Wall clock time and date at job start Tue Mar 31 2020 16:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47346 * 2 1 4 4 C 1.36448 * 124.84748 * 90.02441 * 3 2 1 5 5 C 1.50697 * 125.57257 * 359.96003 * 4 3 2 6 6 C 1.34484 * 108.85801 * 179.97438 * 4 3 2 7 7 C 1.46687 * 106.33221 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94742 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00308 * 220.60306 * 8 7 6 10 10 N 1.34776 * 119.99449 * 40.59867 * 8 7 6 11 11 C 1.46498 * 120.00488 * 6.11335 * 10 8 7 12 12 C 1.50707 * 109.46824 * 264.13454 * 11 10 8 13 13 H 1.07994 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99697 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99995 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47108 * 90.00024 * 16 14 12 18 18 H 1.48505 * 109.46985 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.46670 * 329.99995 * 16 14 12 20 20 C 1.46503 * 119.99854 * 186.11230 * 10 8 7 21 21 C 1.50705 * 109.47087 * 84.73310 * 20 10 8 22 22 C 1.34509 * 125.79023 * 90.00185 * 21 20 10 23 23 C 1.41379 * 106.84618 * 179.79329 * 22 21 20 24 24 C 1.34523 * 106.83534 * 0.37035 * 23 22 21 25 25 O 1.34301 * 125.78804 * 270.02362 * 21 20 10 26 26 C 1.34655 * 124.85438 * 270.28944 * 3 2 1 27 27 C 1.50702 * 125.80157 * 0.06306 * 26 3 2 28 28 H 1.08998 * 109.46974 * 59.99335 * 1 2 3 29 29 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46766 * 300.00100 * 1 2 3 31 31 H 1.09005 * 109.46950 * 240.00318 * 2 1 3 32 32 H 1.08998 * 109.46974 * 120.00665 * 2 1 3 33 33 H 1.09002 * 109.47323 * 269.99844 * 5 4 3 34 34 H 1.08998 * 109.47170 * 29.99797 * 5 4 3 35 35 H 1.09000 * 109.47389 * 149.99730 * 5 4 3 36 36 H 1.07999 * 126.83782 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47018 * 24.13216 * 11 10 8 38 38 H 1.08998 * 109.47475 * 144.13606 * 11 10 8 39 39 H 0.97008 * 120.00013 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.47301 * 324.73500 * 20 10 8 41 41 H 1.08998 * 109.47337 * 204.73485 * 20 10 8 42 42 H 1.08007 * 126.58071 * 359.97438 * 22 21 20 43 43 H 1.07993 * 126.58730 * 180.23899 * 23 22 21 44 44 H 1.07993 * 125.78756 * 179.89064 * 24 23 22 45 45 H 1.08996 * 109.47265 * 270.15626 * 27 26 3 46 46 H 1.08998 * 109.46929 * 30.15953 * 27 26 3 47 47 H 1.08998 * 109.46707 * 150.15859 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2788 2.1161 1.1198 5 6 2.1102 1.6400 2.5396 6 6 2.7102 3.3348 0.7493 7 6 2.7123 3.3434 -0.7175 8 6 3.1059 4.4581 -1.5956 9 8 2.4629 4.6976 -2.5998 10 7 4.1788 5.2129 -1.2863 11 6 5.0314 4.8449 -0.1533 12 6 4.6073 5.6206 1.0672 13 1 3.7853 6.3182 1.0050 14 6 5.2689 5.4396 2.2633 15 7 6.2696 4.5898 2.3392 16 14 4.7428 6.4006 3.7764 17 1 3.7101 5.6319 4.5166 18 1 5.9190 6.6229 4.6552 19 1 4.1811 7.7107 3.3600 20 6 4.4924 6.4015 -2.0833 21 6 3.6942 7.5735 -1.5728 22 6 4.0853 8.4348 -0.6165 23 6 3.0394 9.3726 -0.4572 24 6 2.0682 9.0234 -1.3200 25 8 2.4717 7.9349 -1.9954 26 6 2.2697 2.1086 -1.1050 27 6 2.0953 1.6408 -2.5269 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.1009 1.8684 2.8820 34 1 2.2739 0.5633 2.5837 35 1 2.8339 2.1440 3.1802 36 1 2.9971 4.1461 1.4019 37 1 4.9341 3.7771 0.0429 38 1 6.0698 5.0779 -0.3891 39 1 6.7353 4.4627 3.1806 40 1 4.2389 6.2164 -3.1272 41 1 5.5564 6.6234 -2.0017 42 1 5.0203 8.4156 -0.0762 43 1 3.0223 10.2077 0.2274 44 1 1.1258 9.5344 -1.4507 45 1 3.0208 1.1821 -2.8746 46 1 1.2880 0.9098 -2.5724 47 1 1.8508 2.4922 -3.1620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162463695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:49 Heat of formation + Delta-G solvation = 9.844878 kcal Electronic energy + Delta-G solvation = -29640.254148 eV Core-core repulsion = 25790.109282 eV Total energy + Delta-G solvation = -3850.144866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36513 -42.30097 -40.14212 -36.81686 -34.95028 -34.48855 -33.77578 -33.51250 -31.84658 -30.12995 -29.84456 -29.13498 -27.16481 -25.39335 -24.77627 -24.18191 -22.54491 -22.32271 -21.40970 -20.30293 -18.90995 -18.62493 -18.18790 -17.76146 -17.12694 -16.73567 -16.51078 -16.24109 -16.09136 -15.79277 -15.29422 -15.02216 -14.33057 -14.28510 -14.14075 -14.06888 -13.99568 -13.69704 -13.64928 -13.62090 -13.48524 -13.42068 -13.18093 -13.07415 -12.83373 -12.65182 -12.63993 -12.61559 -12.32051 -12.17748 -12.02254 -11.99987 -11.64401 -10.79189 -10.68563 -10.48273 -9.59080 -9.26728 -9.18068 -8.72468 -8.08414 -6.15177 0.80373 1.05180 1.40284 1.43756 1.52636 1.64789 1.78667 2.03290 2.22598 2.43290 2.50561 2.74614 3.22080 3.83520 3.87845 3.90559 4.04956 4.11262 4.17301 4.24780 4.30297 4.37012 4.41495 4.51247 4.54124 4.56348 4.70881 4.75218 4.80589 4.82555 4.96304 5.00441 5.06156 5.08341 5.11345 5.14381 5.27986 5.29014 5.32326 5.35385 5.53546 5.70843 5.79776 5.91571 6.11492 6.21246 6.33853 6.36625 6.60156 6.66931 6.94960 7.42369 7.53733 8.97943 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.005604 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.244597 B = 4995.481376 C = 6748.927892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.087 3.913 3 N -0.432 5.432 4 C -0.008 4.008 5 C -0.071 4.071 6 C -0.163 4.163 7 C -0.258 4.258 8 C 0.589 3.411 9 O -0.594 6.594 10 N -0.593 5.593 11 C 0.258 3.742 12 C -0.507 4.507 13 H 0.048 0.952 14 C 0.032 3.968 15 N -0.916 5.916 16 Si 0.934 3.066 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.275 1.275 20 C 0.199 3.801 21 C -0.037 4.037 22 C -0.191 4.191 23 C -0.228 4.228 24 C -0.049 4.049 25 O -0.192 6.192 26 C 0.081 3.919 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.139 0.861 37 H 0.031 0.969 38 H 0.017 0.983 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.166 0.834 44 H 0.236 0.764 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 -6.598 -3.457 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.032 4.032 3 N -0.109 5.109 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.187 4.187 7 C -0.268 4.268 8 C 0.381 3.619 9 O -0.477 6.477 10 N -0.322 5.322 11 C 0.137 3.863 12 C -0.546 4.546 13 H 0.067 0.933 14 C -0.168 4.168 15 N -0.556 5.556 16 Si 0.761 3.239 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.076 3.924 21 C -0.088 4.088 22 C -0.211 4.211 23 C -0.247 4.247 24 C -0.117 4.117 25 O -0.088 6.088 26 C -0.037 4.037 27 C -0.140 4.140 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.157 0.843 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.183 0.817 44 H 0.252 0.748 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.114 -7.065 -4.024 12.214 hybrid contribution 0.325 1.146 1.371 1.816 sum -8.789 -5.920 -2.653 10.924 Atomic orbital electron populations 1.22127 0.93400 1.04168 1.02299 1.22180 0.96305 0.78879 1.05869 1.43707 1.50756 1.12638 1.03821 1.20484 1.08864 0.92238 0.90004 1.20261 1.02687 1.01877 0.87982 1.22440 1.04729 0.98216 0.93286 1.20133 1.16753 0.95876 0.94085 1.17823 0.79044 0.81577 0.83440 1.90605 1.54887 1.73114 1.29117 1.48125 1.27572 1.24526 1.32006 1.19156 0.88294 0.96326 0.82485 1.21390 1.15759 1.23014 0.94412 0.93341 1.25371 0.94970 0.95940 1.00529 1.70016 1.22397 1.36297 1.26921 0.85915 0.77862 0.79605 0.80554 1.20101 1.20912 1.19948 1.19746 0.97619 0.79923 0.95115 1.23004 0.85385 0.99748 1.00685 1.21719 1.02344 0.97167 0.99901 1.22097 0.94943 1.03499 1.04175 1.24737 1.01889 0.88905 0.96129 1.84057 1.30657 1.39744 1.54374 1.20364 1.01947 0.90920 0.90421 1.20451 1.03249 1.02386 0.87926 0.92937 0.87962 0.92819 0.87628 0.87608 0.90267 0.89615 0.91781 0.84312 0.95092 0.96537 0.92771 0.89508 0.86246 0.83988 0.81689 0.74778 0.90071 0.88828 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 71.98 0.74 -1.85 16 2 C 0.09 1.66 6.08 86.38 0.53 2.18 16 3 N -0.43 -13.29 2.69 -495.47 -1.33 -14.62 16 4 C -0.01 -0.30 6.85 40.98 0.28 -0.02 16 5 C -0.07 -1.97 10.06 71.24 0.72 -1.25 16 6 C -0.16 -7.36 8.83 23.62 0.21 -7.15 16 7 C -0.26 -11.57 5.13 -19.04 -0.10 -11.67 16 8 C 0.59 28.25 7.37 86.62 0.64 28.89 16 9 O -0.59 -29.67 15.28 -4.12 -0.06 -29.74 16 10 N -0.59 -27.59 2.46 -834.55 -2.05 -29.64 16 11 C 0.26 13.00 4.71 85.64 0.40 13.40 16 12 C -0.51 -26.58 6.37 25.60 0.16 -26.41 16 13 H 0.05 2.69 6.82 -2.91 -0.02 2.67 16 14 C 0.03 1.67 5.44 84.65 0.46 2.13 16 15 N -0.92 -50.50 13.29 21.45 0.28 -50.22 16 16 Si 0.93 42.51 29.54 68.60 2.03 44.53 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.20 8.15 5.97 85.63 0.51 8.66 16 21 C -0.04 -1.56 6.77 24.83 0.17 -1.39 16 22 C -0.19 -7.62 9.67 22.19 0.21 -7.40 16 23 C -0.23 -7.78 10.91 22.19 0.24 -7.54 16 24 C -0.05 -1.61 12.09 66.97 0.81 -0.80 16 25 O -0.19 -7.90 10.65 -2.49 -0.03 -7.93 16 26 C 0.08 2.91 6.89 41.78 0.29 3.20 16 27 C -0.08 -2.36 9.60 71.24 0.68 -1.67 16 28 H 0.05 0.96 8.11 -2.39 -0.02 0.94 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.60 7.51 -2.38 -0.02 1.59 16 32 H 0.11 1.65 6.90 -2.39 -0.02 1.63 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 1.83 6.94 -2.39 -0.02 1.81 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.14 7.12 5.33 -2.91 -0.02 7.11 16 37 H 0.03 1.70 5.97 -2.39 -0.01 1.68 16 38 H 0.02 0.87 7.95 -2.39 -0.02 0.85 16 39 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 40 H 0.09 3.43 7.50 -2.38 -0.02 3.41 16 41 H 0.12 4.35 7.90 -2.39 -0.02 4.33 16 42 H 0.14 5.76 8.06 -2.91 -0.02 5.74 16 43 H 0.17 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.24 5.21 8.06 -2.91 -0.02 5.19 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.09 1.96 7.56 -2.39 -0.02 1.94 16 47 H 0.07 2.43 6.69 -2.39 -0.02 2.41 16 Total: -1.00 -71.54 386.57 6.77 -64.77 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.97 Total: 31.54 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 6.95 Total: -8.69 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.09 Total: -94.48 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.09 Total: -37.67 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.54 6.77 -64.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162463695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.616 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds