Wall clock time and date at job start Tue Mar 31 2020 16:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46948 * 2 1 4 4 C 1.46765 * 124.34722 * 90.00369 * 3 2 1 5 5 C 1.54477 * 105.47192 * 162.96242 * 4 3 2 6 6 H 1.09007 * 110.96831 * 267.25619 * 5 4 3 7 7 C 1.50707 * 110.97038 * 143.53152 * 5 4 3 8 8 O 1.21283 * 119.99899 * 329.96514 * 7 5 4 9 9 N 1.34778 * 119.99974 * 149.96054 * 7 5 4 10 10 C 1.46500 * 119.99683 * 5.23108 * 9 7 5 11 11 C 1.50695 * 109.47334 * 266.53815 * 10 9 7 12 12 H 1.08004 * 119.99661 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00185 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99999 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46906 * 120.00348 * 15 13 11 18 18 H 1.48496 * 109.46989 * 239.99749 * 15 13 11 19 19 C 1.39924 * 119.99891 * 185.22932 * 9 7 5 20 20 C 1.38868 * 120.06873 * 352.33493 * 19 9 7 21 21 C 1.38114 * 119.92560 * 179.78726 * 20 19 9 22 22 C 1.38282 * 120.07168 * 0.49328 * 21 20 19 23 23 C 1.50701 * 119.93017 * 179.76385 * 22 21 20 24 24 C 1.38286 * 120.14101 * 359.73674 * 22 21 20 25 25 C 1.38112 * 120.06804 * 0.02661 * 24 22 21 26 26 C 1.54628 * 101.80040 * 25.39265 * 5 4 3 27 27 C 1.34415 * 124.35128 * 269.97354 * 3 2 1 28 28 O 1.21286 * 124.93869 * 0.44105 * 27 3 2 29 29 H 1.08999 * 109.46971 * 59.99668 * 1 2 3 30 30 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46919 * 300.00306 * 1 2 3 32 32 H 1.08997 * 109.47246 * 240.00356 * 2 1 3 33 33 H 1.08994 * 109.47311 * 119.99695 * 2 1 3 34 34 H 1.08992 * 110.24831 * 43.95630 * 4 3 2 35 35 H 1.09005 * 110.24486 * 281.95688 * 4 3 2 36 36 H 1.09000 * 109.47405 * 26.54886 * 10 9 7 37 37 H 1.09011 * 109.46787 * 146.54500 * 10 9 7 38 38 H 0.97000 * 119.99991 * 180.02562 * 14 13 11 39 39 H 1.07996 * 120.04081 * 0.02736 * 20 19 9 40 40 H 1.08006 * 119.96744 * 180.23307 * 21 20 19 41 41 H 1.08999 * 109.47409 * 269.97576 * 23 22 21 42 42 H 1.09007 * 109.47022 * 29.97736 * 23 22 21 43 43 H 1.09007 * 109.46876 * 149.97283 * 23 22 21 44 44 H 1.08000 * 119.96277 * 179.97438 * 24 22 21 45 45 H 1.07999 * 120.03408 * 179.97438 * 25 24 22 46 46 H 1.09000 * 110.48752 * 93.90172 * 26 5 4 47 47 H 1.08997 * 110.48736 * 216.54044 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1748 3.3439 0.7488 6 1 4.2335 3.1030 0.8457 7 6 2.8380 4.5988 1.5123 8 8 1.7109 4.7738 1.9245 9 7 3.7894 5.5266 1.7373 10 6 5.1194 5.3708 1.1430 11 6 6.0286 4.6739 2.1221 12 1 5.6531 4.3764 3.0901 13 6 7.3397 4.4162 1.7822 14 7 7.7970 4.7789 0.6037 15 14 8.4665 3.5516 2.9957 16 1 7.7152 3.2501 4.2406 17 1 8.9602 2.2855 2.3971 18 1 9.6197 4.4315 3.3136 19 6 3.5068 6.6385 2.5383 20 6 2.2081 6.8722 2.9711 21 6 1.9333 7.9682 3.7653 22 6 2.9477 8.8380 4.1210 23 6 2.6432 10.0359 4.9833 24 6 4.2411 8.6107 3.6876 25 6 4.5234 7.5138 2.8973 26 6 2.7712 3.4755 -0.7380 27 6 2.2716 2.0962 -1.1097 28 8 2.1219 1.6942 -2.2442 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.8320 1.5530 1.9385 35 1 1.3637 2.5312 1.6428 36 1 5.0431 4.7773 0.2320 37 1 5.5277 6.3528 0.9037 38 1 8.7193 4.5972 0.3645 39 1 1.4147 6.1955 2.6903 40 1 0.9242 8.1485 4.1055 41 1 2.3859 10.8842 4.3491 42 1 1.8048 9.8064 5.6410 43 1 3.5188 10.2834 5.5836 44 1 5.0311 9.2922 3.9668 45 1 5.5336 7.3371 2.5588 46 1 1.9768 4.2129 -0.8538 47 1 3.6350 3.7457 -1.3454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171028543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:46 Heat of formation + Delta-G solvation = -34.157412 kcal Electronic energy + Delta-G solvation = -28776.310491 eV Core-core repulsion = 24924.257543 eV Total energy + Delta-G solvation = -3852.052948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90270 -39.77726 -38.10623 -36.18560 -35.54532 -33.91087 -32.89567 -31.46453 -30.38894 -29.62320 -27.71303 -27.60194 -26.14751 -23.92654 -23.47176 -22.62528 -21.89673 -20.71974 -19.37144 -18.89311 -17.35187 -16.93027 -16.66137 -16.32224 -15.80336 -15.32671 -14.89687 -14.71480 -14.53957 -14.17145 -13.93011 -13.79882 -13.52369 -13.47696 -13.30336 -13.11236 -12.98559 -12.75084 -12.51653 -12.23497 -12.01570 -11.94935 -11.86495 -11.63981 -11.46844 -11.34806 -11.10925 -11.06304 -11.03547 -10.76906 -10.60100 -10.32361 -10.12849 -9.72911 -9.16789 -8.86837 -8.71809 -8.61757 -8.38495 -7.20292 -6.35204 -4.45121 1.74418 1.96921 2.69825 2.87881 3.11599 3.12380 3.22450 3.25654 3.49266 4.18727 4.36692 4.40500 4.65087 4.86460 4.97092 4.98780 5.11589 5.13619 5.27492 5.28692 5.30950 5.43290 5.55437 5.56129 5.65015 5.65448 5.73359 5.77578 5.77754 5.93170 5.94528 6.05908 6.08557 6.10839 6.20783 6.28372 6.49561 6.59254 6.70066 6.85296 6.91914 6.98775 7.11797 7.16197 7.23644 7.57219 7.74333 7.79206 7.99021 8.27218 8.52318 8.66714 9.24126 10.70833 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008511 B = 0.004667 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.955312 B = 5998.370384 C = 8405.156082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.618 5.618 4 C 0.118 3.882 5 C -0.123 4.123 6 H 0.136 0.864 7 C 0.531 3.469 8 O -0.540 6.540 9 N -0.528 5.528 10 C 0.225 3.775 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.070 3.930 14 N -0.885 5.885 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.162 3.838 20 C -0.175 4.175 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.139 4.139 27 C 0.526 3.474 28 O -0.537 6.537 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.268 0.732 39 H 0.178 0.822 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.117 0.883 45 H 0.140 0.860 46 H 0.106 0.894 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -0.631 3.565 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.352 5.352 4 C -0.006 4.006 5 C -0.145 4.145 6 H 0.154 0.846 7 C 0.321 3.679 8 O -0.421 6.421 9 N -0.246 5.246 10 C 0.107 3.893 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.067 3.933 20 C -0.195 4.195 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.162 4.162 24 C -0.124 4.124 25 C -0.157 4.157 26 C -0.179 4.179 27 C 0.314 3.686 28 O -0.414 6.414 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.195 0.805 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.158 0.842 46 H 0.124 0.876 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.920 -0.911 2.997 10.402 hybrid contribution 1.084 -0.380 0.744 1.369 sum -8.835 -1.291 3.741 9.681 Atomic orbital electron populations 1.22163 0.95895 1.02086 1.02622 1.21324 0.94296 0.81179 1.03120 1.48310 1.65793 1.13735 1.07362 1.22032 1.00110 0.91444 0.86978 1.22309 1.04333 0.93245 0.94605 0.84619 1.20124 0.83968 0.84225 0.79584 1.90266 1.21780 1.77592 1.52465 1.45953 1.14935 1.18942 1.44727 1.19768 0.75984 0.99216 0.94370 1.21399 0.95442 1.39596 1.01811 0.91690 1.24917 0.97836 0.95303 0.95393 1.69915 1.16632 1.45775 1.19948 0.86443 0.80585 0.79380 0.81186 1.19540 1.20701 1.20668 1.18031 0.93696 0.88056 0.93538 1.22703 0.97468 0.99599 0.99685 1.20893 0.98098 0.94843 0.98903 1.19799 0.93942 0.97911 1.01336 1.20672 1.01528 0.95699 0.98253 1.20750 0.95752 0.97404 0.98475 1.21133 0.99625 0.94815 1.00082 1.22292 1.04050 0.96216 0.95378 1.20792 0.76261 0.87299 0.84266 1.90695 1.54246 1.75315 1.21117 0.92280 0.91598 0.92249 0.90064 0.90288 0.89806 0.89359 0.93333 0.93493 0.92243 0.80546 0.86830 0.92036 0.92271 0.92185 0.86514 0.84200 0.87618 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.12 1.37 6.65 -4.04 -0.03 1.35 16 3 N -0.62 -8.56 2.93 -172.39 -0.51 -9.06 16 4 C 0.12 1.60 6.87 -3.12 -0.02 1.58 16 5 C -0.12 -1.96 2.54 -90.14 -0.23 -2.18 16 6 H 0.14 2.36 6.33 -51.93 -0.33 2.03 16 7 C 0.53 9.64 6.66 -10.98 -0.07 9.57 16 8 O -0.54 -10.15 12.20 5.55 0.07 -10.08 16 9 N -0.53 -10.41 2.68 -114.73 -0.31 -10.72 16 10 C 0.23 4.86 4.09 -5.20 -0.02 4.84 16 11 C -0.54 -12.88 8.51 -34.44 -0.29 -13.17 16 12 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -22.71 13.29 55.43 0.74 -21.98 16 15 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 C 0.16 3.17 6.48 -83.70 -0.54 2.63 16 20 C -0.18 -3.20 9.05 -39.39 -0.36 -3.55 16 21 C -0.11 -1.73 9.69 -39.61 -0.38 -2.12 16 22 C -0.13 -1.96 5.88 -104.59 -0.62 -2.57 16 23 C -0.10 -1.20 10.01 36.01 0.36 -0.84 16 24 C -0.11 -1.71 9.69 -39.61 -0.38 -2.10 16 25 C -0.14 -2.57 9.07 -39.39 -0.36 -2.93 16 26 C -0.14 -2.11 6.27 -26.71 -0.17 -2.28 16 27 C 0.53 8.54 8.02 -10.83 -0.09 8.45 16 28 O -0.54 -10.29 17.60 5.55 0.10 -10.19 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.23 6.96 -51.93 -0.36 0.87 16 36 H 0.05 1.05 6.25 -51.93 -0.32 0.72 16 37 H 0.05 1.08 6.75 -51.92 -0.35 0.73 16 38 H 0.27 6.58 8.31 -40.82 -0.34 6.25 16 39 H 0.18 3.33 4.55 -56.13 -0.26 3.08 16 40 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.06 0.63 8.08 -51.92 -0.42 0.21 16 44 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 45 H 0.14 2.82 6.19 -52.49 -0.32 2.49 16 46 H 0.11 1.55 7.89 -51.93 -0.41 1.14 16 47 H 0.11 1.71 7.99 -51.93 -0.42 1.29 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -28.04 382.82 -9.03 -37.06 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.95 Total: 7.88 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.91 Total: -3.03 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.08 Total: -41.76 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.04 -9.03 -37.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171028543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.905 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds