Wall clock time and date at job start Tue Mar 31 2020 15:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47111 * 2 1 4 4 C 1.50701 * 109.47404 * 120.00406 * 2 1 3 5 5 H 1.08003 * 120.00056 * 119.99666 * 4 2 1 6 6 C 1.37875 * 119.99503 * 299.99913 * 4 2 1 7 7 N 1.31517 * 119.99805 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00503 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 90.00103 * 8 6 4 10 10 H 1.48494 * 109.47453 * 210.00271 * 8 6 4 11 11 H 1.48505 * 109.47104 * 330.00248 * 8 6 4 12 12 N 1.46510 * 109.47148 * 240.00245 * 2 1 3 13 13 C 1.34775 * 119.99762 * 85.27301 * 12 2 1 14 14 O 1.21281 * 120.00264 * 359.72604 * 13 12 2 15 15 C 1.50703 * 119.99633 * 179.73043 * 13 12 2 16 16 H 1.08997 * 110.85361 * 300.69684 * 15 13 12 17 17 C 1.54617 * 110.97225 * 64.49057 * 15 13 12 18 18 C 1.51278 * 104.19739 * 142.91679 * 17 15 13 19 19 O 1.21287 * 124.94591 * 163.71121 * 18 17 15 20 20 N 1.34423 * 110.11746 * 343.74469 * 18 17 15 21 21 C 1.46493 * 124.35209 * 179.58399 * 20 18 17 22 22 H 1.08999 * 109.46883 * 180.47227 * 21 20 18 23 23 C 1.52999 * 109.47663 * 300.47130 * 21 20 18 24 24 C 1.50705 * 109.47166 * 60.47463 * 21 20 18 25 25 C 1.38230 * 119.99862 * 216.24155 * 24 21 20 26 26 C 1.38238 * 119.99524 * 179.76749 * 25 24 21 27 27 C 1.38233 * 120.00053 * 0.49909 * 26 25 24 28 28 C 1.38236 * 120.00006 * 359.75523 * 27 26 25 29 29 C 1.38227 * 119.99969 * 359.97438 * 28 27 26 30 30 C 1.46825 * 111.31006 * 359.62754 * 20 18 17 31 31 H 1.08993 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47123 * 300.00152 * 1 2 3 33 33 H 1.09004 * 109.47370 * 59.99757 * 1 2 3 34 34 H 0.97001 * 120.00481 * 179.97438 * 7 6 4 35 35 H 0.96993 * 119.99672 * 265.00132 * 12 2 1 36 36 H 1.09006 * 110.48682 * 261.59350 * 17 15 13 37 37 H 1.09003 * 110.49057 * 24.10261 * 17 15 13 38 38 H 1.09001 * 109.46569 * 59.99680 * 23 21 20 39 39 H 1.08996 * 109.47537 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47012 * 300.00658 * 23 21 20 41 41 H 1.07999 * 120.00298 * 359.97438 * 25 24 21 42 42 H 1.08002 * 119.99823 * 180.22764 * 26 25 24 43 43 H 1.08009 * 119.99910 * 179.72614 * 27 26 25 44 44 H 1.08007 * 119.99813 * 179.97438 * 28 27 26 45 45 H 1.08002 * 119.99984 * 179.97438 * 29 28 27 46 46 H 1.09000 * 110.23487 * 257.97947 * 30 20 18 47 47 H 1.09001 * 110.28029 * 135.96778 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4826 7 7 2.1381 -0.8591 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8744 2.6994 10 1 0.9773 1.9952 3.9070 11 1 0.8491 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1963 13 6 2.1522 -0.0168 -2.3558 14 8 1.8638 1.1599 -2.4102 15 6 2.6603 -0.7258 -3.5848 16 1 3.6543 -1.1382 -3.4117 17 6 1.6743 -1.8283 -4.0350 18 6 1.7252 -1.7770 -5.5461 19 8 1.3204 -2.6496 -6.2849 20 7 2.2849 -0.6239 -5.9510 21 6 2.4958 -0.2549 -7.3529 22 1 2.9730 0.7238 -7.4031 23 6 3.3943 -1.2953 -8.0246 24 6 1.1682 -0.2036 -8.0641 25 6 1.0723 -0.6177 -9.3795 26 6 -0.1466 -0.5751 -10.0303 27 6 -1.2673 -0.1088 -9.3689 28 6 -1.1703 0.3102 -8.0552 29 6 0.0473 0.2624 -7.4027 30 6 2.6588 0.2180 -4.8077 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9041 -0.5276 4.4375 35 1 2.2489 -1.6317 -1.1527 36 1 2.0023 -2.8036 -3.6752 37 1 0.6681 -1.6096 -3.6775 38 1 2.9172 -2.2741 -7.9743 39 1 3.5509 -1.0210 -9.0678 40 1 4.3546 -1.3325 -7.5102 41 1 1.9488 -0.9775 -9.8976 42 1 -0.2223 -0.9020 -11.0568 43 1 -2.2187 -0.0714 -9.8789 44 1 -2.0459 0.6749 -7.5386 45 1 0.1232 0.5901 -6.3764 46 1 1.9261 1.0132 -4.6696 47 1 3.6518 0.6413 -4.9589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170695013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:51 Heat of formation + Delta-G solvation = -37.188582 kcal Electronic energy + Delta-G solvation = -28365.010793 eV Core-core repulsion = 24512.826403 eV Total energy + Delta-G solvation = -3852.184389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07960 -39.47553 -38.72693 -36.36568 -35.18841 -34.69963 -32.49849 -31.39550 -30.86292 -29.77169 -28.93995 -27.74021 -25.27366 -24.62733 -23.42633 -22.52952 -21.61485 -20.84212 -19.63490 -19.14601 -17.73543 -17.50005 -16.61797 -16.44980 -15.91139 -15.54809 -15.30197 -15.09633 -14.72194 -14.57982 -14.20359 -14.04780 -13.99743 -13.65489 -13.39582 -13.14706 -12.90881 -12.89337 -12.81285 -12.43007 -12.26402 -12.14485 -11.98731 -11.79587 -11.66671 -11.39595 -11.28796 -11.12664 -11.06617 -10.86213 -10.24659 -9.95394 -9.73994 -9.29993 -9.28037 -9.05998 -8.96932 -8.81669 -8.74375 -8.27651 -6.25810 -4.29020 1.16211 1.26714 2.52343 2.75845 3.00866 3.19686 3.31943 3.35081 3.65295 3.70083 4.21073 4.26830 4.30260 4.48442 4.65467 4.79970 4.81427 4.85483 4.92359 4.96489 4.99238 5.08989 5.23166 5.33083 5.36122 5.39631 5.42867 5.52118 5.59618 5.68342 5.81088 5.84820 5.88083 5.94672 6.24419 6.29734 6.30164 6.31332 6.36758 6.49198 6.50948 6.77840 6.84220 6.99481 7.10274 7.18569 7.43945 8.04656 8.10084 8.42809 8.67801 8.79315 9.34417 10.86272 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.002655 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.989137 B =10545.077726 C =11093.437763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.515 3.485 14 O -0.551 6.551 15 C -0.124 4.124 16 H 0.116 0.884 17 C -0.146 4.146 18 C 0.523 3.477 19 O -0.522 6.522 20 N -0.616 5.616 21 C 0.197 3.803 22 H 0.101 0.899 23 C -0.167 4.167 24 C -0.090 4.090 25 C -0.109 4.109 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.102 4.102 30 C 0.117 3.883 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.397 0.603 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 0.722 -24.627 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.342 5.342 13 C 0.299 3.701 14 O -0.430 6.430 15 C -0.146 4.146 16 H 0.134 0.866 17 C -0.186 4.186 18 C 0.311 3.689 19 O -0.398 6.398 20 N -0.351 5.351 21 C 0.094 3.906 22 H 0.119 0.881 23 C -0.225 4.225 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.120 4.120 30 C -0.006 4.006 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.231 0.769 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.110 0.890 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.491 1.113 -24.876 24.906 hybrid contribution -0.515 0.304 0.483 0.769 sum -1.006 1.417 -24.393 24.455 Atomic orbital electron populations 1.22455 0.99231 1.00947 0.99363 1.19134 0.90172 0.94677 0.82693 0.93269 1.21026 1.33428 1.14512 0.88504 0.90137 1.24834 0.95464 0.96698 0.95533 1.69864 1.44763 1.40073 0.98084 0.86877 0.80550 0.83577 0.77483 1.20292 1.22141 1.18657 1.46181 1.64479 1.13871 1.09707 1.19936 0.78637 0.87219 0.84341 1.90670 1.51563 1.15905 1.84891 1.22255 1.01484 0.96618 0.94219 0.86639 1.22354 1.02026 1.00747 0.93497 1.20751 0.76292 0.81227 0.90616 1.90714 1.47969 1.40471 1.60626 1.48453 1.61650 1.19380 1.05601 1.19722 0.92613 0.99276 0.78952 0.88113 1.22248 0.99354 1.00480 1.00392 1.20068 0.95224 0.99290 0.94511 1.21043 0.98002 0.99443 0.94231 1.21101 0.92885 1.00116 0.99869 1.21145 0.98511 0.99364 0.94988 1.21141 0.97581 1.00010 0.94980 1.20983 0.92431 0.98805 0.99806 1.22041 1.02539 0.93235 0.82737 0.92732 0.93398 0.94563 0.92225 0.76944 0.87155 0.87282 0.90569 0.91139 0.91925 0.85752 0.86174 0.86286 0.86147 0.86274 0.88995 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.97 37.15 0.33 -3.11 16 2 C 0.24 5.31 2.15 -69.08 -0.15 5.16 16 3 H 0.05 1.22 6.63 -51.93 -0.34 0.88 16 4 C -0.54 -13.93 9.31 -34.44 -0.32 -14.25 16 5 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 8 Si 0.89 21.18 24.37 -169.99 -4.14 17.04 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.18 6.53 56.52 0.37 -5.82 16 12 N -0.70 -12.41 5.06 -54.93 -0.28 -12.68 16 13 C 0.51 8.36 7.03 -10.98 -0.08 8.29 16 14 O -0.55 -10.88 15.19 5.56 0.08 -10.80 16 15 C -0.12 -1.41 3.54 -90.15 -0.32 -1.73 16 16 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.15 -1.64 6.40 -26.75 -0.17 -1.82 16 18 C 0.52 6.75 7.10 -10.86 -0.08 6.67 16 19 O -0.52 -8.40 15.97 5.55 0.09 -8.31 16 20 N -0.62 -6.68 2.03 -166.12 -0.34 -7.02 16 21 C 0.20 1.89 3.27 -69.08 -0.23 1.67 16 22 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 23 C -0.17 -1.45 8.30 37.16 0.31 -1.14 16 24 C -0.09 -0.99 4.85 -104.62 -0.51 -1.49 16 25 C -0.11 -1.08 9.13 -39.58 -0.36 -1.44 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 29 C -0.10 -1.20 9.02 -39.59 -0.36 -1.56 16 30 C 0.12 1.24 6.64 -3.09 -0.02 1.22 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.40 6.18 8.54 -40.82 -0.35 5.84 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.11 1.30 7.89 -51.93 -0.41 0.89 16 38 H 0.08 0.86 6.76 -51.93 -0.35 0.50 16 39 H 0.07 0.47 6.59 -51.93 -0.34 0.13 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.12 0.98 6.03 -52.49 -0.32 0.67 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.44 7.61 -52.49 -0.40 1.04 16 46 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -32.71 376.11 -8.25 -40.96 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.87 Total: 6.50 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.23 Total: -6.31 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.16 Total: -44.75 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.17 Total: -19.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.71 -8.25 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170695013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.772 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds