Wall clock time and date at job start Tue Mar 31 2020 16:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46948 * 2 1 4 4 C 1.46765 * 124.34722 * 90.00369 * 3 2 1 5 5 C 1.54477 * 105.47192 * 162.96242 * 4 3 2 6 6 H 1.09007 * 110.96831 * 267.25619 * 5 4 3 7 7 C 1.50707 * 110.97038 * 143.53152 * 5 4 3 8 8 O 1.21283 * 119.99899 * 329.96514 * 7 5 4 9 9 N 1.34778 * 119.99974 * 149.96054 * 7 5 4 10 10 C 1.46500 * 119.99683 * 5.23108 * 9 7 5 11 11 C 1.50695 * 109.47334 * 266.53815 * 10 9 7 12 12 H 1.08004 * 119.99661 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00185 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99999 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46906 * 120.00348 * 15 13 11 18 18 H 1.48496 * 109.46989 * 239.99749 * 15 13 11 19 19 C 1.39924 * 119.99891 * 185.22932 * 9 7 5 20 20 C 1.38868 * 120.06873 * 352.33493 * 19 9 7 21 21 C 1.38114 * 119.92560 * 179.78726 * 20 19 9 22 22 C 1.38282 * 120.07168 * 0.49328 * 21 20 19 23 23 C 1.50701 * 119.93017 * 179.76385 * 22 21 20 24 24 C 1.38286 * 120.14101 * 359.73674 * 22 21 20 25 25 C 1.38112 * 120.06804 * 0.02661 * 24 22 21 26 26 C 1.54628 * 101.80040 * 25.39265 * 5 4 3 27 27 C 1.34415 * 124.35128 * 269.97354 * 3 2 1 28 28 O 1.21286 * 124.93869 * 0.44105 * 27 3 2 29 29 H 1.08999 * 109.46971 * 59.99668 * 1 2 3 30 30 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46919 * 300.00306 * 1 2 3 32 32 H 1.08997 * 109.47246 * 240.00356 * 2 1 3 33 33 H 1.08994 * 109.47311 * 119.99695 * 2 1 3 34 34 H 1.08992 * 110.24831 * 43.95630 * 4 3 2 35 35 H 1.09005 * 110.24486 * 281.95688 * 4 3 2 36 36 H 1.09000 * 109.47405 * 26.54886 * 10 9 7 37 37 H 1.09011 * 109.46787 * 146.54500 * 10 9 7 38 38 H 0.97000 * 119.99991 * 180.02562 * 14 13 11 39 39 H 1.07996 * 120.04081 * 0.02736 * 20 19 9 40 40 H 1.08006 * 119.96744 * 180.23307 * 21 20 19 41 41 H 1.08999 * 109.47409 * 269.97576 * 23 22 21 42 42 H 1.09007 * 109.47022 * 29.97736 * 23 22 21 43 43 H 1.09007 * 109.46876 * 149.97283 * 23 22 21 44 44 H 1.08000 * 119.96277 * 179.97438 * 24 22 21 45 45 H 1.07999 * 120.03408 * 179.97438 * 25 24 22 46 46 H 1.09000 * 110.48752 * 93.90172 * 26 5 4 47 47 H 1.08997 * 110.48736 * 216.54044 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1748 3.3439 0.7488 6 1 4.2335 3.1030 0.8457 7 6 2.8380 4.5988 1.5123 8 8 1.7109 4.7738 1.9245 9 7 3.7894 5.5266 1.7373 10 6 5.1194 5.3708 1.1430 11 6 6.0286 4.6739 2.1221 12 1 5.6531 4.3764 3.0901 13 6 7.3397 4.4162 1.7822 14 7 7.7970 4.7789 0.6037 15 14 8.4665 3.5516 2.9957 16 1 7.7152 3.2501 4.2406 17 1 8.9602 2.2855 2.3971 18 1 9.6197 4.4315 3.3136 19 6 3.5068 6.6385 2.5383 20 6 2.2081 6.8722 2.9711 21 6 1.9333 7.9682 3.7653 22 6 2.9477 8.8380 4.1210 23 6 2.6432 10.0359 4.9833 24 6 4.2411 8.6107 3.6876 25 6 4.5234 7.5138 2.8973 26 6 2.7712 3.4755 -0.7380 27 6 2.2716 2.0962 -1.1097 28 8 2.1219 1.6942 -2.2442 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.8320 1.5530 1.9385 35 1 1.3637 2.5312 1.6428 36 1 5.0431 4.7773 0.2320 37 1 5.5277 6.3528 0.9037 38 1 8.7193 4.5972 0.3645 39 1 1.4147 6.1955 2.6903 40 1 0.9242 8.1485 4.1055 41 1 2.3859 10.8842 4.3491 42 1 1.8048 9.8064 5.6410 43 1 3.5188 10.2834 5.5836 44 1 5.0311 9.2922 3.9668 45 1 5.5336 7.3371 2.5588 46 1 1.9768 4.2129 -0.8538 47 1 3.6350 3.7457 -1.3454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171028543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:46 Heat of formation + Delta-G solvation = -47.534699 kcal Electronic energy + Delta-G solvation = -28776.890574 eV Core-core repulsion = 24924.257543 eV Total energy + Delta-G solvation = -3852.633031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.27005 -41.10604 -39.44911 -37.49245 -37.08161 -35.03243 -34.66529 -32.72957 -31.74317 -30.69649 -29.40511 -28.88052 -27.35278 -25.37951 -24.82059 -23.79114 -23.30241 -22.03384 -20.60155 -20.27811 -18.77299 -18.68142 -18.10629 -17.63257 -17.08834 -16.54118 -16.49731 -16.16443 -16.03111 -15.41564 -15.22286 -14.96301 -14.69725 -14.61741 -14.49770 -14.40389 -14.37311 -14.22540 -13.95320 -13.38826 -13.25717 -13.23139 -12.96291 -12.92153 -12.86134 -12.67068 -12.58087 -12.52161 -12.22038 -12.14904 -11.99392 -11.87479 -11.77918 -11.04921 -10.72884 -10.65763 -10.22895 -9.79657 -9.74195 -8.65765 -8.21712 -6.38976 0.38957 0.60878 1.38944 1.39821 1.44301 1.51707 1.56235 1.89178 2.08090 2.39377 3.01103 3.07606 3.10846 3.41169 3.51511 3.80327 4.04414 4.11049 4.14978 4.17323 4.24554 4.34236 4.44846 4.49673 4.50046 4.54373 4.58206 4.66735 4.68678 4.80978 4.89021 4.93266 4.93598 4.96919 4.99747 5.13586 5.22143 5.26732 5.29948 5.49187 5.53678 5.59518 5.66079 5.77806 5.86221 5.94687 5.96182 6.34384 6.43563 6.73673 7.01855 7.08930 7.33267 8.81533 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008511 B = 0.004667 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.955312 B = 5998.370384 C = 8405.156082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.610 5.610 4 C 0.125 3.875 5 C -0.118 4.118 6 H 0.120 0.880 7 C 0.530 3.470 8 O -0.546 6.546 9 N -0.535 5.535 10 C 0.242 3.758 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.030 3.970 14 N -0.915 5.915 15 Si 0.952 3.048 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.281 1.281 19 C 0.133 3.867 20 C -0.187 4.187 21 C -0.108 4.108 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.107 4.107 25 C -0.156 4.156 26 C -0.134 4.134 27 C 0.522 3.478 28 O -0.571 6.571 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.269 0.731 39 H 0.171 0.829 40 H 0.143 0.857 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 -0.535 5.720 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.343 5.343 4 C 0.002 3.998 5 C -0.140 4.140 6 H 0.138 0.862 7 C 0.321 3.679 8 O -0.427 6.427 9 N -0.253 5.253 10 C 0.123 3.877 11 C -0.579 4.579 12 H 0.073 0.927 13 C -0.172 4.172 14 N -0.554 5.554 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.207 1.207 19 C 0.038 3.962 20 C -0.206 4.206 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.126 4.126 25 C -0.176 4.176 26 C -0.175 4.175 27 C 0.310 3.690 28 O -0.451 6.451 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.187 0.813 40 H 0.160 0.840 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.157 0.843 45 H 0.135 0.865 46 H 0.128 0.872 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.969 -0.821 5.192 12.163 hybrid contribution 1.338 -0.320 0.143 1.383 sum -9.631 -1.141 5.334 11.068 Atomic orbital electron populations 1.22111 0.94827 1.03472 1.01682 1.21627 0.95178 0.79618 1.04230 1.48428 1.64691 1.14611 1.06591 1.22038 0.99920 0.90809 0.87023 1.22200 1.03872 0.93156 0.94744 0.86171 1.20408 0.83636 0.84430 0.79438 1.90261 1.21782 1.77857 1.52810 1.45890 1.14399 1.19775 1.45230 1.19380 0.76808 0.97618 0.93931 1.21484 0.95838 1.39066 1.01495 0.92732 1.25541 0.99037 0.95955 0.96633 1.69999 1.16965 1.47051 1.21354 0.85582 0.78820 0.78439 0.79348 1.19421 1.20289 1.20685 1.18306 0.94638 0.88539 0.94717 1.22715 0.96555 1.00669 1.00645 1.21251 0.99786 0.93838 0.97755 1.20242 0.92962 0.98626 1.00430 1.20743 1.02809 0.94198 0.98166 1.21056 0.97266 0.96718 0.97528 1.21086 0.98523 0.96331 1.01688 1.22240 1.04048 0.96244 0.94922 1.20861 0.76193 0.87637 0.84308 1.90672 1.56051 1.75984 1.22440 0.94408 0.89093 0.91894 0.90736 0.87392 0.87681 0.89089 0.93647 0.95552 0.92194 0.81258 0.83962 0.90501 0.90622 0.90954 0.84319 0.86527 0.87190 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.24 71.98 0.74 -2.26 16 2 C 0.11 2.36 6.65 86.38 0.57 2.93 16 3 N -0.61 -16.37 2.93 -817.91 -2.40 -18.77 16 4 C 0.13 3.27 6.87 86.83 0.60 3.87 16 5 C -0.12 -3.78 2.54 -10.48 -0.03 -3.81 16 6 H 0.12 4.27 6.33 -2.38 -0.02 4.25 16 7 C 0.53 19.54 6.66 87.66 0.58 20.12 16 8 O -0.55 -20.51 12.20 -3.04 -0.04 -20.54 16 9 N -0.53 -21.77 2.68 -635.30 -1.71 -23.48 16 10 C 0.24 10.91 4.09 85.63 0.35 11.26 16 11 C -0.54 -26.20 8.51 25.60 0.22 -25.98 16 12 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 13 C 0.03 1.47 5.46 84.65 0.46 1.93 16 14 N -0.92 -47.91 13.29 21.45 0.28 -47.62 16 15 Si 0.95 39.87 29.54 68.60 2.03 41.90 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 17 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 19 C 0.13 5.30 6.48 38.15 0.25 5.55 16 20 C -0.19 -6.74 9.05 22.39 0.20 -6.54 16 21 C -0.11 -3.22 9.69 22.25 0.22 -3.00 16 22 C -0.12 -3.39 5.88 -19.84 -0.12 -3.50 16 23 C -0.10 -1.95 10.01 71.24 0.71 -1.24 16 24 C -0.11 -3.38 9.69 22.25 0.22 -3.16 16 25 C -0.16 -6.01 9.07 22.39 0.20 -5.81 16 26 C -0.13 -4.18 6.27 30.60 0.19 -3.99 16 27 C 0.52 17.09 8.02 87.92 0.71 17.79 16 28 O -0.57 -22.33 17.60 -3.05 -0.05 -22.39 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.68 7.93 -2.39 -0.02 1.66 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 2.40 6.96 -2.38 -0.02 2.39 16 36 H 0.05 2.06 6.25 -2.39 -0.01 2.04 16 37 H 0.03 1.29 6.75 -2.38 -0.02 1.28 16 38 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 39 H 0.17 6.37 4.55 -60.60 -0.28 6.09 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 43 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 45 H 0.12 4.97 6.19 -2.91 -0.02 4.95 16 46 H 0.11 3.31 7.89 -2.39 -0.02 3.30 16 47 H 0.11 3.47 7.99 -2.39 -0.02 3.45 16 Total: -1.00 -61.28 382.82 4.90 -56.38 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.71 Total: 30.35 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.07 Total: 4.17 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -3.82 Total: -89.87 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.09 Total: -42.93 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -61.28 4.90 -56.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171028543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.845 kcal (2) G-P(sol) polarization free energy of solvation -61.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds