clock time and date at job start Tue Mar 31 2020 15:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 N 1.46495 * 109.47155 * 179.97438 * 17 16 14 19 19 C 1.39830 * 119.76986 * 90.00304 * 18 17 16 20 20 C 1.38862 * 120.19247 * 18.45365 * 19 18 17 21 21 C 1.38111 * 119.88898 * 179.97438 * 20 19 18 22 22 C 1.38303 * 120.09228 * 0.02690 * 21 20 19 23 23 C 1.38282 * 120.14748 * 359.97438 * 22 21 20 24 24 C 1.38091 * 120.02408 * 359.97438 * 23 22 21 25 25 C 1.50659 * 120.17765 * 179.97438 * 24 23 22 26 26 C 1.52905 * 109.52319 * 146.07511 * 25 24 23 27 27 C 1.34561 * 119.78197 * 269.72692 * 18 17 16 28 28 O 1.21291 * 119.60697 * 0.84077 * 27 18 17 29 29 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 31 31 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 34 34 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 35 35 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 36 36 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 37 37 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 38 38 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 39 39 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 40 40 H 1.07998 * 120.06135 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.95353 * 180.02562 * 21 20 19 42 42 H 1.08006 * 119.92452 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.98461 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46598 * 266.09447 * 25 24 23 45 45 H 1.09006 * 109.46205 * 26.06958 * 25 24 23 46 46 H 1.09001 * 109.39656 * 168.71386 * 26 25 24 47 47 H 1.09001 * 109.39862 * 288.53485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 7 4.6328 -0.4745 5.3434 19 6 5.8548 -1.1532 5.3043 20 6 6.7771 -0.8738 4.3045 21 6 7.9823 -1.5476 4.2722 22 6 8.2706 -2.4995 5.2331 23 6 7.3540 -2.7799 6.2299 24 6 6.1478 -2.1088 6.2680 25 6 5.1464 -2.4119 7.3521 26 6 4.3912 -1.1348 7.7218 27 6 3.9044 -0.4464 6.4744 28 8 2.8417 0.1382 6.4884 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9028 -0.5285 -4.4375 33 1 2.4157 -2.7377 0.9718 34 1 1.6237 -2.2852 2.5003 35 1 0.6904 -2.3002 0.9847 36 1 2.4470 -1.0879 3.9074 37 1 3.9003 -1.6024 3.0180 38 1 4.9935 0.5575 3.5533 39 1 3.5405 1.0726 4.4430 40 1 6.5529 -0.1303 3.5540 41 1 8.7006 -1.3308 3.4953 42 1 9.2141 -3.0245 5.2055 43 1 7.5817 -3.5241 6.9788 44 1 4.4399 -3.1611 6.9948 45 1 5.6667 -2.7933 8.2308 46 1 3.5392 -1.3879 8.3529 47 1 5.0575 -0.4645 8.2648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158884177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:56 Heat of formation + Delta-G solvation = -34.730461 kcal Electronic energy + Delta-G solvation = -28531.589366 eV Core-core repulsion = 24679.511569 eV Total energy + Delta-G solvation = -3852.077797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41123 -39.29000 -38.83973 -36.06130 -35.48370 -34.86380 -32.86572 -31.59288 -30.46863 -29.94456 -29.45507 -26.29225 -25.48877 -25.05745 -24.30443 -23.06592 -21.93430 -20.77434 -19.17797 -18.37039 -17.98090 -17.28828 -16.79262 -16.39662 -16.08099 -15.68302 -15.36467 -15.21026 -14.89189 -14.54256 -14.43369 -14.12859 -13.88729 -13.56749 -13.35837 -13.04015 -12.93186 -12.81417 -12.68165 -12.29185 -12.24460 -12.15814 -11.88798 -11.76138 -11.60896 -11.49563 -11.30790 -11.14486 -10.92300 -10.69188 -10.50528 -10.14111 -10.04162 -9.65834 -9.36272 -9.08840 -9.07308 -8.64395 -8.11932 -7.75106 -6.15573 -4.16187 0.96023 1.08293 2.34480 2.53786 3.22247 3.23881 3.36676 3.39836 3.51803 3.83021 4.07926 4.32412 4.34703 4.38139 4.61843 4.78556 4.84778 4.89822 4.98484 5.06199 5.09415 5.12928 5.19392 5.24737 5.36574 5.44887 5.50729 5.56172 5.63675 5.74015 5.79727 5.85812 5.98803 6.02392 6.14564 6.19619 6.25815 6.29541 6.33290 6.34479 6.48356 6.63116 6.84085 7.10309 7.13358 7.32475 7.61866 7.75858 8.15511 8.46116 8.81896 8.88164 9.45561 10.97147 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003007 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.673047 B = 9309.981911 C =10138.074339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.586 5.586 13 C 0.086 3.914 14 C 0.512 3.488 15 O -0.555 6.555 16 C -0.151 4.151 17 C 0.120 3.880 18 N -0.551 5.551 19 C 0.165 3.835 20 C -0.150 4.150 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.075 4.075 26 C -0.137 4.137 27 C 0.515 3.485 28 O -0.520 6.520 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.266 0.734 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 -6.235 22.966 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.316 5.316 13 C -0.057 4.057 14 C 0.299 3.701 15 O -0.435 6.435 16 C -0.193 4.193 17 C -0.002 4.002 18 N -0.274 5.274 19 C 0.070 3.930 20 C -0.170 4.170 21 C -0.106 4.106 22 C -0.163 4.163 23 C -0.104 4.104 24 C -0.131 4.131 25 C -0.112 4.112 26 C -0.176 4.176 27 C 0.305 3.695 28 O -0.395 6.395 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.080 -5.265 22.671 24.983 hybrid contribution -0.578 0.507 -0.494 0.913 sum 8.503 -4.759 22.177 24.223 Atomic orbital electron populations 1.22462 0.99129 1.01071 0.99333 1.19303 0.89974 0.95231 0.82800 0.91907 1.21152 1.32701 1.14205 0.88474 0.90389 1.24867 0.95665 0.96590 0.95619 1.69877 1.45231 1.40202 0.97964 0.86916 0.80428 0.83854 0.77498 1.20399 1.18778 1.22122 1.47858 1.49062 1.11871 1.22829 1.21608 1.01931 0.82703 0.99486 1.20138 0.79022 0.86938 0.84019 1.90652 1.58580 1.17096 1.77125 1.21942 1.01295 1.00078 0.95938 1.21471 0.99547 0.95067 0.84112 1.45631 1.18877 1.50534 1.12365 1.17705 0.85809 0.93100 0.96338 1.21013 0.93810 1.02461 0.99763 1.21040 0.96024 0.95261 0.98249 1.21105 0.99987 0.99475 0.95703 1.20811 0.92418 0.98647 0.98543 1.19505 0.97317 0.98030 0.98209 1.20408 0.96596 0.96931 0.97298 1.21715 1.02763 0.97788 0.95377 1.20796 0.83982 0.80129 0.84602 1.90768 1.21582 1.42867 1.84313 0.94749 0.93108 0.92533 0.92437 0.92727 0.92760 0.90725 0.88929 0.88977 0.88651 0.88135 0.84852 0.85380 0.85808 0.85529 0.89916 0.89209 0.87372 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.65 37.16 0.32 -3.24 16 2 C 0.23 5.59 2.23 -69.08 -0.15 5.43 16 3 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 4 C -0.53 -14.65 8.95 -34.44 -0.31 -14.96 16 5 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 8 Si 0.88 22.03 24.37 -169.99 -4.14 17.89 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 N -0.59 -12.19 2.75 -175.25 -0.48 -12.67 16 13 C 0.09 1.44 9.48 59.85 0.57 2.00 16 14 C 0.51 10.24 7.67 -10.99 -0.08 10.15 16 15 O -0.55 -12.97 15.31 5.55 0.09 -12.88 16 16 C -0.15 -2.28 4.58 -27.89 -0.13 -2.41 16 17 C 0.12 1.71 4.43 -4.05 -0.02 1.70 16 18 N -0.55 -6.80 2.69 -113.62 -0.31 -7.10 16 19 C 0.17 1.79 6.32 -83.75 -0.53 1.26 16 20 C -0.15 -1.59 9.33 -39.40 -0.37 -1.96 16 21 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 22 C -0.14 -1.11 10.04 -39.54 -0.40 -1.50 16 23 C -0.09 -0.63 9.69 -39.62 -0.38 -1.02 16 24 C -0.13 -1.12 5.66 -104.47 -0.59 -1.71 16 25 C -0.08 -0.50 6.00 -27.95 -0.17 -0.66 16 26 C -0.14 -1.08 6.08 -28.00 -0.17 -1.25 16 27 C 0.52 6.41 7.46 -11.15 -0.08 6.32 16 28 O -0.52 -8.40 16.60 5.55 0.09 -8.31 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 31 H 0.06 1.15 6.66 -51.93 -0.35 0.80 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 35 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 36 H 0.09 1.33 7.40 -51.93 -0.38 0.95 16 37 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 38 H 0.10 1.33 5.77 -51.93 -0.30 1.03 16 39 H 0.10 1.63 7.34 -51.93 -0.38 1.25 16 40 H 0.13 1.45 6.02 -52.49 -0.32 1.13 16 41 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.37 8.06 -51.93 -0.42 -0.04 16 46 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -34.73 370.80 -8.07 -42.80 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.69 Total: 1.84 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.99 Total: -0.93 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.01 Total: -45.99 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.18 Total: -21.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.73 -8.07 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158884177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.071 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds