Wall clock time and date at job start Tue Mar 31 2020 16:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47346 * 2 1 4 4 C 1.36448 * 124.84748 * 90.02441 * 3 2 1 5 5 C 1.50697 * 125.57257 * 359.96003 * 4 3 2 6 6 C 1.34484 * 108.85801 * 179.97438 * 4 3 2 7 7 C 1.46687 * 106.33221 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94742 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00308 * 220.60306 * 8 7 6 10 10 N 1.34776 * 119.99449 * 40.59867 * 8 7 6 11 11 C 1.46498 * 120.00488 * 6.11335 * 10 8 7 12 12 C 1.50707 * 109.46824 * 264.13454 * 11 10 8 13 13 H 1.07994 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99697 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99995 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47108 * 90.00024 * 16 14 12 18 18 H 1.48505 * 109.46985 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.46670 * 329.99995 * 16 14 12 20 20 C 1.46503 * 119.99854 * 186.11230 * 10 8 7 21 21 C 1.50705 * 109.47087 * 84.73310 * 20 10 8 22 22 C 1.34509 * 125.79023 * 90.00185 * 21 20 10 23 23 C 1.41379 * 106.84618 * 179.79329 * 22 21 20 24 24 C 1.34523 * 106.83534 * 0.37035 * 23 22 21 25 25 O 1.34301 * 125.78804 * 270.02362 * 21 20 10 26 26 C 1.34655 * 124.85438 * 270.28944 * 3 2 1 27 27 C 1.50702 * 125.80157 * 0.06306 * 26 3 2 28 28 H 1.08998 * 109.46974 * 59.99335 * 1 2 3 29 29 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46766 * 300.00100 * 1 2 3 31 31 H 1.09005 * 109.46950 * 240.00318 * 2 1 3 32 32 H 1.08998 * 109.46974 * 120.00665 * 2 1 3 33 33 H 1.09002 * 109.47323 * 269.99844 * 5 4 3 34 34 H 1.08998 * 109.47170 * 29.99797 * 5 4 3 35 35 H 1.09000 * 109.47389 * 149.99730 * 5 4 3 36 36 H 1.07999 * 126.83782 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47018 * 24.13216 * 11 10 8 38 38 H 1.08998 * 109.47475 * 144.13606 * 11 10 8 39 39 H 0.97008 * 120.00013 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.47301 * 324.73500 * 20 10 8 41 41 H 1.08998 * 109.47337 * 204.73485 * 20 10 8 42 42 H 1.08007 * 126.58071 * 359.97438 * 22 21 20 43 43 H 1.07993 * 126.58730 * 180.23899 * 23 22 21 44 44 H 1.07993 * 125.78756 * 179.89064 * 24 23 22 45 45 H 1.08996 * 109.47265 * 270.15626 * 27 26 3 46 46 H 1.08998 * 109.46929 * 30.15953 * 27 26 3 47 47 H 1.08998 * 109.46707 * 150.15859 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2788 2.1161 1.1198 5 6 2.1102 1.6400 2.5396 6 6 2.7102 3.3348 0.7493 7 6 2.7123 3.3434 -0.7175 8 6 3.1059 4.4581 -1.5956 9 8 2.4629 4.6976 -2.5998 10 7 4.1788 5.2129 -1.2863 11 6 5.0314 4.8449 -0.1533 12 6 4.6073 5.6206 1.0672 13 1 3.7853 6.3182 1.0050 14 6 5.2689 5.4396 2.2633 15 7 6.2696 4.5898 2.3392 16 14 4.7428 6.4006 3.7764 17 1 3.7101 5.6319 4.5166 18 1 5.9190 6.6229 4.6552 19 1 4.1811 7.7107 3.3600 20 6 4.4924 6.4015 -2.0833 21 6 3.6942 7.5735 -1.5728 22 6 4.0853 8.4348 -0.6165 23 6 3.0394 9.3726 -0.4572 24 6 2.0682 9.0234 -1.3200 25 8 2.4717 7.9349 -1.9954 26 6 2.2697 2.1086 -1.1050 27 6 2.0953 1.6408 -2.5269 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.1009 1.8684 2.8820 34 1 2.2739 0.5633 2.5837 35 1 2.8339 2.1440 3.1802 36 1 2.9971 4.1461 1.4019 37 1 4.9341 3.7771 0.0429 38 1 6.0698 5.0779 -0.3891 39 1 6.7353 4.4627 3.1806 40 1 4.2389 6.2164 -3.1272 41 1 5.5564 6.6234 -2.0017 42 1 5.0203 8.4156 -0.0762 43 1 3.0223 10.2077 0.2274 44 1 1.1258 9.5344 -1.4507 45 1 3.0208 1.1821 -2.8746 46 1 1.2880 0.9098 -2.5724 47 1 1.8508 2.4922 -3.1620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162463695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:50 Heat of formation + Delta-G solvation = 26.143536 kcal Electronic energy + Delta-G solvation = -29639.547385 eV Core-core repulsion = 25790.109282 eV Total energy + Delta-G solvation = -3849.438103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87567 -40.90155 -38.43522 -35.00920 -33.80521 -32.58403 -32.26803 -32.17665 -30.31926 -28.92123 -28.57603 -27.22583 -25.66014 -23.88493 -23.34256 -22.68563 -21.06539 -20.87784 -19.93315 -18.84725 -17.38003 -16.87385 -16.48320 -16.25168 -15.49842 -15.29543 -15.00845 -14.72043 -14.48049 -14.39661 -13.93412 -13.50696 -13.03648 -12.88233 -12.82921 -12.67320 -12.54373 -12.27336 -12.24704 -12.17172 -12.04704 -12.01846 -11.85920 -11.70368 -11.32028 -11.21987 -11.07978 -11.07861 -10.85173 -10.73156 -10.63095 -10.14752 -9.67038 -9.19529 -9.00455 -8.47431 -7.91907 -7.74121 -7.58303 -7.27626 -6.07313 -4.09810 2.29994 2.52913 3.16223 3.23812 3.26884 3.32060 3.34659 3.40511 3.65699 4.16278 4.30494 4.47719 4.72916 4.99327 5.05703 5.23004 5.25086 5.32178 5.40371 5.51692 5.53697 5.57540 5.62590 5.65030 5.66851 5.85815 5.87856 5.93419 5.97723 6.07234 6.14588 6.26599 6.31946 6.42667 6.51147 6.63031 6.70301 6.77365 6.88086 7.09470 7.16810 7.38264 7.65193 7.70013 7.82798 7.83354 7.88043 7.92989 8.21843 8.49287 8.96115 9.22325 9.53518 10.99246 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.005604 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.244597 B = 4995.481376 C = 6748.927892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.442 5.442 4 C -0.019 4.019 5 C -0.074 4.074 6 C -0.120 4.120 7 C -0.212 4.212 8 C 0.595 3.405 9 O -0.573 6.573 10 N -0.591 5.591 11 C 0.237 3.763 12 C -0.519 4.519 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.882 3.118 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.203 3.797 21 C -0.014 4.014 22 C -0.182 4.182 23 C -0.217 4.217 24 C -0.058 4.058 25 O -0.169 6.169 26 C 0.072 3.928 27 C -0.088 4.088 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.173 0.827 37 H 0.051 0.949 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.192 0.808 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 -5.131 -3.942 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.121 5.121 4 C -0.124 4.124 5 C -0.132 4.132 6 C -0.144 4.144 7 C -0.222 4.222 8 C 0.386 3.614 9 O -0.455 6.455 10 N -0.321 5.321 11 C 0.118 3.882 12 C -0.558 4.558 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.528 5.528 16 Si 0.710 3.290 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.197 1.197 20 C 0.079 3.921 21 C -0.066 4.066 22 C -0.202 4.202 23 C -0.237 4.237 24 C -0.127 4.127 25 O -0.064 6.064 26 C -0.043 4.043 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.190 0.810 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.209 0.791 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.398 -5.589 -4.512 10.311 hybrid contribution -0.137 0.723 1.541 1.708 sum -7.535 -4.867 -2.971 9.449 Atomic orbital electron populations 1.22159 0.94891 1.02300 1.03257 1.21692 0.95136 0.81791 1.03728 1.43403 1.52401 1.11108 1.05169 1.20140 1.11097 0.93158 0.88039 1.20198 1.02105 1.00212 0.90648 1.22740 1.01222 0.97088 0.93303 1.20012 1.13674 0.94443 0.94088 1.17495 0.79260 0.81208 0.83453 1.90647 1.54299 1.72405 1.28132 1.48142 1.27842 1.23720 1.32361 1.19565 0.88876 0.97703 0.82103 1.21503 1.16715 1.23800 0.93812 0.91663 1.24863 0.94940 0.95231 0.98507 1.69936 1.21431 1.35059 1.26341 0.86729 0.78147 0.80933 0.83186 1.20569 1.21332 1.19665 1.19589 0.96578 0.80580 0.95343 1.23007 0.84843 0.99103 0.99611 1.21598 1.01939 0.96489 1.00212 1.21767 0.95573 1.03015 1.03326 1.23836 1.00748 0.90411 0.97678 1.84070 1.30578 1.38361 1.53411 1.19947 1.04040 0.91760 0.88521 1.20422 1.01208 1.02383 0.90579 0.91933 0.91282 0.91869 0.89806 0.89572 0.92135 0.92748 0.90086 0.80979 0.93098 0.95258 0.92838 0.89854 0.87796 0.83268 0.84327 0.79130 0.91573 0.92381 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.10 1.13 6.08 -4.04 -0.02 1.10 16 3 N -0.44 -7.19 2.69 -107.96 -0.29 -7.48 16 4 C -0.02 -0.34 6.85 -81.87 -0.56 -0.90 16 5 C -0.07 -1.10 10.06 36.00 0.36 -0.73 16 6 C -0.12 -2.61 8.83 -37.50 -0.33 -2.94 16 7 C -0.21 -4.59 5.13 -103.35 -0.53 -5.12 16 8 C 0.60 13.65 7.37 -12.59 -0.09 13.56 16 9 O -0.57 -13.81 15.28 5.25 0.08 -13.73 16 10 N -0.59 -13.07 2.46 -177.76 -0.44 -13.51 16 11 C 0.24 5.68 4.71 -5.19 -0.02 5.65 16 12 C -0.52 -13.07 6.37 -34.44 -0.22 -13.29 16 13 H 0.07 1.73 6.82 -52.49 -0.36 1.37 16 14 C 0.07 1.72 5.44 -17.82 -0.10 1.63 16 15 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 16 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.20 3.97 5.97 -5.19 -0.03 3.94 16 21 C -0.01 -0.29 6.77 -35.62 -0.24 -0.53 16 22 C -0.18 -3.57 9.67 -39.71 -0.38 -3.95 16 23 C -0.22 -3.81 10.91 -39.70 -0.43 -4.24 16 24 C -0.06 -0.99 12.09 29.42 0.36 -0.64 16 25 O -0.17 -3.44 10.65 5.71 0.06 -3.38 16 26 C 0.07 1.32 6.89 -81.88 -0.56 0.76 16 27 C -0.09 -1.33 9.60 36.01 0.35 -0.98 16 28 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 32 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.67 6.94 -51.93 -0.36 0.31 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.17 4.16 5.33 -52.49 -0.28 3.88 16 37 H 0.05 1.31 5.97 -51.93 -0.31 1.00 16 38 H 0.03 0.73 7.95 -51.93 -0.41 0.31 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.08 1.57 7.50 -51.93 -0.39 1.18 16 41 H 0.10 1.80 7.90 -51.93 -0.41 1.39 16 42 H 0.15 2.93 8.06 -52.48 -0.42 2.50 16 43 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 44 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 47 H 0.09 1.59 6.69 -51.93 -0.35 1.24 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -31.32 386.57 -8.08 -39.40 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.95 Total: 8.67 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.09 Total: -7.96 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.01 Total: -44.17 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.14 Total: -17.11 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.32 -8.08 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162463695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.541 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds