Wall clock time and date at job start Tue Mar 31 2020 15:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47111 * 2 1 4 4 C 1.50701 * 109.47404 * 120.00406 * 2 1 3 5 5 H 1.08003 * 120.00056 * 119.99666 * 4 2 1 6 6 C 1.37875 * 119.99503 * 299.99913 * 4 2 1 7 7 N 1.31517 * 119.99805 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00503 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 90.00103 * 8 6 4 10 10 H 1.48494 * 109.47453 * 210.00271 * 8 6 4 11 11 H 1.48505 * 109.47104 * 330.00248 * 8 6 4 12 12 N 1.46510 * 109.47148 * 240.00245 * 2 1 3 13 13 C 1.34775 * 119.99762 * 85.27301 * 12 2 1 14 14 O 1.21281 * 120.00264 * 359.72604 * 13 12 2 15 15 C 1.50703 * 119.99633 * 179.73043 * 13 12 2 16 16 H 1.08997 * 110.85361 * 300.69684 * 15 13 12 17 17 C 1.54617 * 110.97225 * 64.49057 * 15 13 12 18 18 C 1.51278 * 104.19739 * 142.91679 * 17 15 13 19 19 O 1.21287 * 124.94591 * 163.71121 * 18 17 15 20 20 N 1.34423 * 110.11746 * 343.74469 * 18 17 15 21 21 C 1.46493 * 124.35209 * 179.58399 * 20 18 17 22 22 H 1.08999 * 109.46883 * 180.47227 * 21 20 18 23 23 C 1.52999 * 109.47663 * 300.47130 * 21 20 18 24 24 C 1.50705 * 109.47166 * 60.47463 * 21 20 18 25 25 C 1.38230 * 119.99862 * 216.24155 * 24 21 20 26 26 C 1.38238 * 119.99524 * 179.76749 * 25 24 21 27 27 C 1.38233 * 120.00053 * 0.49909 * 26 25 24 28 28 C 1.38236 * 120.00006 * 359.75523 * 27 26 25 29 29 C 1.38227 * 119.99969 * 359.97438 * 28 27 26 30 30 C 1.46825 * 111.31006 * 359.62754 * 20 18 17 31 31 H 1.08993 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47123 * 300.00152 * 1 2 3 33 33 H 1.09004 * 109.47370 * 59.99757 * 1 2 3 34 34 H 0.97001 * 120.00481 * 179.97438 * 7 6 4 35 35 H 0.96993 * 119.99672 * 265.00132 * 12 2 1 36 36 H 1.09006 * 110.48682 * 261.59350 * 17 15 13 37 37 H 1.09003 * 110.49057 * 24.10261 * 17 15 13 38 38 H 1.09001 * 109.46569 * 59.99680 * 23 21 20 39 39 H 1.08996 * 109.47537 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47012 * 300.00658 * 23 21 20 41 41 H 1.07999 * 120.00298 * 359.97438 * 25 24 21 42 42 H 1.08002 * 119.99823 * 180.22764 * 26 25 24 43 43 H 1.08009 * 119.99910 * 179.72614 * 27 26 25 44 44 H 1.08007 * 119.99813 * 179.97438 * 28 27 26 45 45 H 1.08002 * 119.99984 * 179.97438 * 29 28 27 46 46 H 1.09000 * 110.23487 * 257.97947 * 30 20 18 47 47 H 1.09001 * 110.28029 * 135.96778 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4826 7 7 2.1381 -0.8591 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8744 2.6994 10 1 0.9773 1.9952 3.9070 11 1 0.8491 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1963 13 6 2.1522 -0.0168 -2.3558 14 8 1.8638 1.1599 -2.4102 15 6 2.6603 -0.7258 -3.5848 16 1 3.6543 -1.1382 -3.4117 17 6 1.6743 -1.8283 -4.0350 18 6 1.7252 -1.7770 -5.5461 19 8 1.3204 -2.6496 -6.2849 20 7 2.2849 -0.6239 -5.9510 21 6 2.4958 -0.2549 -7.3529 22 1 2.9730 0.7238 -7.4031 23 6 3.3943 -1.2953 -8.0246 24 6 1.1682 -0.2036 -8.0641 25 6 1.0723 -0.6177 -9.3795 26 6 -0.1466 -0.5751 -10.0303 27 6 -1.2673 -0.1088 -9.3689 28 6 -1.1703 0.3102 -8.0552 29 6 0.0473 0.2624 -7.4027 30 6 2.6588 0.2180 -4.8077 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9041 -0.5276 4.4375 35 1 2.2489 -1.6317 -1.1527 36 1 2.0023 -2.8036 -3.6752 37 1 0.6681 -1.6096 -3.6775 38 1 2.9172 -2.2741 -7.9743 39 1 3.5509 -1.0210 -9.0678 40 1 4.3546 -1.3325 -7.5102 41 1 1.9488 -0.9775 -9.8976 42 1 -0.2223 -0.9020 -11.0568 43 1 -2.2187 -0.0714 -9.8789 44 1 -2.0459 0.6749 -7.5386 45 1 0.1232 0.5901 -6.3764 46 1 1.9261 1.0132 -4.6696 47 1 3.6518 0.6413 -4.9589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170695013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:50 Heat of formation + Delta-G solvation = -57.671445 kcal Electronic energy + Delta-G solvation = -28365.898996 eV Core-core repulsion = 24512.826403 eV Total energy + Delta-G solvation = -3853.072593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.04851 -40.59116 -39.75036 -37.46083 -36.75891 -35.62167 -34.38039 -32.44609 -31.82003 -31.07852 -29.76105 -28.70146 -27.20942 -25.48887 -24.56436 -23.29595 -22.58248 -22.24525 -21.06944 -20.05512 -19.15425 -18.40266 -18.05357 -17.49416 -17.31196 -16.80674 -16.43838 -16.00574 -15.83808 -15.70449 -15.44801 -15.03477 -15.00026 -14.80153 -14.63695 -14.42305 -14.25989 -14.09476 -13.87586 -13.69535 -13.48319 -13.19368 -13.15634 -12.85200 -12.76141 -12.68912 -12.47105 -12.33863 -12.12956 -11.88297 -11.81158 -11.60697 -11.25615 -11.01351 -10.85744 -10.62080 -9.89952 -9.84851 -9.80554 -9.55284 -8.36384 -6.42027 0.39681 0.48797 1.29068 1.37243 1.45811 1.53461 1.68989 1.89737 2.27335 2.41747 2.88277 3.00268 3.23935 3.38099 3.69922 3.82653 3.89469 3.93413 4.09780 4.19699 4.22486 4.24485 4.27920 4.48039 4.50828 4.57662 4.58356 4.62174 4.67165 4.72231 4.74914 4.82539 4.89273 4.95516 5.02187 5.08043 5.13259 5.24033 5.34530 5.44994 5.50692 5.54992 5.60443 5.65360 5.70383 6.08798 6.10294 6.14391 6.60737 6.86449 7.13761 7.20716 7.43037 8.78752 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.002655 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.989137 B =10545.077726 C =11093.437763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.027 0.973 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.937 3.063 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.259 1.259 12 N -0.696 5.696 13 C 0.518 3.482 14 O -0.585 6.585 15 C -0.108 4.108 16 H 0.147 0.853 17 C -0.142 4.142 18 C 0.520 3.480 19 O -0.558 6.558 20 N -0.607 5.607 21 C 0.190 3.810 22 H 0.123 0.877 23 C -0.159 4.159 24 C -0.102 4.102 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.136 4.136 29 C -0.125 4.125 30 C 0.120 3.880 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 1.004 -26.816 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.044 0.956 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.765 3.235 9 H -0.189 1.189 10 H -0.223 1.223 11 H -0.184 1.184 12 N -0.344 5.344 13 C 0.304 3.696 14 O -0.466 6.466 15 C -0.129 4.129 16 H 0.164 0.836 17 C -0.182 4.182 18 C 0.308 3.692 19 O -0.437 6.437 20 N -0.340 5.340 21 C 0.088 3.912 22 H 0.140 0.860 23 C -0.217 4.217 24 C -0.103 4.103 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.154 4.154 29 C -0.143 4.143 30 C -0.003 4.003 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.145 0.855 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.175 1.398 -27.094 27.131 hybrid contribution -0.583 0.206 1.085 1.249 sum -0.759 1.604 -26.009 26.070 Atomic orbital electron populations 1.22359 0.98032 1.01672 0.99432 1.18756 0.91013 0.93324 0.83173 0.95558 1.21278 1.32196 1.13573 0.89878 0.92288 1.25551 0.96859 0.99273 0.95465 1.69976 1.46752 1.41953 0.98662 0.86028 0.79686 0.80534 0.77239 1.18892 1.22265 1.18356 1.45998 1.64917 1.14423 1.09092 1.20605 0.77337 0.86791 0.84856 1.90661 1.52743 1.17673 1.85500 1.22168 1.02602 0.96297 0.91853 0.83580 1.22350 1.01647 1.01612 0.92589 1.20941 0.75945 0.81310 0.90958 1.90696 1.49649 1.41861 1.61474 1.48484 1.60622 1.18555 1.06341 1.19985 0.92449 1.00686 0.78057 0.85977 1.22188 0.99064 0.98597 1.01843 1.20284 0.95508 0.99308 0.95194 1.21356 0.99076 0.99077 0.94026 1.21485 0.92574 0.99297 1.01050 1.21454 0.99754 0.98915 0.94660 1.21364 0.97668 1.00507 0.95825 1.21038 0.93457 1.00220 0.99611 1.22053 1.03503 0.92485 0.82230 0.91705 0.94296 0.93435 0.92138 0.75535 0.85323 0.88060 0.93213 0.88931 0.90961 0.83795 0.83689 0.84230 0.85483 0.87495 0.90639 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.46 8.97 71.98 0.65 -5.82 16 2 C 0.24 10.73 2.15 44.24 0.10 10.82 16 3 H 0.03 1.31 6.63 -2.39 -0.02 1.29 16 4 C -0.53 -27.64 9.31 25.60 0.24 -27.41 16 5 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 6 C 0.03 1.55 5.45 84.65 0.46 2.01 16 7 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 8 Si 0.94 43.54 24.37 68.60 1.67 45.21 16 9 H -0.26 -11.58 6.87 99.48 0.68 -10.89 16 10 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.26 -11.81 6.53 99.48 0.65 -11.16 16 12 N -0.70 -24.03 5.06 -446.08 -2.26 -26.29 16 13 C 0.52 16.07 7.03 87.66 0.62 16.68 16 14 O -0.58 -22.57 15.19 -3.03 -0.05 -22.62 16 15 C -0.11 -2.21 3.54 -10.49 -0.04 -2.24 16 16 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.14 -2.96 6.40 30.58 0.20 -2.76 16 18 C 0.52 12.83 7.10 87.90 0.62 13.45 16 19 O -0.56 -17.72 15.97 -3.05 -0.05 -17.77 16 20 N -0.61 -12.16 2.03 -798.06 -1.62 -13.78 16 21 C 0.19 3.30 3.27 44.25 0.14 3.44 16 22 H 0.12 1.58 8.07 -2.39 -0.02 1.56 16 23 C -0.16 -2.40 8.30 71.98 0.60 -1.80 16 24 C -0.10 -2.13 4.85 -19.86 -0.10 -2.23 16 25 C -0.12 -2.13 9.13 22.27 0.20 -1.92 16 26 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 27 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 28 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 29 C -0.12 -2.94 9.02 22.27 0.20 -2.74 16 30 C 0.12 2.29 6.64 86.82 0.58 2.87 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.66 3.27 -2.39 -0.01 1.66 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.41 12.17 8.54 -92.71 -0.79 11.38 16 36 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.10 2.32 7.89 -2.39 -0.02 2.30 16 38 H 0.05 1.05 6.76 -2.39 -0.02 1.03 16 39 H 0.09 0.96 6.59 -2.39 -0.02 0.94 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.14 1.92 6.03 -2.91 -0.02 1.90 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.11 2.65 7.61 -2.91 -0.02 2.63 16 46 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.71 376.11 3.25 -68.45 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.12 Total: 25.80 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.14 Total: -4.42 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.58 Total: -94.65 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.09 Total: -40.39 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.67 Total: 45.21 kcal Total: -71.71 3.25 -68.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170695013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.783 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds