Wall clock time and date at job start Tue Mar 31 2020 15:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 N 1.46495 * 109.47155 * 179.97438 * 17 16 14 19 19 C 1.39830 * 119.76986 * 90.00304 * 18 17 16 20 20 C 1.38862 * 120.19247 * 18.45365 * 19 18 17 21 21 C 1.38111 * 119.88898 * 179.97438 * 20 19 18 22 22 C 1.38303 * 120.09228 * 0.02690 * 21 20 19 23 23 C 1.38282 * 120.14748 * 359.97438 * 22 21 20 24 24 C 1.38091 * 120.02408 * 359.97438 * 23 22 21 25 25 C 1.50659 * 120.17765 * 179.97438 * 24 23 22 26 26 C 1.52905 * 109.52319 * 146.07511 * 25 24 23 27 27 C 1.34561 * 119.78197 * 269.72692 * 18 17 16 28 28 O 1.21291 * 119.60697 * 0.84077 * 27 18 17 29 29 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 31 31 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 34 34 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 35 35 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 36 36 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 37 37 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 38 38 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 39 39 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 40 40 H 1.07998 * 120.06135 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.95353 * 180.02562 * 21 20 19 42 42 H 1.08006 * 119.92452 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.98461 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46598 * 266.09447 * 25 24 23 45 45 H 1.09006 * 109.46205 * 26.06958 * 25 24 23 46 46 H 1.09001 * 109.39656 * 168.71386 * 26 25 24 47 47 H 1.09001 * 109.39862 * 288.53485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 7 4.6328 -0.4745 5.3434 19 6 5.8548 -1.1532 5.3043 20 6 6.7771 -0.8738 4.3045 21 6 7.9823 -1.5476 4.2722 22 6 8.2706 -2.4995 5.2331 23 6 7.3540 -2.7799 6.2299 24 6 6.1478 -2.1088 6.2680 25 6 5.1464 -2.4119 7.3521 26 6 4.3912 -1.1348 7.7218 27 6 3.9044 -0.4464 6.4744 28 8 2.8417 0.1382 6.4884 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9028 -0.5285 -4.4375 33 1 2.4157 -2.7377 0.9718 34 1 1.6237 -2.2852 2.5003 35 1 0.6904 -2.3002 0.9847 36 1 2.4470 -1.0879 3.9074 37 1 3.9003 -1.6024 3.0180 38 1 4.9935 0.5575 3.5533 39 1 3.5405 1.0726 4.4430 40 1 6.5529 -0.1303 3.5540 41 1 8.7006 -1.3308 3.4953 42 1 9.2141 -3.0245 5.2055 43 1 7.5817 -3.5241 6.9788 44 1 4.4399 -3.1611 6.9948 45 1 5.6667 -2.7933 8.2308 46 1 3.5392 -1.3879 8.3529 47 1 5.0575 -0.4645 8.2648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158884177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:55 Heat of formation + Delta-G solvation = -56.620136 kcal Electronic energy + Delta-G solvation = -28532.538574 eV Core-core repulsion = 24679.511569 eV Total energy + Delta-G solvation = -3853.027005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27284 -40.88092 -39.67760 -37.49608 -36.77433 -35.58768 -34.83989 -33.06453 -31.77497 -30.82880 -30.30488 -27.78150 -27.19551 -26.45147 -25.10323 -23.83029 -23.17958 -22.08042 -19.99974 -19.92074 -19.06934 -18.75450 -18.28223 -17.66070 -17.25439 -17.09843 -16.78110 -16.29678 -15.94492 -15.74552 -15.33080 -15.02403 -14.94985 -14.91239 -14.58595 -14.38125 -14.26846 -14.12805 -13.74310 -13.67118 -13.55922 -13.41810 -13.27136 -13.06618 -12.99594 -12.60509 -12.49667 -12.31038 -12.11730 -12.08984 -11.77249 -11.61827 -11.43778 -11.36527 -10.96085 -10.82957 -10.76273 -9.71737 -9.47820 -8.92294 -8.38001 -6.42563 0.24995 0.42745 1.23614 1.33205 1.41930 1.45017 1.59565 1.63324 2.24931 2.27654 2.85549 2.97054 3.33878 3.57045 3.67739 3.77256 3.80448 3.89915 4.06690 4.15269 4.22603 4.29601 4.34633 4.39922 4.43036 4.49592 4.53082 4.56274 4.58603 4.64741 4.72434 4.78081 4.84647 4.90342 4.92918 4.99325 5.03309 5.16270 5.18880 5.26967 5.44311 5.46190 5.60965 5.65014 5.65722 5.97223 6.15928 6.29270 6.58171 6.64919 6.84483 7.15189 7.29036 8.77975 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003007 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.673047 B = 9309.981911 C =10138.074339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.230 3.770 3 H 0.031 0.969 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.940 3.060 9 H -0.253 1.253 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.505 3.495 15 O -0.596 6.596 16 C -0.130 4.130 17 C 0.126 3.874 18 N -0.550 5.550 19 C 0.138 3.862 20 C -0.170 4.170 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.070 4.070 26 C -0.129 4.129 27 C 0.506 3.494 28 O -0.569 6.569 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.087 0.913 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 -8.149 25.849 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 H 0.049 0.951 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.767 3.233 9 H -0.179 1.179 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.293 3.707 15 O -0.478 6.478 16 C -0.171 4.171 17 C 0.003 3.997 18 N -0.272 5.272 19 C 0.044 3.956 20 C -0.190 4.190 21 C -0.118 4.118 22 C -0.158 4.158 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.107 4.107 26 C -0.168 4.168 27 C 0.298 3.702 28 O -0.447 6.447 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.105 0.895 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.382 -7.233 25.581 28.191 hybrid contribution -0.487 1.033 -1.372 1.785 sum 8.895 -6.201 24.209 26.526 Atomic orbital electron populations 1.22328 0.96687 1.02373 0.99914 1.18987 0.91797 0.93472 0.83041 0.95063 1.21331 1.31856 1.13152 0.90125 0.93592 1.25621 0.97091 0.99400 0.95312 1.69994 1.47007 1.42080 0.98592 0.85998 0.79960 0.80243 0.77123 1.17853 1.18920 1.22117 1.47944 1.49220 1.13459 1.21821 1.21827 1.01812 0.80117 1.02116 1.20960 0.78097 0.86643 0.84976 1.90625 1.59861 1.19131 1.78211 1.21801 1.01819 0.99940 0.93557 1.21173 0.98937 0.94473 0.85126 1.45580 1.19586 1.50478 1.11581 1.17937 0.85257 0.94585 0.97792 1.21042 0.95012 1.03021 0.99971 1.21252 0.95574 0.95698 0.99255 1.21480 1.01028 0.98455 0.94845 1.21227 0.91358 0.98521 0.98816 1.19838 0.98298 0.96962 0.97809 1.20508 0.96203 0.96093 0.97916 1.21792 1.03737 0.98329 0.92952 1.21757 0.83296 0.79477 0.85623 1.90741 1.23763 1.45146 1.85085 0.92764 0.93821 0.90901 0.92183 0.93071 0.88847 0.90440 0.87617 0.87251 0.89120 0.90698 0.86593 0.84477 0.83278 0.82073 0.89489 0.85600 0.85882 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.62 8.65 71.98 0.62 -6.00 16 2 C 0.23 11.39 2.23 44.24 0.10 11.48 16 3 H 0.03 1.75 5.96 -2.38 -0.01 1.74 16 4 C -0.53 -29.99 8.95 25.60 0.23 -29.76 16 5 H 0.05 2.84 7.89 -2.91 -0.02 2.82 16 6 C 0.02 1.44 5.45 84.66 0.46 1.90 16 7 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 8 Si 0.94 45.76 24.37 68.60 1.67 47.43 16 9 H -0.25 -11.31 6.87 99.48 0.68 -10.62 16 10 H -0.26 -12.84 6.53 99.48 0.65 -12.19 16 11 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 12 N -0.59 -24.84 2.75 -826.77 -2.28 -27.12 16 13 C 0.08 2.68 9.48 127.77 1.21 3.89 16 14 C 0.50 20.60 7.67 87.66 0.67 21.28 16 15 O -0.60 -29.13 15.31 -3.05 -0.05 -29.18 16 16 C -0.13 -3.92 4.58 29.85 0.14 -3.79 16 17 C 0.13 3.77 4.43 86.38 0.38 4.15 16 18 N -0.55 -13.54 2.69 -631.88 -1.70 -15.24 16 19 C 0.14 2.86 6.32 38.16 0.24 3.10 16 20 C -0.17 -3.63 9.33 22.39 0.21 -3.42 16 21 C -0.10 -1.66 10.04 22.25 0.22 -1.43 16 22 C -0.14 -1.71 10.04 22.30 0.22 -1.49 16 23 C -0.08 -0.87 9.69 22.25 0.22 -0.65 16 24 C -0.13 -1.82 5.66 -19.77 -0.11 -1.93 16 25 C -0.07 -0.64 6.00 29.80 0.18 -0.46 16 26 C -0.13 -1.68 6.08 29.77 0.18 -1.50 16 27 C 0.51 12.29 7.46 87.65 0.65 12.94 16 28 O -0.57 -18.62 16.60 -3.06 -0.05 -18.67 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.91 3.27 -2.39 -0.01 1.91 16 31 H 0.07 2.83 6.66 -2.39 -0.02 2.82 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 2.25 6.44 -2.39 -0.02 2.24 16 35 H 0.08 2.44 6.43 -2.38 -0.02 2.43 16 36 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 37 H 0.11 2.92 8.11 -2.39 -0.02 2.90 16 38 H 0.09 2.75 5.77 -2.39 -0.01 2.74 16 39 H 0.07 2.62 7.34 -2.39 -0.02 2.60 16 40 H 0.12 2.76 6.02 -2.91 -0.02 2.74 16 41 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 45 H 0.13 0.32 8.06 -2.38 -0.02 0.30 16 46 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -79.57 370.80 4.63 -74.94 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.91 Total: 17.03 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.83 Total: 8.32 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.68 Total: -99.86 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.10 Total: -47.85 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -79.57 4.63 -74.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158884177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.318 kcal (2) G-P(sol) polarization free energy of solvation -79.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds